Wall clock time and date at job start Tue Mar 31 2020 12:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46808 * 2 1 4 4 H 1.08993 * 109.47486 * 304.76718 * 3 2 1 5 5 C 1.50706 * 109.46827 * 184.76747 * 3 2 1 6 6 H 1.07999 * 119.99931 * 240.00054 * 5 3 2 7 7 C 1.37881 * 119.99909 * 60.00371 * 5 3 2 8 8 N 1.31512 * 119.99972 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00083 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47228 * 89.99720 * 9 7 5 11 11 H 1.48500 * 109.47093 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99710 * 9 7 5 13 13 N 1.46906 * 109.47565 * 64.77215 * 3 2 1 14 14 C 1.46898 * 111.00056 * 207.79520 * 13 3 2 15 15 H 1.08993 * 110.43584 * 330.60206 * 14 13 3 16 16 C 1.54628 * 110.48346 * 208.05567 * 14 13 3 17 17 C 1.54481 * 101.76293 * 266.12056 * 16 14 13 18 18 N 1.46760 * 105.47760 * 334.58578 * 17 16 14 19 19 C 1.38796 * 124.35297 * 197.01995 * 18 17 16 20 20 S 1.70443 * 124.64929 * 174.53857 * 19 18 17 21 21 C 1.75469 * 92.52263 * 179.97438 * 20 19 18 22 22 C 1.32617 * 110.77853 * 359.97438 * 21 20 19 23 23 C 1.36993 * 124.64819 * 354.80872 * 19 18 17 24 24 C 1.43200 * 123.57496 * 359.97438 * 23 19 18 25 25 N 8.09295 * 68.50182 * 44.84013 * 2 1 3 26 26 C 1.34422 * 111.29717 * 17.28244 * 18 17 16 27 27 O 1.21285 * 124.94031 * 179.31219 * 26 18 17 28 28 H 1.09003 * 109.47246 * 64.82026 * 1 2 3 29 29 H 1.09003 * 109.47048 * 184.82290 * 1 2 3 30 30 H 1.09007 * 109.47394 * 304.82039 * 1 2 3 31 31 H 1.08996 * 109.46754 * 239.99765 * 2 1 3 32 32 H 1.09000 * 109.46953 * 120.00314 * 2 1 3 33 33 H 0.96997 * 120.00354 * 180.02562 * 8 7 5 34 34 H 1.00901 * 111.00055 * 83.83573 * 13 3 2 35 35 H 1.09003 * 110.96767 * 148.00587 * 16 14 13 36 36 H 1.08996 * 111.00513 * 24.25338 * 16 14 13 37 37 H 1.09007 * 110.24613 * 215.58642 * 17 16 14 38 38 H 1.08995 * 110.31771 * 93.62991 * 17 16 14 39 39 H 1.08003 * 124.60777 * 179.97438 * 21 20 19 40 40 H 1.08002 * 123.42355 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6086 1.9804 -0.8441 5 6 3.5424 1.4441 -0.1181 6 1 4.1447 1.8897 0.6597 7 6 4.1479 0.8768 -1.2192 8 7 3.4145 0.3338 -2.1662 9 14 6.0101 0.8794 -1.3660 10 1 6.5577 -0.3512 -0.7406 11 1 6.3936 0.9186 -2.8001 12 1 6.5595 2.0729 -0.6739 13 7 1.6466 2.1010 1.2529 14 6 1.5040 3.5507 1.0634 15 1 2.1721 3.8991 0.2759 16 6 1.7889 4.2999 2.3858 17 6 0.3692 4.4463 2.9770 18 7 -0.5404 4.4073 1.8259 19 6 -1.8602 4.8357 1.8557 20 16 -2.8833 4.9183 0.4950 21 6 -4.2290 5.5203 1.4465 22 6 -3.8869 5.6399 2.7222 23 6 -2.5176 5.2552 2.9820 24 6 -1.9144 5.3020 4.2799 25 7 -1.4358 5.3393 5.3096 26 6 0.0674 3.8982 0.7404 27 8 -0.4586 3.7426 -0.3414 28 1 -0.3634 0.4372 -0.9300 29 1 -0.3633 -1.0241 0.0864 30 1 -0.3634 0.5868 0.8437 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8405 -0.0657 -2.9407 34 1 2.3032 1.8956 1.9910 35 1 2.2337 5.2762 2.1929 36 1 2.4253 3.7062 3.0418 37 1 0.2748 5.3978 3.5003 38 1 0.1547 3.6205 3.6553 39 1 -5.2034 5.7608 1.0475 40 1 -4.5610 5.9939 3.4882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:55 Heat of formation + Delta-G solvation = 35.478784 kcal Electronic energy + Delta-G solvation = -24568.775399 eV Core-core repulsion = 21089.462109 eV Total energy + Delta-G solvation = -3479.313290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98225 -38.26843 -36.65062 -36.00618 -35.82402 -33.30478 -31.68692 -30.24523 -28.75442 -27.11086 -25.54757 -25.09215 -22.75593 -22.22459 -20.89007 -20.48043 -19.61450 -18.24035 -17.17100 -16.68138 -16.56674 -15.68119 -15.17537 -14.87917 -14.58854 -14.48403 -14.15165 -13.91801 -13.69912 -13.45291 -13.31999 -12.91837 -12.82622 -12.70604 -12.49615 -12.25201 -11.93435 -11.76006 -11.44029 -11.30793 -11.06669 -10.98047 -10.91906 -10.75064 -10.46587 -10.26975 -9.84888 -9.60735 -9.56286 -9.16336 -8.57974 -8.44457 -8.10193 -7.60165 -6.07601 -4.21557 0.60803 1.04968 1.77931 1.82793 2.58039 2.64292 2.73852 3.22198 3.30253 3.30892 3.41447 4.01820 4.31955 4.37155 4.43785 4.75542 4.83407 4.87985 5.04107 5.18844 5.30001 5.40001 5.52770 5.79278 5.81305 5.82431 5.94528 6.02653 6.28912 6.38009 6.50298 6.66825 6.68648 7.05285 7.14461 7.30156 7.47308 7.49120 7.68855 7.87104 7.99206 8.00116 8.17273 8.44775 8.88054 9.46552 10.93532 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.003747 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.711309 B = 7470.310726 C = 8094.680246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.042 0.958 5 C -0.553 4.553 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.669 5.669 14 C 0.069 3.931 15 H 0.099 0.901 16 C -0.135 4.135 17 C 0.104 3.896 18 N -0.531 5.531 19 C 0.103 3.897 20 S 0.277 5.723 21 C -0.274 4.274 22 C -0.066 4.066 23 C -0.147 4.147 24 C 0.285 3.715 25 N -0.436 5.436 26 C 0.530 3.470 27 O -0.479 6.479 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.341 0.659 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.173 0.827 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 10.460 7.287 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.060 0.940 5 C -0.592 4.592 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.045 4.045 15 H 0.117 0.883 16 C -0.173 4.173 17 C -0.019 4.019 18 N -0.255 5.255 19 C -0.119 4.119 20 S 0.539 5.461 21 C -0.410 4.410 22 C -0.097 4.097 23 C -0.168 4.168 24 C -0.030 4.030 25 N -0.114 5.114 26 C 0.318 3.682 27 O -0.349 6.349 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.190 0.810 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.668 9.854 6.431 16.571 hybrid contribution 1.559 0.481 1.101 1.968 sum -10.109 10.335 7.532 16.302 Atomic orbital electron populations 1.21696 0.98920 0.98371 1.00447 1.21478 0.92123 0.98858 1.01762 1.19331 0.93112 0.91538 0.85426 0.93964 1.21784 0.92256 1.39132 1.05982 0.92672 1.24920 0.98020 0.94823 0.95573 1.69879 1.34959 1.37485 1.09366 0.86634 0.85844 0.78394 0.77321 1.20621 1.21161 1.20047 1.60748 1.54653 1.02969 1.11946 1.21995 0.91264 0.93254 0.97958 0.88289 1.22925 0.95025 1.02217 0.97140 1.22417 0.88963 1.03078 0.87449 1.45489 1.07109 1.58447 1.14452 1.22086 0.89859 0.99836 1.00130 1.84262 0.98192 1.60500 1.03105 1.25567 1.04960 1.12425 0.98009 1.20607 0.92301 1.00092 0.96664 1.15984 0.94982 1.19642 0.86165 1.24815 0.93079 0.93038 0.92024 1.81276 1.08408 1.10802 1.10874 1.21787 0.89861 0.74300 0.82279 1.90716 1.70145 1.50412 1.23624 0.94222 0.95621 0.93730 0.88950 0.95091 0.92710 0.83870 0.89379 0.88020 0.90048 0.89650 0.80988 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.52 16 2 C -0.10 -2.43 5.45 -26.73 -0.15 -2.57 16 3 C 0.21 5.00 1.82 -68.86 -0.13 4.87 16 4 H 0.04 1.14 7.80 -51.93 -0.40 0.74 16 5 C -0.55 -13.94 8.46 -34.44 -0.29 -14.23 16 6 H 0.06 1.35 7.70 -52.49 -0.40 0.94 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.57 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.67 -12.65 5.48 -100.97 -0.55 -13.20 16 14 C 0.07 1.16 3.06 -67.72 -0.21 0.95 16 15 H 0.10 1.83 7.74 -51.93 -0.40 1.43 16 16 C -0.13 -1.63 6.84 -25.10 -0.17 -1.80 16 17 C 0.10 1.30 5.52 -3.12 -0.02 1.28 16 18 N -0.53 -7.68 3.10 -114.41 -0.36 -8.04 16 19 C 0.10 1.36 6.96 -14.85 -0.10 1.25 16 20 S 0.28 3.26 20.92 -107.50 -2.25 1.01 16 21 C -0.27 -2.32 11.10 28.83 0.32 -2.00 16 22 C -0.07 -0.60 10.35 -38.98 -0.40 -1.01 16 23 C -0.15 -1.73 5.88 -105.92 -0.62 -2.36 16 24 C 0.29 3.65 12.37 -22.47 -0.28 3.37 16 25 N -0.44 -6.13 18.20 41.84 0.76 -5.37 16 26 C 0.53 9.15 7.59 -10.86 -0.08 9.06 16 27 O -0.48 -9.57 15.92 5.55 0.09 -9.48 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.92 7.62 -51.92 -0.40 0.52 16 31 H 0.09 2.43 5.96 -51.93 -0.31 2.12 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.34 6.05 7.62 -39.29 -0.30 5.75 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.11 7.53 -51.93 -0.39 0.72 16 37 H 0.08 0.95 6.44 -51.92 -0.33 0.61 16 38 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -29.20 349.78 -8.32 -37.52 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.03 Total: 4.56 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.86 Total: -3.96 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.48 Total: -50.18 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.25 Total: 1.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.20 -8.32 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.998 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds