Wall clock time and date at job start Tue Mar 31 2020 12:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32588 * 123.42306 * 2 1 4 4 S 1.75470 * 110.78196 * 179.70393 * 3 2 1 5 5 C 1.70443 * 92.52559 * 0.34471 * 4 3 2 6 6 N 1.38804 * 124.64752 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00107 * 359.69964 * 6 5 4 8 8 O 1.21577 * 120.00204 * 5.07648 * 7 6 5 9 9 N 1.34775 * 119.99747 * 185.07371 * 7 6 5 10 10 C 1.46926 * 120.63415 * 354.49275 * 9 7 6 11 11 C 1.52764 * 109.00446 * 233.57966 * 10 9 7 12 12 C 1.53037 * 109.38707 * 305.58806 * 11 10 9 13 13 C 1.50700 * 109.45081 * 181.25583 * 12 11 10 14 14 H 1.08000 * 119.99476 * 239.93544 * 13 12 11 15 15 C 1.37873 * 120.00094 * 59.93454 * 13 12 11 16 16 N 1.31513 * 120.00172 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47500 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46949 * 120.00094 * 17 15 13 20 20 H 1.48500 * 109.47122 * 240.00073 * 17 15 13 21 21 C 1.53041 * 109.53974 * 61.23710 * 12 11 10 22 22 C 1.46932 * 120.62780 * 174.76407 * 9 7 6 23 23 C 1.36994 * 110.70088 * 359.65985 * 5 4 3 24 24 C 1.43196 * 123.57872 * 180.28520 * 23 5 4 25 25 N 3.57698 * 86.68999 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47378 * 270.04478 * 1 2 3 27 27 H 1.09004 * 109.47099 * 30.04557 * 1 2 3 28 28 H 1.09003 * 109.47325 * 150.04315 * 1 2 3 29 29 H 1.07999 * 124.61342 * 359.95712 * 3 2 1 30 30 H 0.97007 * 120.00182 * 179.70451 * 6 5 4 31 31 H 1.08996 * 109.58423 * 353.40935 * 10 9 7 32 32 H 1.08997 * 109.59046 * 113.84682 * 10 9 7 33 33 H 1.09000 * 109.56472 * 185.55225 * 11 10 9 34 34 H 1.09004 * 109.38397 * 65.51215 * 11 10 9 35 35 H 1.09004 * 109.45765 * 301.21605 * 12 11 10 36 36 H 0.96996 * 120.00393 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.49783 * 178.68435 * 21 12 11 38 38 H 1.09000 * 109.52232 * 58.60517 * 21 12 11 39 39 H 1.09000 * 109.58850 * 246.15571 * 22 9 7 40 40 H 1.08996 * 109.58469 * 6.44438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2373 1.1066 0.0000 4 16 3.9495 0.7226 0.0085 5 6 3.6502 -0.9553 0.0017 6 7 4.6357 -1.9327 0.0038 7 6 5.9361 -1.5785 0.0055 8 8 6.2469 -0.4068 0.0984 9 7 6.8920 -2.5233 -0.0957 10 6 6.5388 -3.9494 -0.0875 11 6 7.3519 -4.6570 0.9951 12 6 8.8407 -4.3790 0.7755 13 6 9.6462 -5.1015 1.8244 14 1 10.2803 -4.5436 2.4975 15 6 9.5736 -6.4747 1.9248 16 7 8.8018 -7.1541 1.1048 17 14 10.5726 -7.3703 3.2245 18 1 11.3543 -6.3850 4.0141 19 1 9.6572 -8.1131 4.1277 20 1 11.4999 -8.3247 2.5655 21 6 9.1012 -2.8745 0.8791 22 6 8.3076 -2.1466 -0.2104 23 6 2.3035 -1.2070 0.0010 24 6 1.7442 -2.5252 0.0017 25 7 1.3005 -3.5710 0.0016 26 1 -0.3634 0.0008 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3634 -0.8904 -0.5132 29 1 1.8334 2.1082 -0.0007 30 1 4.3886 -2.8708 0.0039 31 1 5.4755 -4.0613 0.1244 32 1 6.7684 -4.3884 -1.0583 33 1 7.1710 -5.7307 0.9443 34 1 7.0527 -4.2835 1.9745 35 1 9.1338 -4.7310 -0.2136 36 1 8.7509 -8.1201 1.1752 37 1 10.1654 -2.6795 0.7458 38 1 8.7858 -2.5169 1.8593 39 1 8.6842 -2.4356 -1.1916 40 1 8.4105 -1.0692 -0.0822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580723081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:41 Heat of formation + Delta-G solvation = 14.000842 kcal Electronic energy + Delta-G solvation = -23954.608617 eV Core-core repulsion = 20474.363974 eV Total energy + Delta-G solvation = -3480.244643 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02399 -39.71329 -38.72372 -37.08269 -36.22663 -35.44368 -33.16084 -31.87459 -30.98117 -28.62157 -28.06958 -25.55936 -24.62212 -23.92192 -22.55677 -21.27105 -20.67428 -19.92470 -18.95038 -18.37965 -17.42929 -17.16704 -16.98024 -16.51959 -16.02716 -15.52501 -15.35669 -15.00046 -14.78727 -14.69763 -14.42290 -14.27429 -14.25241 -14.07250 -13.83227 -13.38029 -13.30355 -13.20978 -13.05532 -12.86277 -12.64881 -12.45688 -12.30515 -12.17410 -11.97770 -11.71379 -11.49014 -11.03865 -11.02358 -10.83202 -10.43723 -9.81261 -9.26928 -9.02215 -8.11135 -6.23527 -0.27144 0.28862 0.95632 1.03075 1.38008 1.38986 1.42244 1.51409 1.62949 1.75034 2.41414 2.42190 2.49272 3.07366 3.16361 3.78023 3.92151 4.11715 4.23851 4.28382 4.34582 4.53985 4.57500 4.58098 4.67036 4.79789 4.87306 4.88029 4.91097 5.06563 5.08051 5.16636 5.31467 5.36687 5.41038 5.48510 5.61161 5.63280 5.96107 6.07388 6.36145 6.41306 6.45397 6.86795 7.02139 7.44770 8.92372 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.003141 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.963098 B = 8910.937093 C = 9839.100070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.049 4.049 3 C -0.272 4.272 4 S 0.319 5.681 5 C 0.075 3.925 6 N -0.646 5.646 7 C 0.699 3.301 8 O -0.577 6.577 9 N -0.605 5.605 10 C 0.117 3.883 11 C -0.116 4.116 12 C 0.045 3.955 13 C -0.531 4.531 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.281 1.281 21 C -0.115 4.115 22 C 0.134 3.866 23 C -0.143 4.143 24 C 0.293 3.707 25 N -0.466 5.466 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.204 0.796 30 H 0.417 0.583 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.008 0.992 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 17.364 -4.550 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.060 4.060 3 C -0.407 4.407 4 S 0.582 5.418 5 C -0.148 4.148 6 N -0.294 5.294 7 C 0.401 3.599 8 O -0.457 6.457 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.155 4.155 12 C 0.027 3.973 13 C -0.569 4.569 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.773 3.227 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.153 4.153 22 C 0.012 3.988 23 C -0.166 4.166 24 C -0.022 4.022 25 N -0.144 5.144 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.221 0.779 30 H 0.257 0.743 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.076 17.209 -4.537 21.507 hybrid contribution -0.544 -2.450 0.827 2.643 sum -12.620 14.759 -3.709 19.770 Atomic orbital electron populations 1.20584 0.87779 1.03651 1.03414 1.19466 0.97444 0.88335 1.00768 1.26057 0.98579 1.03612 1.12488 1.84430 1.01422 0.88283 1.67681 1.22145 0.89971 0.99006 1.03694 1.42185 1.03363 1.09585 1.74220 1.15864 0.80388 0.85315 0.78356 1.90793 1.79937 1.16565 1.58420 1.47439 1.06795 1.05687 1.74025 1.21758 0.98647 0.79189 1.00972 1.21730 0.97250 1.01316 0.95197 1.18609 0.92121 0.91013 0.95563 1.21582 1.25872 0.92132 1.17285 0.93249 1.25627 0.96424 0.98498 0.97686 1.69937 1.39538 1.07207 1.38556 0.85680 0.78829 0.78616 0.79568 1.19463 1.20998 1.20703 1.21880 0.99455 0.96553 0.97440 1.21692 0.77028 1.00667 0.99427 1.16065 0.89274 0.87810 1.23421 1.25164 0.92999 0.91997 0.91995 1.81298 1.08676 1.11912 1.12550 0.90008 0.88291 0.92761 0.77922 0.74251 0.90669 0.90408 0.90253 0.95431 0.97351 0.93028 0.91045 0.93830 0.90282 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.95 71.24 0.71 -0.46 16 2 C -0.05 -0.82 6.00 -19.39 -0.12 -0.94 16 3 C -0.27 -3.80 10.89 66.66 0.73 -3.07 16 4 S 0.32 6.39 19.97 -56.49 -1.13 5.26 16 5 C 0.07 1.80 6.98 83.30 0.58 2.38 16 6 N -0.65 -17.37 5.28 -322.79 -1.70 -19.08 16 7 C 0.70 21.41 8.25 179.05 1.48 22.89 16 8 O -0.58 -18.76 13.20 -3.96 -0.05 -18.81 16 9 N -0.61 -19.22 2.98 -837.75 -2.50 -21.72 16 10 C 0.12 3.86 6.36 86.22 0.55 4.41 16 11 C -0.12 -4.96 5.14 30.53 0.16 -4.81 16 12 C 0.05 2.08 2.07 -11.51 -0.02 2.05 16 13 C -0.53 -27.73 8.56 25.60 0.22 -27.51 16 14 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 15 C 0.02 0.87 5.30 84.65 0.45 1.32 16 16 N -0.91 -49.82 11.31 21.45 0.24 -49.58 16 17 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.11 -4.32 5.30 30.67 0.16 -4.16 16 22 C 0.13 4.20 6.44 86.36 0.56 4.76 16 23 C -0.14 -3.24 5.88 -20.70 -0.12 -3.36 16 24 C 0.29 7.72 14.23 88.33 1.26 8.98 16 25 N -0.47 -14.17 18.54 19.00 0.35 -13.82 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.72 8.13 -2.38 -0.02 0.70 16 28 H 0.05 0.79 7.68 -2.39 -0.02 0.77 16 29 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.42 10.78 5.64 -92.70 -0.52 10.26 16 31 H 0.08 2.16 5.65 -2.39 -0.01 2.15 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.08 3.88 6.03 -2.39 -0.01 3.86 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.01 0.41 8.14 -2.38 -0.02 0.40 16 36 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.10 2.85 6.99 -2.39 -0.02 2.83 16 Total: -1.00 -61.14 344.71 4.38 -56.76 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.56 Total: 14.06 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.58 Total: 2.48 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.60 Total: -104.19 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.13 Total: 5.26 kcal Total: -61.14 4.38 -56.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580723081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.758 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds