Wall clock time and date at job start Tue Mar 31 2020 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31882 * 124.30422 * 90.00377 * 3 2 1 5 5 C 1.45075 * 114.81595 * 180.02562 * 4 3 2 6 6 C 1.39763 * 111.99166 * 359.97438 * 5 4 3 7 7 N 1.33899 * 119.10988 * 180.02562 * 6 5 4 8 8 C 1.31291 * 121.03770 * 359.97438 * 7 6 5 9 9 N 1.32084 * 122.17914 * 0.02562 * 8 7 6 10 10 C 1.32480 * 121.19279 * 359.97438 * 9 8 7 11 11 N 1.38322 * 120.52870 * 179.97438 * 10 9 8 12 12 C 1.47904 * 111.00170 * 239.89933 * 11 10 9 13 13 C 1.53987 * 107.06163 * 214.16046 * 12 11 10 14 14 C 1.54598 * 105.13864 * 1.21993 * 13 12 11 15 15 O 1.42891 * 110.72800 * 263.60138 * 14 13 12 16 16 C 1.50708 * 110.72051 * 140.49395 * 14 13 12 17 17 H 1.07997 * 120.00299 * 241.45915 * 16 14 13 18 18 C 1.37875 * 119.99556 * 61.45826 * 16 14 13 19 19 N 1.31513 * 120.00550 * 359.97438 * 18 16 14 20 20 Si 1.86810 * 119.99816 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46772 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47113 * 119.99988 * 20 18 16 23 23 H 1.48502 * 109.46978 * 240.00311 * 20 18 16 24 24 C 1.48531 * 110.99865 * 122.50839 * 11 10 9 25 25 S 1.75355 * 124.30148 * 269.70501 * 3 2 1 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 122.59504 * 359.97184 * 4 3 2 32 32 H 1.07992 * 118.90975 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.91975 * 333.51418 * 12 11 10 34 34 H 1.09001 * 109.91790 * 94.60589 * 12 11 10 35 35 H 1.08996 * 110.31257 * 120.14453 * 13 12 11 36 36 H 1.09004 * 110.30913 * 242.21314 * 13 12 11 37 37 H 0.96705 * 114.00246 * 298.54626 * 15 14 13 38 38 H 0.96997 * 120.00400 * 179.97438 * 19 18 16 39 39 H 1.09006 * 110.66558 * 278.15404 * 24 11 10 40 40 H 1.08997 * 110.66914 * 41.28311 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1216 1.0894 5 6 2.7564 3.4709 0.8503 6 6 2.8573 3.7562 -0.5142 7 7 3.2850 4.9659 -0.8969 8 6 3.6079 5.8808 -0.0123 9 7 3.5300 5.6608 1.2877 10 6 3.1178 4.4949 1.7628 11 7 3.0421 4.2792 3.1270 12 6 3.9115 3.1543 3.5349 13 6 3.2046 2.4362 4.6994 14 6 1.8769 3.2024 4.8998 15 8 2.0051 4.1728 5.9409 16 6 0.7502 2.2474 5.1995 17 1 -0.0962 2.1842 4.5316 18 6 0.8001 1.4543 6.3262 19 7 1.8309 1.5308 7.1392 20 14 -0.5962 0.2700 6.6973 21 1 -1.6290 0.3742 5.6353 22 1 -0.0695 -1.1176 6.7419 23 1 -1.2003 0.6127 8.0099 24 6 1.6653 3.8932 3.5293 25 16 2.3687 2.3501 -1.4486 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1385 1.7222 2.0828 32 1 3.9483 6.8452 -0.3592 33 1 4.0444 2.4661 2.7002 34 1 4.8800 3.5331 3.8614 35 1 3.0061 1.3968 4.4382 36 1 3.8136 2.4892 5.6020 37 1 2.2159 3.7959 6.8061 38 1 1.8658 0.9731 7.9320 39 1 1.0343 4.7756 3.6366 40 1 1.2353 3.1967 2.8096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:11 Heat of formation + Delta-G solvation = 29.170347 kcal Electronic energy + Delta-G solvation = -25193.294406 eV Core-core repulsion = 21713.707561 eV Total energy + Delta-G solvation = -3479.586844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23735 -38.55650 -36.87195 -35.20533 -33.56267 -32.53073 -32.22540 -29.95981 -28.36209 -28.17171 -25.19828 -24.98960 -23.73693 -22.65597 -21.37401 -20.19920 -19.68039 -18.14311 -17.69378 -16.77046 -16.37153 -15.69428 -15.13444 -14.98646 -14.75886 -14.39065 -14.28312 -13.97547 -13.86123 -13.35479 -13.20664 -12.78774 -12.60488 -12.26790 -11.98904 -11.67562 -11.62141 -11.42646 -11.41217 -11.24592 -10.91425 -10.88408 -10.80443 -10.69353 -10.49649 -10.41466 -9.96412 -9.36976 -9.32800 -8.83427 -8.70856 -8.25028 -8.14226 -8.07490 -6.32153 -4.41418 0.40086 0.93773 1.08182 1.77378 2.13626 3.13700 3.23758 3.26421 3.63857 3.70947 4.21262 4.22202 4.29138 4.64336 4.80444 4.94876 4.98460 5.16154 5.17897 5.28795 5.49045 5.60986 5.67354 5.68724 5.74177 5.82539 5.92721 6.01256 6.08696 6.11071 6.21088 6.24105 6.38318 6.66317 6.78235 6.89800 7.06838 7.29795 7.34091 7.49067 7.69149 8.01726 8.19800 8.61572 9.28350 9.44650 10.74982 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.005384 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.885041 B = 5199.085859 C = 6824.328629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.100 4.100 5 C -0.205 4.205 6 C 0.094 3.906 7 N -0.506 5.506 8 C 0.317 3.683 9 N -0.510 5.510 10 C 0.422 3.578 11 N -0.477 5.477 12 C 0.042 3.958 13 C -0.128 4.128 14 C 0.262 3.738 15 O -0.578 6.578 16 C -0.539 4.539 17 H 0.063 0.937 18 C 0.074 3.926 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.057 3.943 25 S 0.143 5.857 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.204 0.796 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.379 0.621 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -2.430 -13.537 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.276 4.276 4 C -0.129 4.129 5 C -0.222 4.222 6 C -0.158 4.158 7 N -0.223 5.223 8 C 0.025 3.975 9 N -0.225 5.225 10 C 0.174 3.826 11 N -0.200 5.200 12 C -0.084 4.084 13 C -0.167 4.167 14 C 0.222 3.778 15 O -0.386 6.386 16 C -0.578 4.578 17 H 0.081 0.919 18 C -0.129 4.129 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.069 4.069 25 S 0.402 5.598 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.221 0.779 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.037 -1.059 -15.514 15.683 hybrid contribution -0.842 -1.992 2.018 2.958 sum 1.195 -3.051 -13.497 13.889 Atomic orbital electron populations 1.21810 0.93855 1.02309 1.02861 1.20192 0.96623 0.88771 1.03716 1.24110 1.06822 1.01260 0.95443 1.20961 1.00148 0.91133 1.00667 1.21494 1.07614 0.97862 0.95249 1.23830 1.00130 0.97698 0.94117 1.67990 1.14684 0.99973 1.39647 1.24899 0.91422 0.97678 0.83532 1.68064 1.16415 1.21520 1.16547 1.20528 0.85254 0.86415 0.90407 1.61684 1.09744 1.41858 1.06681 1.23147 0.96753 0.89786 0.98700 1.22996 0.98815 0.98983 0.95874 1.19288 0.91053 0.84401 0.83105 1.86165 1.93954 1.37301 1.21160 1.21547 1.05797 1.21220 1.09215 0.91906 1.24976 0.95820 0.96510 0.95583 1.69727 1.29158 1.40411 1.13712 0.86437 0.82070 0.80370 0.78558 1.19617 1.20830 1.20715 1.23559 0.85800 0.99708 0.97809 1.84015 1.68349 1.00881 1.06596 0.91601 0.92524 0.91775 0.89162 0.90559 0.81964 0.77931 0.94059 0.90834 0.91407 0.90656 0.77082 0.92222 0.90234 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.55 6.37 -27.88 -0.18 -0.73 16 3 C -0.16 -2.09 5.64 -36.21 -0.20 -2.30 16 4 C -0.10 -1.54 7.21 -38.78 -0.28 -1.82 16 5 C -0.20 -3.50 5.07 -105.24 -0.53 -4.03 16 6 C 0.09 1.51 7.69 -16.08 -0.12 1.38 16 7 N -0.51 -8.00 10.47 -13.32 -0.14 -8.14 16 8 C 0.32 4.73 12.27 -92.33 -1.13 3.60 16 9 N -0.51 -9.15 10.43 -13.44 -0.14 -9.29 16 10 C 0.42 7.92 5.91 -154.57 -0.91 7.01 16 11 N -0.48 -9.65 5.35 -168.54 -0.90 -10.55 16 12 C 0.04 0.81 5.93 -2.76 -0.02 0.79 16 13 C -0.13 -2.72 5.26 -25.38 -0.13 -2.86 16 14 C 0.26 6.13 0.95 -89.91 -0.09 6.05 16 15 O -0.58 -14.66 13.09 -35.23 -0.46 -15.12 16 16 C -0.54 -13.39 8.15 -34.44 -0.28 -13.67 16 17 H 0.06 1.55 7.78 -52.49 -0.41 1.14 16 18 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 19 N -0.89 -22.37 11.00 55.43 0.61 -21.76 16 20 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.06 1.20 5.26 -1.90 -0.01 1.19 16 25 S 0.14 1.84 23.20 -107.50 -2.49 -0.66 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.16 2.67 6.22 -52.49 -0.33 2.34 16 32 H 0.20 2.12 8.06 -52.49 -0.42 1.69 16 33 H 0.04 0.73 5.69 -51.93 -0.30 0.43 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.46 7.84 -51.93 -0.41 1.05 16 36 H 0.07 1.70 7.98 -51.93 -0.41 1.28 16 37 H 0.38 9.62 7.46 45.56 0.34 9.96 16 38 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.06 1.25 4.91 -51.93 -0.25 0.99 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -27.72 336.50 -11.38 -39.10 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.28 Total: 11.73 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -3.62 Total: -4.78 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.57 Total: -49.74 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.46 Total: -15.12 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.49 Total: -0.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.72 -11.38 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.271 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds