Wall clock time and date at job start Tue Mar 31 2020 12:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32588 * 123.42306 * 2 1 4 4 S 1.75470 * 110.78196 * 179.70393 * 3 2 1 5 5 C 1.70443 * 92.52559 * 0.34471 * 4 3 2 6 6 N 1.38804 * 124.64752 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00107 * 359.69964 * 6 5 4 8 8 O 1.21577 * 120.00204 * 5.07648 * 7 6 5 9 9 N 1.34775 * 119.99747 * 185.07371 * 7 6 5 10 10 C 1.46926 * 120.63415 * 354.49275 * 9 7 6 11 11 C 1.52764 * 109.00446 * 233.57966 * 10 9 7 12 12 C 1.53037 * 109.38707 * 305.58806 * 11 10 9 13 13 C 1.50700 * 109.45081 * 181.25583 * 12 11 10 14 14 H 1.08000 * 119.99476 * 239.93544 * 13 12 11 15 15 C 1.37873 * 120.00094 * 59.93454 * 13 12 11 16 16 N 1.31513 * 120.00172 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47500 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46949 * 120.00094 * 17 15 13 20 20 H 1.48500 * 109.47122 * 240.00073 * 17 15 13 21 21 C 1.53041 * 109.53974 * 61.23710 * 12 11 10 22 22 C 1.46932 * 120.62780 * 174.76407 * 9 7 6 23 23 C 1.36994 * 110.70088 * 359.65985 * 5 4 3 24 24 C 1.43196 * 123.57872 * 180.28520 * 23 5 4 25 25 N 3.57698 * 86.68999 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47378 * 270.04478 * 1 2 3 27 27 H 1.09004 * 109.47099 * 30.04557 * 1 2 3 28 28 H 1.09003 * 109.47325 * 150.04315 * 1 2 3 29 29 H 1.07999 * 124.61342 * 359.95712 * 3 2 1 30 30 H 0.97007 * 120.00182 * 179.70451 * 6 5 4 31 31 H 1.08996 * 109.58423 * 353.40935 * 10 9 7 32 32 H 1.08997 * 109.59046 * 113.84682 * 10 9 7 33 33 H 1.09000 * 109.56472 * 185.55225 * 11 10 9 34 34 H 1.09004 * 109.38397 * 65.51215 * 11 10 9 35 35 H 1.09004 * 109.45765 * 301.21605 * 12 11 10 36 36 H 0.96996 * 120.00393 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.49783 * 178.68435 * 21 12 11 38 38 H 1.09000 * 109.52232 * 58.60517 * 21 12 11 39 39 H 1.09000 * 109.58850 * 246.15571 * 22 9 7 40 40 H 1.08996 * 109.58469 * 6.44438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2373 1.1066 0.0000 4 16 3.9495 0.7226 0.0085 5 6 3.6502 -0.9553 0.0017 6 7 4.6357 -1.9327 0.0038 7 6 5.9361 -1.5785 0.0055 8 8 6.2469 -0.4068 0.0984 9 7 6.8920 -2.5233 -0.0957 10 6 6.5388 -3.9494 -0.0875 11 6 7.3519 -4.6570 0.9951 12 6 8.8407 -4.3790 0.7755 13 6 9.6462 -5.1015 1.8244 14 1 10.2803 -4.5436 2.4975 15 6 9.5736 -6.4747 1.9248 16 7 8.8018 -7.1541 1.1048 17 14 10.5726 -7.3703 3.2245 18 1 11.3543 -6.3850 4.0141 19 1 9.6572 -8.1131 4.1277 20 1 11.4999 -8.3247 2.5655 21 6 9.1012 -2.8745 0.8791 22 6 8.3076 -2.1466 -0.2104 23 6 2.3035 -1.2070 0.0010 24 6 1.7442 -2.5252 0.0017 25 7 1.3005 -3.5710 0.0016 26 1 -0.3634 0.0008 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3634 -0.8904 -0.5132 29 1 1.8334 2.1082 -0.0007 30 1 4.3886 -2.8708 0.0039 31 1 5.4755 -4.0613 0.1244 32 1 6.7684 -4.3884 -1.0583 33 1 7.1710 -5.7307 0.9443 34 1 7.0527 -4.2835 1.9745 35 1 9.1338 -4.7310 -0.2136 36 1 8.7509 -8.1201 1.1752 37 1 10.1654 -2.6795 0.7458 38 1 8.7858 -2.5169 1.8593 39 1 8.6842 -2.4356 -1.1916 40 1 8.4105 -1.0692 -0.0822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580723081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:41 Heat of formation + Delta-G solvation = 28.320725 kcal Electronic energy + Delta-G solvation = -23953.987661 eV Core-core repulsion = 20474.363974 eV Total energy + Delta-G solvation = -3479.623687 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81175 -38.70776 -37.33017 -36.00211 -35.15743 -33.73883 -31.54936 -30.40923 -29.97330 -27.84629 -26.42425 -24.32582 -23.18619 -22.48866 -21.32426 -20.14797 -19.48612 -18.68785 -17.76267 -16.63168 -16.22090 -16.02451 -15.79436 -15.02293 -14.61256 -14.50657 -14.06613 -13.96587 -13.41899 -13.34084 -13.24495 -13.13917 -12.98296 -12.82738 -12.68189 -12.32619 -12.22471 -11.87403 -11.81483 -11.53760 -11.14760 -11.03268 -10.81426 -10.71289 -10.52229 -10.27213 -9.92882 -9.73025 -9.31526 -9.10935 -8.55516 -8.43917 -8.36348 -8.02438 -6.12539 -4.18798 0.68938 1.17371 1.83351 1.87469 2.44998 2.66260 2.96433 3.22141 3.31242 3.34693 3.44581 3.72270 4.06626 4.34021 4.65005 4.94266 5.14599 5.24955 5.27548 5.35653 5.40984 5.54229 5.60128 5.70843 5.83306 5.85160 5.97499 6.05245 6.14924 6.17957 6.22382 6.44519 6.48587 6.75201 6.92089 6.94112 7.13635 7.49734 7.53976 7.69069 7.78059 7.91692 8.24767 8.28919 8.84929 9.47312 10.93229 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.003141 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.963098 B = 8910.937093 C = 9839.100070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.038 4.038 3 C -0.300 4.300 4 S 0.324 5.676 5 C 0.100 3.900 6 N -0.648 5.648 7 C 0.697 3.303 8 O -0.566 6.566 9 N -0.600 5.600 10 C 0.104 3.896 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.125 4.125 22 C 0.126 3.874 23 C -0.144 4.144 24 C 0.278 3.722 25 N -0.430 5.430 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.168 0.832 30 H 0.416 0.584 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 15.270 -4.365 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.050 4.050 3 C -0.435 4.435 4 S 0.586 5.414 5 C -0.124 4.124 6 N -0.295 5.295 7 C 0.399 3.601 8 O -0.445 6.445 9 N -0.334 5.334 10 C -0.018 4.018 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.163 4.163 22 C 0.005 3.995 23 C -0.166 4.166 24 C -0.037 4.037 25 N -0.108 5.108 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.257 0.743 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.928 15.088 -4.352 19.131 hybrid contribution -0.843 -1.888 0.758 2.202 sum -11.771 13.201 -3.594 18.048 Atomic orbital electron populations 1.20517 0.89517 1.02878 1.02656 1.19222 0.96281 0.89165 1.00323 1.25773 1.00492 1.02347 1.14931 1.84422 0.99291 0.89373 1.68269 1.21927 0.90051 0.98444 1.01962 1.42343 1.03752 1.09231 1.74159 1.15878 0.79987 0.85657 0.78617 1.90796 1.79408 1.16298 1.58005 1.47505 1.06545 1.05940 1.73454 1.21996 0.98212 0.79147 1.02411 1.21991 0.97398 1.02647 0.94344 1.18636 0.91633 0.88935 0.97753 1.21214 1.25569 0.91575 1.16685 0.92516 1.24967 0.95413 0.97668 0.95947 1.69820 1.38625 1.07182 1.37436 0.86543 0.80105 0.79749 0.81669 1.19777 1.21041 1.20989 1.22043 0.98490 0.98864 0.96912 1.21775 0.77302 1.00533 0.99922 1.15775 0.89160 0.87746 1.23874 1.24925 0.93897 0.91955 0.92949 1.81290 1.07380 1.10880 1.11231 0.90785 0.90816 0.91731 0.81407 0.74317 0.92778 0.90987 0.87379 0.94053 0.95257 0.92922 0.91636 0.92711 0.91627 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.95 36.01 0.36 -0.38 16 2 C -0.04 -0.37 6.00 -104.01 -0.62 -1.00 16 3 C -0.30 -2.64 10.89 28.83 0.31 -2.32 16 4 S 0.32 3.61 19.97 -107.50 -2.15 1.46 16 5 C 0.10 1.28 6.98 -14.84 -0.10 1.18 16 6 N -0.65 -9.03 5.28 -16.00 -0.08 -9.11 16 7 C 0.70 11.07 8.25 -86.92 -0.72 10.36 16 8 O -0.57 -9.60 13.20 5.30 0.07 -9.53 16 9 N -0.60 -9.80 2.98 -178.76 -0.53 -10.34 16 10 C 0.10 1.74 6.36 -3.93 -0.02 1.71 16 11 C -0.13 -2.62 5.14 -26.83 -0.14 -2.76 16 12 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 13 C -0.51 -13.13 8.56 -34.44 -0.29 -13.43 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 16 N -0.89 -23.84 11.31 55.43 0.63 -23.21 16 17 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 22 C 0.13 2.06 6.44 -3.71 -0.02 2.03 16 23 C -0.14 -1.74 5.88 -105.91 -0.62 -2.36 16 24 C 0.28 3.77 14.23 -22.47 -0.32 3.45 16 25 N -0.43 -6.60 18.54 41.84 0.78 -5.82 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.53 7.68 -51.93 -0.40 0.14 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.42 5.53 5.64 -40.82 -0.23 5.30 16 31 H 0.05 0.79 5.65 -51.93 -0.29 0.50 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.11 2.56 6.03 -51.93 -0.31 2.24 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.33 6.99 -51.93 -0.36 0.97 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -28.15 344.71 -8.68 -36.84 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.94 Total: 2.68 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.62 Total: -3.59 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.79 Total: -48.48 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.15 Total: 1.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.15 -8.68 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580723081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.157 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds