Wall clock time and date at job start Tue Mar 31 2020 12:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.08993 * 109.47347 * 56.08199 * 3 2 1 5 5 C 1.50701 * 109.47210 * 176.08527 * 3 2 1 6 6 H 1.07991 * 120.00269 * 119.99868 * 5 3 2 7 7 C 1.37881 * 119.99737 * 300.00233 * 5 3 2 8 8 N 1.31520 * 119.99837 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47263 * 59.99610 * 9 7 5 11 11 H 1.48497 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46663 * 299.99407 * 9 7 5 13 13 N 1.46909 * 109.47328 * 296.08222 * 3 2 1 14 14 C 1.46895 * 110.99916 * 152.74737 * 13 3 2 15 15 H 1.08997 * 110.43415 * 34.32092 * 14 13 3 16 16 C 1.54627 * 110.59656 * 156.93722 * 14 13 3 17 17 C 1.54661 * 101.68646 * 93.72217 * 16 14 13 18 18 N 1.46758 * 105.38068 * 25.76264 * 17 16 14 19 19 C 1.38802 * 124.34694 * 162.85415 * 18 17 16 20 20 S 1.70448 * 124.64724 * 185.62996 * 19 18 17 21 21 C 1.75461 * 92.52124 * 179.97438 * 20 19 18 22 22 C 1.32618 * 110.78148 * 0.22871 * 21 20 19 23 23 C 1.36987 * 124.64879 * 5.62751 * 19 18 17 24 24 C 1.43200 * 123.57707 * 359.97438 * 23 19 18 25 25 N 8.01930 * 64.78957 * 316.70692 * 2 1 3 26 26 C 1.34424 * 111.30464 * 342.59487 * 18 17 16 27 27 O 1.21282 * 124.94517 * 180.65062 * 26 18 17 28 28 H 1.09000 * 109.47067 * 185.12308 * 1 2 3 29 29 H 1.09000 * 109.46902 * 305.12615 * 1 2 3 30 30 H 1.09007 * 109.47223 * 65.12398 * 1 2 3 31 31 H 1.09006 * 109.46789 * 240.00003 * 2 1 3 32 32 H 1.08997 * 109.47390 * 120.00379 * 2 1 3 33 33 H 0.97001 * 119.99605 * 179.97438 * 8 7 5 34 34 H 1.00897 * 110.99406 * 276.70647 * 13 3 2 35 35 H 1.09004 * 110.96771 * 212.05486 * 16 14 13 36 36 H 1.09003 * 110.97269 * 335.77628 * 16 14 13 37 37 H 1.09002 * 110.39696 * 266.74146 * 17 16 14 38 38 H 1.08999 * 110.18167 * 144.67778 * 17 16 14 39 39 H 1.08002 * 124.60847 * 179.97438 * 21 20 19 40 40 H 1.08001 * 123.42152 * 179.75125 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6206 1.9761 0.8527 5 6 3.5439 1.4435 0.0970 6 1 4.1353 1.8929 -0.6869 7 6 4.1648 0.8706 1.1867 8 7 3.4446 0.3237 2.1416 9 14 6.0289 0.8726 1.3073 10 1 6.5235 2.2728 1.3077 11 1 6.4442 0.2011 2.5650 12 1 6.6008 0.1458 0.1454 13 7 1.6292 2.1072 -1.2440 14 6 1.5018 3.5575 -1.0486 15 1 2.2463 3.9123 -0.3359 16 6 1.6444 4.3025 -2.3961 17 6 0.1681 4.4371 -2.8373 18 7 -0.6136 4.4059 -1.5956 19 6 -1.9307 4.8307 -1.4886 20 16 -2.8022 4.9264 -0.0269 21 6 -4.2439 5.5156 -0.8351 22 6 -4.0423 5.6177 -2.1419 23 6 -2.7082 5.2306 -2.5431 24 6 -2.2494 5.2592 -3.8993 25 7 -1.8858 5.2809 -4.9753 26 6 0.1079 3.9078 -0.5766 27 8 -0.2993 3.7609 0.5563 28 1 -0.3633 -1.0236 0.0918 29 1 -0.3633 0.5913 0.8405 30 1 -0.3634 0.4323 -0.9324 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8814 -0.0797 2.9079 34 1 2.2705 1.8982 -1.9944 35 1 2.1040 5.2806 -2.2543 36 1 2.2109 3.7077 -3.1127 37 1 -0.1134 3.6040 -3.4813 38 1 0.0154 5.3838 -3.3555 39 1 -5.1708 5.7580 -0.3366 40 1 -4.7972 5.9572 -2.8355 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566428528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:52 Heat of formation + Delta-G solvation = 17.239683 kcal Electronic energy + Delta-G solvation = -24607.773942 eV Core-core repulsion = 21127.669745 eV Total energy + Delta-G solvation = -3480.104197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.17112 -39.30005 -38.09698 -37.34177 -36.92053 -34.78701 -33.46451 -31.66981 -29.74026 -28.69277 -27.09362 -26.11540 -24.58448 -23.27198 -21.89014 -21.53891 -21.41553 -19.38000 -18.61386 -18.22289 -17.77583 -16.74378 -16.69807 -16.33771 -15.92573 -15.54264 -15.38339 -15.05984 -14.95171 -14.73002 -14.66595 -14.39675 -14.24753 -13.76163 -13.55250 -13.48414 -13.28991 -13.10441 -13.04959 -12.89676 -12.63745 -12.53099 -12.43250 -12.09169 -11.86396 -11.55941 -11.48571 -11.31349 -11.09107 -10.99734 -10.44223 -9.49067 -9.26460 -9.06925 -8.05383 -6.27205 -0.37946 0.15198 0.94480 1.05424 1.35092 1.42593 1.42957 1.50288 1.62263 1.65106 2.41683 2.44015 3.03149 3.16784 3.22073 3.32771 3.58120 3.80086 3.90287 4.12054 4.29921 4.32031 4.56042 4.57789 4.69387 4.82020 4.82340 4.85687 4.90531 5.04821 5.14957 5.18464 5.32653 5.34317 5.47242 5.53598 5.59022 5.74757 6.06338 6.10264 6.27101 6.46485 6.70219 6.76605 6.97296 7.44633 8.93346 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.003786 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.896860 B = 7393.746494 C = 7964.052211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.560 4.560 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.661 5.661 14 C 0.063 3.937 15 H 0.072 0.928 16 C -0.118 4.118 17 C 0.107 3.893 18 N -0.529 5.529 19 C 0.070 3.930 20 S 0.236 5.764 21 C -0.241 4.241 22 C -0.070 4.070 23 C -0.134 4.134 24 C 0.296 3.704 25 N -0.456 5.456 26 C 0.525 3.475 27 O -0.519 6.519 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.261 0.739 34 H 0.350 0.650 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.210 0.790 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 11.689 -8.595 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.599 4.599 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.295 5.295 14 C -0.051 4.051 15 H 0.090 0.910 16 C -0.155 4.155 17 C -0.015 4.015 18 N -0.253 5.253 19 C -0.150 4.150 20 S 0.500 5.500 21 C -0.376 4.376 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.019 4.019 25 N -0.134 5.134 26 C 0.313 3.687 27 O -0.393 6.393 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.226 0.774 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.707 11.107 -7.846 18.612 hybrid contribution 1.582 0.178 -0.464 1.658 sum -11.125 11.285 -8.310 17.893 Atomic orbital electron populations 1.21505 0.97132 0.99237 0.99841 1.21346 0.93629 0.98554 1.00355 1.18976 0.91937 0.91288 0.86228 0.98225 1.22123 0.93358 1.38142 1.06288 0.91897 1.25705 1.02270 0.94752 0.95388 1.70036 1.36716 1.38341 1.10002 0.85693 0.80801 0.78270 0.77325 1.19806 1.21539 1.19373 1.60587 1.55138 1.04216 1.09602 1.21976 0.91708 0.92202 0.99185 0.91036 1.22943 0.94779 1.02873 0.94954 1.22535 0.91130 1.03574 0.84305 1.45317 1.08509 1.58413 1.13014 1.22255 0.89009 1.02218 1.01547 1.84490 1.02255 1.61259 1.02040 1.25908 1.03945 1.09991 0.97740 1.20939 0.92822 0.99990 0.96152 1.16298 0.96220 1.18364 0.84659 1.24908 0.92629 0.92454 0.91864 1.81287 1.08821 1.11440 1.11834 1.21746 0.88977 0.74394 0.83599 1.90693 1.75594 1.52257 1.20713 0.93663 0.96072 0.93156 0.94613 0.92078 0.92991 0.82903 0.87051 0.86123 0.89803 0.88850 0.77354 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.73 71.98 0.70 -4.41 16 2 C -0.10 -4.82 5.44 30.59 0.17 -4.65 16 3 C 0.22 10.90 1.83 44.17 0.08 10.98 16 4 H 0.00 -0.01 7.43 -2.39 -0.02 -0.03 16 5 C -0.56 -28.84 8.41 25.60 0.22 -28.63 16 6 H 0.06 3.05 7.71 -2.92 -0.02 3.03 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.91 -52.18 11.30 21.45 0.24 -51.94 16 9 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.66 -25.24 5.60 -473.36 -2.65 -27.89 16 14 C 0.06 2.14 3.01 44.91 0.14 2.28 16 15 H 0.07 2.77 7.78 -2.39 -0.02 2.75 16 16 C -0.12 -2.64 6.86 31.71 0.22 -2.42 16 17 C 0.11 2.53 5.52 86.90 0.48 3.01 16 18 N -0.53 -15.25 3.10 -634.15 -1.97 -17.22 16 19 C 0.07 1.80 6.96 83.29 0.58 2.38 16 20 S 0.24 5.51 20.92 -56.49 -1.18 4.33 16 21 C -0.24 -3.36 11.10 66.66 0.74 -2.62 16 22 C -0.07 -1.03 10.35 22.73 0.24 -0.80 16 23 C -0.13 -2.88 5.88 -20.71 -0.12 -3.00 16 24 C 0.30 6.95 12.36 88.33 1.09 8.04 16 25 N -0.46 -11.92 18.21 19.00 0.35 -11.57 16 26 C 0.52 18.81 7.49 87.90 0.66 19.47 16 27 O -0.52 -22.21 15.59 -3.04 -0.05 -22.26 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 2.03 7.87 -2.38 -0.02 2.01 16 31 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 3.34 5.98 -2.39 -0.01 3.33 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.35 12.16 7.73 -89.70 -0.69 11.47 16 35 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.12 2.27 7.59 -2.39 -0.02 2.25 16 37 H 0.08 2.02 8.06 -2.39 -0.02 2.00 16 38 H 0.09 1.98 6.48 -2.39 -0.02 1.97 16 39 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -66.51 349.46 2.78 -63.73 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.39 Total: 17.58 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.63 Total: 1.10 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.03 Total: -108.62 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.18 Total: 4.33 kcal Total: -66.51 2.78 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.967 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds