Wall clock time and date at job start Tue Mar 31 2020 12:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00454 * 2 1 4 4 H 1.48504 * 109.47226 * 85.84365 * 3 2 1 5 5 H 1.48506 * 109.47612 * 205.84454 * 3 2 1 6 6 H 1.48500 * 109.47305 * 325.84285 * 3 2 1 7 7 C 1.37884 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99638 * 3.10889 * 7 2 1 9 9 C 1.50701 * 120.00011 * 183.10679 * 7 2 1 10 10 C 1.53001 * 115.54962 * 271.71013 * 9 7 2 11 11 S 1.81401 * 109.47346 * 294.26391 * 10 9 7 12 12 O 1.42099 * 110.54399 * 297.57128 * 11 10 9 13 13 O 1.42103 * 110.54327 * 74.31944 * 11 10 9 14 14 N 1.65590 * 104.45090 * 185.94654 * 11 10 9 15 15 C 1.46502 * 120.00427 * 65.00008 * 14 11 10 16 16 C 1.52997 * 109.47409 * 164.99844 * 15 14 11 17 17 C 1.52575 * 109.22863 * 296.23876 * 16 15 14 18 18 C 1.53096 * 109.95687 * 169.00530 * 17 16 15 19 19 S 1.81748 * 108.84353 * 63.02319 * 18 17 16 20 20 C 1.81744 * 102.21896 * 306.73599 * 19 18 17 21 21 C 1.52580 * 109.22211 * 174.99799 * 16 15 14 22 22 C 1.52996 * 117.49747 * 126.04413 * 9 7 2 23 23 C 1.52991 * 117.49795 * 57.38276 * 9 7 2 24 24 H 0.96995 * 119.99652 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47210 * 54.26276 * 10 9 7 26 26 H 1.08998 * 109.47312 * 174.26427 * 10 9 7 27 27 H 0.97001 * 120.00034 * 244.99990 * 14 11 10 28 28 H 1.08998 * 109.46576 * 285.00321 * 15 14 11 29 29 H 1.09005 * 109.46971 * 44.99882 * 15 14 11 30 30 H 1.09002 * 109.22013 * 55.59943 * 16 15 14 31 31 H 1.09002 * 109.38771 * 289.15217 * 17 16 15 32 32 H 1.08998 * 109.39153 * 48.85098 * 17 16 15 33 33 H 1.09004 * 109.57271 * 303.21351 * 18 17 16 34 34 H 1.08999 * 109.57466 * 182.83410 * 18 17 16 35 35 H 1.09001 * 109.58052 * 293.45753 * 20 19 18 36 36 H 1.09003 * 109.57914 * 173.07382 * 20 19 18 37 37 H 1.08999 * 109.39431 * 311.14362 * 21 16 15 38 38 H 1.08995 * 109.39018 * 70.95434 * 21 16 15 39 39 H 1.09002 * 117.50276 * 359.97438 * 22 9 7 40 40 H 1.09003 * 117.50017 * 145.02195 * 22 9 7 41 41 H 1.09000 * 117.49870 * 214.97416 * 23 9 7 42 42 H 1.09005 * 117.50333 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4089 2.0970 1.3964 5 1 3.5880 1.4163 -0.6103 6 1 1.4935 2.6256 -0.7861 7 6 2.0045 -1.1941 -0.0005 8 1 1.4656 -2.1287 -0.0517 9 6 3.5099 -1.1952 0.0702 10 6 4.2338 -1.1164 -1.2754 11 16 3.9039 -2.6241 -2.2287 12 8 4.4128 -3.7643 -1.5504 13 8 2.5795 -2.6086 -2.7437 14 7 4.8652 -2.4838 -3.5697 15 6 6.3235 -2.4869 -3.4292 16 6 6.9671 -2.7215 -4.7972 17 6 6.5780 -4.1067 -5.3048 18 6 6.9787 -4.2562 -6.7748 19 16 8.7869 -4.1288 -6.9063 20 6 9.1247 -2.5584 -6.0561 21 6 8.4825 -2.6000 -4.6669 22 6 4.1645 -2.0241 1.1771 23 6 4.1614 -0.4959 1.2649 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.2497 -1.8308 26 1 5.3063 -1.0211 -1.1060 27 1 4.4628 -2.3995 -4.4482 28 1 6.6523 -1.5263 -3.0328 29 1 6.6210 -3.2829 -2.7464 30 1 6.6056 -1.9686 -5.4977 31 1 7.0881 -4.8658 -4.7117 32 1 5.5003 -4.2380 -5.2082 33 1 6.5131 -3.4650 -7.3625 34 1 6.6532 -5.2284 -7.1450 35 1 8.7011 -1.7340 -6.6297 36 1 10.2015 -2.4211 -5.9567 37 1 8.7272 -1.6850 -4.1275 38 1 8.8684 -3.4584 -4.1171 39 1 3.5064 -2.5684 1.8544 40 1 5.1111 -2.5130 0.9468 41 1 5.1060 0.0199 1.0923 42 1 3.5013 -0.0347 1.9995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582043984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:14 Heat of formation + Delta-G solvation = -62.238701 kcal Electronic energy + Delta-G solvation = -23441.648955 eV Core-core repulsion = 20061.249517 eV Total energy + Delta-G solvation = -3380.399438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.43924 -37.18023 -36.36338 -35.23120 -34.18182 -32.19655 -31.85985 -28.64336 -28.54250 -25.56935 -23.95383 -23.35736 -21.76728 -20.77397 -19.64469 -18.71912 -17.36918 -16.91317 -16.70723 -16.25307 -15.41281 -15.11193 -14.91098 -14.72277 -14.52395 -14.24549 -14.05271 -13.90961 -13.20557 -13.15458 -13.05708 -12.75699 -12.55637 -12.36000 -12.05675 -11.73167 -11.44461 -11.33834 -11.26757 -11.13674 -11.07425 -11.00115 -10.70048 -10.68617 -10.42395 -10.16576 -9.98357 -9.75332 -9.38471 -9.19774 -8.70472 -8.50175 -7.99547 -6.19833 -4.27940 0.88481 1.46349 2.21743 3.19025 3.26326 3.29160 3.32275 4.15102 4.31542 4.32148 4.39639 4.41219 4.62414 4.74223 4.81582 4.86290 4.87762 5.01462 5.03554 5.11043 5.24833 5.33819 5.38272 5.43243 5.48525 5.58597 5.61431 5.66971 5.77164 5.88232 5.94733 5.99581 6.06881 6.15162 6.38504 6.61670 6.84134 7.02182 7.10312 7.55796 8.33648 8.85297 9.40852 10.91614 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003375 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.221131 B = 8294.863113 C = 8442.300456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.088 3.912 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.256 1.256 6 H -0.290 1.290 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.575 4.575 11 S 2.614 3.386 12 O -0.966 6.966 13 O -0.940 6.940 14 N -1.133 6.133 15 C 0.121 3.879 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.079 4.079 19 S -0.276 6.276 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.177 4.177 23 C -0.185 4.185 24 H 0.267 0.733 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.412 0.588 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.228 -2.686 -11.297 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.117 4.117 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.217 1.217 7 C -0.547 4.547 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.706 4.706 11 S 2.710 3.290 12 O -0.956 6.956 13 O -0.930 6.930 14 N -0.890 5.890 15 C -0.006 4.006 16 C -0.121 4.121 17 C -0.161 4.161 18 C -0.227 4.227 19 S -0.050 6.050 20 C -0.227 4.227 21 C -0.158 4.158 22 C -0.214 4.214 23 C -0.224 4.224 24 H 0.077 0.923 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.245 0.755 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.273 -4.042 -11.451 21.940 hybrid contribution -0.256 2.627 0.181 2.645 sum 18.017 -1.415 -11.270 21.298 Atomic orbital electron populations 1.69893 1.06403 1.27336 1.48118 1.24965 0.94554 0.99003 0.93192 0.86908 0.80778 0.83454 0.78665 1.20164 1.18034 1.21711 1.20352 0.85720 0.95462 1.53144 0.89523 1.18852 0.94933 1.02649 0.83699 1.30275 1.07177 1.20960 1.12228 1.04953 0.73342 0.77047 0.73698 1.93510 1.80723 1.46538 1.74824 1.93604 1.34787 1.87278 1.77380 1.56053 1.15717 1.92492 1.24782 1.21277 0.79853 1.01792 0.97657 1.21336 0.95313 0.98141 0.97309 1.21821 1.03049 0.97267 0.93942 1.23482 0.93080 1.06056 1.00082 1.86925 1.10118 1.31659 1.76301 1.23429 1.04572 0.96555 0.98109 1.21752 0.94215 1.03920 0.95924 1.23033 1.01476 0.92946 1.03933 1.22985 1.01112 0.95099 1.03203 0.92266 0.85528 0.87742 0.75482 0.91826 0.89968 0.90259 0.90071 0.89842 0.89796 0.87655 0.89825 0.87708 0.90192 0.90000 0.88624 0.89987 0.90683 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 20.72 24.90 -169.99 -4.23 16.48 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.26 -5.53 5.70 56.52 0.32 -5.20 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.09 8.80 -34.44 -0.30 -14.39 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.00 0.03 0.77 -155.67 -0.12 -0.09 16 10 C -0.57 -10.73 5.52 37.16 0.21 -10.53 16 11 S 2.61 48.50 5.21 -107.50 -0.56 47.94 16 12 O -0.97 -19.62 17.50 -57.54 -1.01 -20.62 16 13 O -0.94 -21.67 17.75 -57.54 -1.02 -22.69 16 14 N -1.13 -14.41 5.22 -10.61 -0.06 -14.47 16 15 C 0.12 1.22 5.49 -4.04 -0.02 1.19 16 16 C -0.10 -0.81 1.96 -91.05 -0.18 -0.99 16 17 C -0.12 -1.05 5.02 -26.90 -0.14 -1.18 16 18 C -0.08 -0.62 6.45 37.21 0.24 -0.38 16 19 S -0.28 -2.46 22.33 -107.50 -2.40 -4.86 16 20 C -0.08 -0.53 6.45 37.21 0.24 -0.29 16 21 C -0.12 -0.81 5.05 -26.89 -0.14 -0.94 16 22 C -0.18 -3.55 9.96 -26.70 -0.27 -3.82 16 23 C -0.19 -3.75 7.55 -26.70 -0.20 -3.95 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.13 2.35 6.76 -51.92 -0.35 2.00 16 26 H 0.10 1.53 8.09 -51.93 -0.42 1.11 16 27 H 0.41 4.51 8.28 -34.46 -0.29 4.23 16 28 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 30 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.08 0.74 8.06 -51.93 -0.42 0.33 16 32 H 0.08 0.77 7.17 -51.93 -0.37 0.40 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 38 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 39 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.96 7.23 -51.93 -0.38 1.58 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -34.28 354.19 -10.83 -45.11 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.89 Total: 6.54 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -0.77 Total: -32.99 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.72 Total: -40.25 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -2.03 Total: -43.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.23 Total: 16.48 kcal Atomic # 16 Polarization: 46.04 SS G_CDS: -2.96 Total: 43.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.28 -10.83 -45.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582043984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.126 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds