Wall clock time and date at job start Tue Mar 31 2020 12:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46808 * 2 1 4 4 H 1.08993 * 109.47486 * 304.76718 * 3 2 1 5 5 C 1.50706 * 109.46827 * 184.76747 * 3 2 1 6 6 H 1.07999 * 119.99931 * 240.00054 * 5 3 2 7 7 C 1.37881 * 119.99909 * 60.00371 * 5 3 2 8 8 N 1.31512 * 119.99972 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00083 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47228 * 89.99720 * 9 7 5 11 11 H 1.48500 * 109.47093 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99710 * 9 7 5 13 13 N 1.46906 * 109.47565 * 64.77215 * 3 2 1 14 14 C 1.46898 * 111.00056 * 207.79520 * 13 3 2 15 15 H 1.08993 * 110.43584 * 330.60206 * 14 13 3 16 16 C 1.54628 * 110.48346 * 208.05567 * 14 13 3 17 17 C 1.54481 * 101.76293 * 266.12056 * 16 14 13 18 18 N 1.46760 * 105.47760 * 334.58578 * 17 16 14 19 19 C 1.38796 * 124.35297 * 197.01995 * 18 17 16 20 20 S 1.70443 * 124.64929 * 174.53857 * 19 18 17 21 21 C 1.75469 * 92.52263 * 179.97438 * 20 19 18 22 22 C 1.32617 * 110.77853 * 359.97438 * 21 20 19 23 23 C 1.36993 * 124.64819 * 354.80872 * 19 18 17 24 24 C 1.43200 * 123.57496 * 359.97438 * 23 19 18 25 25 N 8.09295 * 68.50182 * 44.84013 * 2 1 3 26 26 C 1.34422 * 111.29717 * 17.28244 * 18 17 16 27 27 O 1.21285 * 124.94031 * 179.31219 * 26 18 17 28 28 H 1.09003 * 109.47246 * 64.82026 * 1 2 3 29 29 H 1.09003 * 109.47048 * 184.82290 * 1 2 3 30 30 H 1.09007 * 109.47394 * 304.82039 * 1 2 3 31 31 H 1.08996 * 109.46754 * 239.99765 * 2 1 3 32 32 H 1.09000 * 109.46953 * 120.00314 * 2 1 3 33 33 H 0.96997 * 120.00354 * 180.02562 * 8 7 5 34 34 H 1.00901 * 111.00055 * 83.83573 * 13 3 2 35 35 H 1.09003 * 110.96767 * 148.00587 * 16 14 13 36 36 H 1.08996 * 111.00513 * 24.25338 * 16 14 13 37 37 H 1.09007 * 110.24613 * 215.58642 * 17 16 14 38 38 H 1.08995 * 110.31771 * 93.62991 * 17 16 14 39 39 H 1.08003 * 124.60777 * 179.97438 * 21 20 19 40 40 H 1.08002 * 123.42355 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6086 1.9804 -0.8441 5 6 3.5424 1.4441 -0.1181 6 1 4.1447 1.8897 0.6597 7 6 4.1479 0.8768 -1.2192 8 7 3.4145 0.3338 -2.1662 9 14 6.0101 0.8794 -1.3660 10 1 6.5577 -0.3512 -0.7406 11 1 6.3936 0.9186 -2.8001 12 1 6.5595 2.0729 -0.6739 13 7 1.6466 2.1010 1.2529 14 6 1.5040 3.5507 1.0634 15 1 2.1721 3.8991 0.2759 16 6 1.7889 4.2999 2.3858 17 6 0.3692 4.4463 2.9770 18 7 -0.5404 4.4073 1.8259 19 6 -1.8602 4.8357 1.8557 20 16 -2.8833 4.9183 0.4950 21 6 -4.2290 5.5203 1.4465 22 6 -3.8869 5.6399 2.7222 23 6 -2.5176 5.2552 2.9820 24 6 -1.9144 5.3020 4.2799 25 7 -1.4358 5.3393 5.3096 26 6 0.0674 3.8982 0.7404 27 8 -0.4586 3.7426 -0.3414 28 1 -0.3634 0.4372 -0.9300 29 1 -0.3633 -1.0241 0.0864 30 1 -0.3634 0.5868 0.8437 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8405 -0.0657 -2.9407 34 1 2.3032 1.8956 1.9910 35 1 2.2337 5.2762 2.1929 36 1 2.4253 3.7062 3.0418 37 1 0.2748 5.3978 3.5003 38 1 0.1547 3.6205 3.6553 39 1 -5.2034 5.7608 1.0475 40 1 -4.5610 5.9939 3.4882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566428529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:54 Heat of formation + Delta-G solvation = 17.765774 kcal Electronic energy + Delta-G solvation = -24569.543492 eV Core-core repulsion = 21089.462109 eV Total energy + Delta-G solvation = -3480.081384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17344 -39.29582 -38.12518 -37.33280 -36.92073 -34.79422 -33.46456 -31.66477 -29.74217 -28.70743 -27.09158 -26.11341 -24.58298 -23.27348 -21.88519 -21.55684 -21.42477 -19.38628 -18.60625 -18.22374 -17.76464 -16.74403 -16.69422 -16.37282 -15.90380 -15.55938 -15.38243 -15.05865 -14.95746 -14.74459 -14.66482 -14.39344 -14.23529 -13.76137 -13.54915 -13.48949 -13.30582 -13.10469 -13.04922 -12.89238 -12.66980 -12.50823 -12.41099 -12.07608 -11.87069 -11.56965 -11.47200 -11.31482 -11.12542 -10.98095 -10.44958 -9.48779 -9.26387 -9.07036 -8.05678 -6.27490 -0.37917 0.15207 0.94558 1.05444 1.35387 1.41616 1.43354 1.51586 1.61738 1.64958 2.41590 2.43965 3.03006 3.16574 3.22057 3.32592 3.58359 3.78757 3.90479 4.10512 4.29868 4.31834 4.56101 4.57186 4.70987 4.81672 4.82217 4.85444 4.90303 5.04690 5.14144 5.18124 5.32545 5.34703 5.47162 5.53534 5.59236 5.74947 6.05966 6.10182 6.27146 6.46441 6.70391 6.75927 6.97239 7.44490 8.93226 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.003747 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.711309 B = 7470.310726 C = 8094.680246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.558 4.558 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.662 5.662 14 C 0.064 3.936 15 H 0.074 0.926 16 C -0.120 4.120 17 C 0.107 3.893 18 N -0.529 5.529 19 C 0.070 3.930 20 S 0.238 5.762 21 C -0.241 4.241 22 C -0.070 4.070 23 C -0.134 4.134 24 C 0.296 3.704 25 N -0.456 5.456 26 C 0.526 3.474 27 O -0.519 6.519 28 H 0.021 0.979 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.350 0.650 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.210 0.790 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 11.687 9.470 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 C 0.117 3.883 4 H 0.016 0.984 5 C -0.597 4.597 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.296 5.296 14 C -0.050 4.050 15 H 0.092 0.908 16 C -0.158 4.158 17 C -0.016 4.016 18 N -0.253 5.253 19 C -0.150 4.150 20 S 0.501 5.499 21 C -0.376 4.376 22 C -0.099 4.099 23 C -0.156 4.156 24 C -0.019 4.019 25 N -0.134 5.134 26 C 0.314 3.686 27 O -0.392 6.392 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.227 0.773 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.529 11.108 8.667 18.854 hybrid contribution 1.677 0.177 0.467 1.750 sum -10.852 11.285 9.134 18.126 Atomic orbital electron populations 1.21524 0.97181 0.99580 0.99624 1.21349 0.93623 0.98571 1.00358 1.18967 0.92083 0.91354 0.85916 0.98404 1.22149 0.93323 1.38304 1.05966 0.91825 1.25702 1.02199 0.94760 0.95462 1.70035 1.36597 1.38589 1.09904 0.85632 0.80827 0.78648 0.76936 1.20213 1.21588 1.19018 1.60551 1.54454 1.04571 1.10046 1.21990 0.91055 0.92099 0.99896 0.90768 1.22945 0.95409 1.02921 0.94487 1.22498 0.88622 1.03607 0.86844 1.45311 1.07959 1.58077 1.13915 1.22257 0.89599 1.02130 1.01053 1.84475 1.00025 1.61022 1.04368 1.25911 1.04774 1.09896 0.97004 1.20936 0.91281 1.00045 0.97655 1.16300 0.95989 1.18151 0.85123 1.24920 0.92532 0.92456 0.91955 1.81294 1.09075 1.11432 1.11618 1.21755 0.90126 0.74350 0.82414 1.90688 1.70989 1.52324 1.25244 0.96018 0.93483 0.93271 0.92009 0.94630 0.92986 0.82914 0.87119 0.86190 0.88861 0.89790 0.77349 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 9.85 71.98 0.71 -4.51 16 2 C -0.10 -4.82 5.45 30.59 0.17 -4.66 16 3 C 0.23 10.92 1.82 44.17 0.08 11.00 16 4 H 0.00 -0.12 7.80 -2.39 -0.02 -0.14 16 5 C -0.56 -28.58 8.46 25.60 0.22 -28.37 16 6 H 0.06 3.07 7.70 -2.91 -0.02 3.05 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.95 11.29 21.45 0.24 -51.70 16 9 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.66 -25.28 5.48 -473.35 -2.59 -27.88 16 14 C 0.06 2.15 3.06 44.91 0.14 2.29 16 15 H 0.07 2.87 7.74 -2.39 -0.02 2.86 16 16 C -0.12 -2.71 6.84 31.65 0.22 -2.50 16 17 C 0.11 2.51 5.52 86.83 0.48 2.99 16 18 N -0.53 -15.12 3.10 -634.48 -1.97 -17.09 16 19 C 0.07 1.78 6.96 83.30 0.58 2.36 16 20 S 0.24 5.45 20.92 -56.49 -1.18 4.27 16 21 C -0.24 -3.29 11.10 66.66 0.74 -2.55 16 22 C -0.07 -1.02 10.35 22.73 0.24 -0.79 16 23 C -0.13 -2.86 5.88 -20.71 -0.12 -2.98 16 24 C 0.30 6.91 12.37 88.33 1.09 8.00 16 25 N -0.46 -11.90 18.20 19.00 0.35 -11.55 16 26 C 0.53 18.65 7.59 87.90 0.67 19.32 16 27 O -0.52 -21.89 15.92 -3.04 -0.05 -21.94 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.05 2.03 7.62 -2.38 -0.02 2.01 16 31 H 0.06 3.37 5.96 -2.39 -0.01 3.36 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.35 12.16 7.62 -89.69 -0.68 11.48 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.12 2.31 7.53 -2.39 -0.02 2.29 16 37 H 0.09 1.98 6.44 -2.38 -0.02 1.97 16 38 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 39 H 0.21 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -66.04 349.78 2.87 -63.18 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.40 Total: 17.65 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.65 Total: 1.08 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.97 Total: -108.22 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.18 Total: 4.27 kcal Total: -66.04 2.87 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.942 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds