Wall clock time and date at job start Tue Mar 31 2020 12:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.08993 * 109.47347 * 56.08199 * 3 2 1 5 5 C 1.50701 * 109.47210 * 176.08527 * 3 2 1 6 6 H 1.07991 * 120.00269 * 119.99868 * 5 3 2 7 7 C 1.37881 * 119.99737 * 300.00233 * 5 3 2 8 8 N 1.31520 * 119.99837 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47263 * 59.99610 * 9 7 5 11 11 H 1.48497 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46663 * 299.99407 * 9 7 5 13 13 N 1.46909 * 109.47328 * 296.08222 * 3 2 1 14 14 C 1.46895 * 110.99916 * 152.74737 * 13 3 2 15 15 H 1.08997 * 110.43415 * 34.32092 * 14 13 3 16 16 C 1.54627 * 110.59656 * 156.93722 * 14 13 3 17 17 C 1.54661 * 101.68646 * 93.72217 * 16 14 13 18 18 N 1.46758 * 105.38068 * 25.76264 * 17 16 14 19 19 C 1.38802 * 124.34694 * 162.85415 * 18 17 16 20 20 S 1.70448 * 124.64724 * 185.62996 * 19 18 17 21 21 C 1.75461 * 92.52124 * 179.97438 * 20 19 18 22 22 C 1.32618 * 110.78148 * 0.22871 * 21 20 19 23 23 C 1.36987 * 124.64879 * 5.62751 * 19 18 17 24 24 C 1.43200 * 123.57707 * 359.97438 * 23 19 18 25 25 N 8.01930 * 64.78957 * 316.70692 * 2 1 3 26 26 C 1.34424 * 111.30464 * 342.59487 * 18 17 16 27 27 O 1.21282 * 124.94517 * 180.65062 * 26 18 17 28 28 H 1.09000 * 109.47067 * 185.12308 * 1 2 3 29 29 H 1.09000 * 109.46902 * 305.12615 * 1 2 3 30 30 H 1.09007 * 109.47223 * 65.12398 * 1 2 3 31 31 H 1.09006 * 109.46789 * 240.00003 * 2 1 3 32 32 H 1.08997 * 109.47390 * 120.00379 * 2 1 3 33 33 H 0.97001 * 119.99605 * 179.97438 * 8 7 5 34 34 H 1.00897 * 110.99406 * 276.70647 * 13 3 2 35 35 H 1.09004 * 110.96771 * 212.05486 * 16 14 13 36 36 H 1.09003 * 110.97269 * 335.77628 * 16 14 13 37 37 H 1.09002 * 110.39696 * 266.74146 * 17 16 14 38 38 H 1.08999 * 110.18167 * 144.67778 * 17 16 14 39 39 H 1.08002 * 124.60847 * 179.97438 * 21 20 19 40 40 H 1.08001 * 123.42152 * 179.75125 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6206 1.9761 0.8527 5 6 3.5439 1.4435 0.0970 6 1 4.1353 1.8929 -0.6869 7 6 4.1648 0.8706 1.1867 8 7 3.4446 0.3237 2.1416 9 14 6.0289 0.8726 1.3073 10 1 6.5235 2.2728 1.3077 11 1 6.4442 0.2011 2.5650 12 1 6.6008 0.1458 0.1454 13 7 1.6292 2.1072 -1.2440 14 6 1.5018 3.5575 -1.0486 15 1 2.2463 3.9123 -0.3359 16 6 1.6444 4.3025 -2.3961 17 6 0.1681 4.4371 -2.8373 18 7 -0.6136 4.4059 -1.5956 19 6 -1.9307 4.8307 -1.4886 20 16 -2.8022 4.9264 -0.0269 21 6 -4.2439 5.5156 -0.8351 22 6 -4.0423 5.6177 -2.1419 23 6 -2.7082 5.2306 -2.5431 24 6 -2.2494 5.2592 -3.8993 25 7 -1.8858 5.2809 -4.9753 26 6 0.1079 3.9078 -0.5766 27 8 -0.2993 3.7609 0.5563 28 1 -0.3633 -1.0236 0.0918 29 1 -0.3633 0.5913 0.8405 30 1 -0.3634 0.4323 -0.9324 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8814 -0.0797 2.9079 34 1 2.2705 1.8982 -1.9944 35 1 2.1040 5.2806 -2.2543 36 1 2.2109 3.7077 -3.1127 37 1 -0.1134 3.6040 -3.4813 38 1 0.0154 5.3838 -3.3555 39 1 -5.1708 5.7580 -0.3366 40 1 -4.7972 5.9572 -2.8355 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:53 Heat of formation + Delta-G solvation = 35.168842 kcal Electronic energy + Delta-G solvation = -24606.996476 eV Core-core repulsion = 21127.669745 eV Total energy + Delta-G solvation = -3479.326730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97392 -38.26426 -36.62021 -36.00531 -35.82099 -33.29395 -31.68035 -30.25011 -28.74654 -27.09372 -25.54572 -25.08702 -22.75567 -22.22117 -20.88586 -20.46144 -19.60219 -18.22646 -17.16026 -16.70037 -16.55987 -15.67342 -15.15177 -14.85900 -14.58846 -14.49355 -14.13711 -13.90892 -13.69334 -13.43196 -13.31034 -12.92260 -12.81975 -12.70546 -12.49306 -12.25332 -11.93549 -11.75925 -11.42000 -11.31563 -11.06451 -10.96770 -10.93180 -10.74248 -10.45967 -10.27501 -9.81611 -9.60169 -9.56574 -9.17306 -8.57168 -8.43310 -8.09421 -7.59383 -6.06577 -4.20478 0.61611 1.05869 1.78662 1.83614 2.58421 2.64910 2.75022 3.23628 3.30042 3.30962 3.42132 4.02577 4.32678 4.37246 4.44363 4.76208 4.84110 4.88176 5.04822 5.19854 5.30652 5.41126 5.53443 5.79407 5.81650 5.82834 5.95030 6.03252 6.29839 6.38485 6.47667 6.67697 6.68040 7.06505 7.13657 7.30184 7.47953 7.49408 7.69166 7.87399 7.99860 8.00816 8.18222 8.45341 8.88802 9.47451 10.94598 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.003786 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.896860 B = 7393.746494 C = 7964.052211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.212 3.788 4 H 0.044 0.956 5 C -0.553 4.553 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.669 5.669 14 C 0.069 3.931 15 H 0.097 0.903 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.531 5.531 19 C 0.103 3.897 20 S 0.277 5.723 21 C -0.274 4.274 22 C -0.066 4.066 23 C -0.147 4.147 24 C 0.286 3.714 25 N -0.436 5.436 26 C 0.530 3.470 27 O -0.478 6.478 28 H 0.025 0.975 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.263 0.737 34 H 0.342 0.658 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.173 0.827 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 10.479 -6.494 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.062 0.938 5 C -0.592 4.592 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.303 5.303 14 C -0.045 4.045 15 H 0.114 0.886 16 C -0.172 4.172 17 C -0.018 4.018 18 N -0.255 5.255 19 C -0.119 4.119 20 S 0.540 5.460 21 C -0.410 4.410 22 C -0.097 4.097 23 C -0.168 4.168 24 C -0.029 4.029 25 N -0.114 5.114 26 C 0.318 3.682 27 O -0.348 6.348 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.190 0.810 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.737 9.870 -5.693 16.358 hybrid contribution 1.434 0.475 -1.082 1.858 sum -10.304 10.346 -6.775 16.097 Atomic orbital electron populations 1.21683 0.98945 0.98359 1.00311 1.21479 0.92068 0.98875 1.01789 1.19345 0.92969 0.91423 0.85772 0.93775 1.21743 0.92235 1.38967 1.06296 0.92749 1.24919 0.98046 0.94819 0.95519 1.69875 1.35116 1.37232 1.09455 0.86697 0.85858 0.78197 0.77448 1.20367 1.21191 1.20263 1.60784 1.55412 1.02643 1.11468 1.21970 0.92237 0.93379 0.96914 0.88586 1.22917 0.94469 1.02111 0.97664 1.22446 0.91287 1.03055 0.85048 1.45486 1.07837 1.58795 1.13367 1.22087 0.89217 0.99907 1.00696 1.84270 1.00030 1.60711 1.01028 1.25567 1.04610 1.12498 0.98292 1.20607 0.93555 1.00078 0.95434 1.15983 0.95325 1.19879 0.85586 1.24810 0.93225 0.93024 0.91882 1.81269 1.08142 1.10833 1.11131 1.21742 0.88492 0.74368 0.83629 1.90722 1.74722 1.50313 1.19036 0.95600 0.94103 0.94035 0.95062 0.88962 0.92664 0.83872 0.89384 0.88061 0.89599 0.90080 0.80991 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.73 37.16 0.36 -2.49 16 2 C -0.10 -2.43 5.44 -26.73 -0.15 -2.57 16 3 C 0.21 4.99 1.83 -68.86 -0.13 4.86 16 4 H 0.04 1.20 7.43 -51.93 -0.39 0.82 16 5 C -0.55 -14.03 8.41 -34.44 -0.29 -14.32 16 6 H 0.05 1.33 7.71 -52.49 -0.40 0.93 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.29 11.30 55.43 0.63 -23.67 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.67 -12.66 5.60 -100.97 -0.57 -13.22 16 14 C 0.07 1.15 3.01 -67.73 -0.20 0.95 16 15 H 0.10 1.78 7.78 -51.93 -0.40 1.37 16 16 C -0.13 -1.61 6.86 -25.00 -0.17 -1.78 16 17 C 0.11 1.32 5.52 -3.03 -0.02 1.30 16 18 N -0.53 -7.73 3.10 -114.31 -0.35 -8.09 16 19 C 0.10 1.37 6.96 -14.85 -0.10 1.27 16 20 S 0.28 3.30 20.92 -107.50 -2.25 1.05 16 21 C -0.27 -2.35 11.10 28.83 0.32 -2.03 16 22 C -0.07 -0.61 10.35 -38.98 -0.40 -1.01 16 23 C -0.15 -1.75 5.88 -105.92 -0.62 -2.37 16 24 C 0.29 3.67 12.36 -22.47 -0.28 3.39 16 25 N -0.44 -6.16 18.21 41.84 0.76 -5.39 16 26 C 0.53 9.22 7.49 -10.86 -0.08 9.14 16 27 O -0.48 -9.65 15.59 5.56 0.09 -9.57 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.84 7.87 -51.93 -0.41 0.43 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.43 5.98 -51.93 -0.31 2.12 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.34 6.06 7.73 -39.29 -0.30 5.76 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.09 7.59 -51.93 -0.39 0.69 16 37 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 38 H 0.08 0.94 6.48 -51.93 -0.34 0.61 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -29.32 349.46 -8.34 -37.66 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.04 Total: 4.54 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.86 Total: -3.91 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.47 Total: -50.37 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.25 Total: 1.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.32 -8.34 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.827 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds