Wall clock time and date at job start Tue Mar 31 2020 12:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46958 * 2 1 4 4 C 1.31885 * 124.30159 * 90.00627 * 3 2 1 5 5 C 1.45078 * 114.80997 * 179.97438 * 4 3 2 6 6 C 1.39753 * 111.99742 * 359.97438 * 5 4 3 7 7 N 1.33896 * 119.10699 * 180.02562 * 6 5 4 8 8 C 1.31286 * 121.03983 * 359.97438 * 7 6 5 9 9 N 1.32084 * 122.17952 * 0.02562 * 8 7 6 10 10 C 1.32474 * 121.19015 * 359.97438 * 9 8 7 11 11 N 1.38326 * 120.52915 * 180.02562 * 10 9 8 12 12 C 1.47441 * 110.99979 * 239.87071 * 11 10 9 13 13 C 1.54325 * 107.23529 * 123.25718 * 12 11 10 14 14 C 1.55142 * 103.01431 * 22.28419 * 13 12 11 15 15 O 1.42899 * 110.98966 * 82.48047 * 14 13 12 16 16 C 1.50701 * 110.98952 * 206.25433 * 14 13 12 17 17 H 1.08005 * 120.00386 * 118.54574 * 16 14 13 18 18 C 1.37884 * 120.00017 * 298.55022 * 16 14 13 19 19 N 1.31513 * 119.99849 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99714 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47057 * 90.00054 * 20 18 16 22 22 H 1.48501 * 109.46898 * 209.99561 * 20 18 16 23 23 H 1.48500 * 109.47213 * 329.99416 * 20 18 16 24 24 C 1.47849 * 111.00087 * 0.71221 * 11 10 9 25 25 S 1.75357 * 124.30287 * 270.00009 * 3 2 1 26 26 H 1.09000 * 109.47372 * 59.99538 * 1 2 3 27 27 H 1.08992 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46744 * 300.00363 * 1 2 3 29 29 H 1.09003 * 109.46917 * 240.00391 * 2 1 3 30 30 H 1.08995 * 109.46935 * 120.00295 * 2 1 3 31 31 H 1.08000 * 122.59260 * 359.97306 * 4 3 2 32 32 H 1.07999 * 118.91107 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.89073 * 242.65860 * 12 11 10 34 34 H 1.09003 * 109.88847 * 3.85454 * 12 11 10 35 35 H 1.08999 * 110.70624 * 140.66421 * 13 12 11 36 36 H 1.09001 * 110.70533 * 263.73118 * 13 12 11 37 37 H 0.96696 * 114.00307 * 61.45085 * 15 14 13 38 38 H 0.96998 * 119.99359 * 179.97438 * 19 18 16 39 39 H 1.08998 * 110.37324 * 332.47058 * 24 11 10 40 40 H 1.09003 * 110.36965 * 94.81218 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2802 2.1216 1.0895 5 6 2.7576 3.4705 0.8502 6 6 2.8593 3.7555 -0.5141 7 7 3.2881 4.9649 -0.8967 8 6 3.6112 5.8796 -0.0121 9 7 3.5326 5.6598 1.2879 10 6 3.1193 4.4943 1.7629 11 7 3.0418 4.2791 3.1271 12 6 3.9070 3.1570 3.5351 13 6 4.8787 3.6950 4.6065 14 6 4.1376 4.9425 5.1554 15 8 3.1706 4.5715 6.1399 16 6 5.1124 5.9478 5.7126 17 1 5.1761 6.9354 5.2801 18 6 5.9232 5.6066 6.7744 19 7 5.8454 4.4041 7.3013 20 14 7.1320 6.8524 7.4645 21 1 6.4742 7.6370 8.5401 22 1 8.3115 6.1421 8.0207 23 1 7.5712 7.7685 6.3814 24 6 3.4501 5.4855 3.8779 25 16 2.3617 2.3526 -1.4486 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1386 1.7221 2.0828 32 1 3.9526 6.8438 -0.3589 33 1 3.3003 2.3544 3.9543 34 1 4.4686 2.7904 2.6758 35 1 5.0291 2.9580 5.3953 36 1 5.8310 3.9760 4.1568 37 1 3.5475 4.1381 6.9178 38 1 6.4160 4.1641 8.0481 39 1 4.1525 6.0778 3.2914 40 1 2.5768 6.0821 4.1414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:09 Heat of formation + Delta-G solvation = 7.184627 kcal Electronic energy + Delta-G solvation = -24587.430341 eV Core-core repulsion = 21106.890124 eV Total energy + Delta-G solvation = -3480.540217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40762 -40.10610 -37.92149 -36.95257 -34.53825 -34.20820 -33.80271 -31.28702 -30.18769 -29.50417 -27.13320 -25.85741 -25.02040 -23.65268 -22.68605 -21.53927 -21.31200 -19.56246 -18.82667 -18.47264 -17.34931 -17.19640 -16.90284 -16.69706 -16.05715 -15.73042 -15.72065 -15.23567 -14.77148 -14.56648 -14.53809 -14.20630 -13.98843 -13.83542 -13.56809 -13.23812 -12.93366 -12.72731 -12.66687 -12.56147 -12.49000 -12.35516 -12.26743 -12.15998 -11.90114 -11.68559 -11.63966 -11.21718 -10.64263 -10.39027 -10.28949 -10.13888 -9.62159 -9.00527 -8.24634 -6.39006 -0.63029 -0.20311 0.05765 0.77056 1.11642 1.40315 1.43109 1.51846 2.29874 2.40169 2.64852 3.00520 3.12610 3.29744 3.40413 3.64613 3.79180 3.94270 4.00320 4.12047 4.24218 4.27229 4.41643 4.43302 4.60856 4.67438 4.76230 4.83790 4.92204 5.06124 5.06522 5.09140 5.15368 5.25657 5.28667 5.40916 5.42662 5.48274 5.75100 5.88346 5.94477 6.12305 6.64777 6.99977 7.31640 7.41572 8.81240 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.003658 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.471055 B = 7651.813000 C = 8537.425815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.199 4.199 6 C 0.074 3.926 7 N -0.529 5.529 8 C 0.329 3.671 9 N -0.583 5.583 10 C 0.394 3.606 11 N -0.464 5.464 12 C 0.066 3.934 13 C -0.132 4.132 14 C 0.239 3.761 15 O -0.586 6.586 16 C -0.561 4.561 17 H 0.053 0.947 18 C 0.036 3.964 19 N -0.907 5.907 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.278 1.278 23 H -0.273 1.273 24 C 0.071 3.929 25 S 0.190 5.810 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.233 0.767 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.376 0.624 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -9.753 -15.142 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.273 4.273 4 C -0.135 4.135 5 C -0.215 4.215 6 C -0.177 4.177 7 N -0.248 5.248 8 C 0.037 3.963 9 N -0.305 5.305 10 C 0.146 3.854 11 N -0.179 5.179 12 C -0.058 4.058 13 C -0.172 4.172 14 C 0.199 3.801 15 O -0.394 6.394 16 C -0.599 4.599 17 H 0.071 0.929 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.198 1.198 24 C -0.055 4.055 25 S 0.449 5.551 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.075 -9.237 -17.155 20.729 hybrid contribution 1.598 0.694 2.747 3.252 sum -5.477 -8.544 -14.409 17.624 Atomic orbital electron populations 1.21807 0.93449 1.03243 1.02135 1.20339 0.96763 0.86915 1.05176 1.24467 1.05766 1.02260 0.94842 1.20652 1.01602 0.90351 1.00880 1.20337 1.09973 0.97623 0.93598 1.24259 0.99984 0.98661 0.94746 1.68103 1.17028 1.00375 1.39335 1.25379 0.89641 0.98520 0.82779 1.68283 1.20319 1.23210 1.18712 1.20481 0.86025 0.88270 0.90624 1.60260 1.48739 1.08946 0.99992 1.22916 0.93147 0.91733 0.98027 1.23089 0.96823 1.00028 0.97216 1.19710 0.84914 0.90623 0.84865 1.86141 1.38133 1.81884 1.33247 1.21706 1.21049 0.99769 1.17403 0.92901 1.25604 0.97834 0.97021 0.96052 1.69780 1.40499 1.19605 1.24694 0.85573 0.78479 0.79193 0.78481 1.20206 1.20376 1.19811 1.22956 0.99435 0.90160 0.92934 1.83853 1.66798 0.98732 1.05708 0.92570 0.89913 0.93096 0.88627 0.88260 0.82643 0.75092 0.88491 0.92014 0.90543 0.93538 0.77548 0.92030 0.89841 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.05 -0.69 6.37 29.85 0.19 -0.50 16 3 C -0.16 -3.21 5.64 24.86 0.14 -3.07 16 4 C -0.11 -2.73 9.29 23.20 0.22 -2.51 16 5 C -0.20 -6.41 5.47 -20.27 -0.11 -6.52 16 6 C 0.07 2.24 7.69 84.74 0.65 2.90 16 7 N -0.53 -16.60 10.47 -196.05 -2.05 -18.65 16 8 C 0.33 10.08 12.27 180.95 2.22 12.30 16 9 N -0.58 -21.39 8.28 -196.43 -1.63 -23.02 16 10 C 0.39 14.69 6.19 133.95 0.83 15.52 16 11 N -0.46 -18.41 5.17 -689.51 -3.56 -21.98 16 12 C 0.07 2.46 5.49 86.65 0.48 2.93 16 13 C -0.13 -5.90 5.37 31.78 0.17 -5.72 16 14 C 0.24 11.75 0.87 -10.16 -0.01 11.75 16 15 O -0.59 -29.96 13.16 -148.98 -1.96 -31.92 16 16 C -0.56 -30.01 8.27 25.60 0.21 -29.80 16 17 H 0.05 2.87 7.79 -2.91 -0.02 2.84 16 18 C 0.04 1.88 5.29 84.66 0.45 2.32 16 19 N -0.91 -46.88 10.75 21.45 0.23 -46.65 16 20 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.07 3.22 5.55 86.77 0.48 3.70 16 25 S 0.19 4.19 23.20 -56.49 -1.31 2.88 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.16 3.79 7.29 -2.91 -0.02 3.77 16 32 H 0.23 5.09 8.06 -2.91 -0.02 5.07 16 33 H 0.10 3.25 7.88 -2.39 -0.02 3.23 16 34 H 0.06 2.13 7.03 -2.39 -0.02 2.11 16 35 H 0.08 3.53 7.54 -2.39 -0.02 3.51 16 36 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 37 H 0.38 19.22 7.56 -74.06 -0.56 18.66 16 38 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 39 H 0.08 3.86 6.48 -2.39 -0.02 3.84 16 40 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -60.91 340.34 -1.11 -62.02 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.52 Total: 31.38 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 6.63 Total: 2.19 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -7.01 Total: -110.30 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.96 Total: -31.92 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.31 Total: 2.88 kcal Total: -60.91 -1.11 -62.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.209 kcal (2) G-P(sol) polarization free energy of solvation -60.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds