Wall clock time and date at job start Tue Mar 31 2020 12:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47084 * 2 1 4 4 N 1.31290 * 118.90590 * 90.00490 * 3 2 1 5 5 C 1.33900 * 121.03596 * 179.97438 * 4 3 2 6 6 S 1.75750 * 131.28134 * 180.02562 * 5 4 3 7 7 C 1.75358 * 92.18606 * 179.97438 * 6 5 4 8 8 C 1.31884 * 111.38954 * 0.02562 * 7 6 5 9 9 C 1.39759 * 119.10750 * 359.97438 * 5 4 3 10 10 C 1.41844 * 117.54127 * 359.97438 * 9 5 4 11 11 N 1.38333 * 120.52767 * 179.97438 * 10 9 5 12 12 C 1.47448 * 110.99709 * 59.87837 * 11 10 9 13 13 C 1.54318 * 107.23357 * 123.25608 * 12 11 10 14 14 C 1.55139 * 103.01722 * 22.28447 * 13 12 11 15 15 O 1.42895 * 110.99568 * 82.47604 * 14 13 12 16 16 C 1.50701 * 110.99054 * 206.25445 * 14 13 12 17 17 H 1.08000 * 120.00122 * 116.90309 * 16 14 13 18 18 C 1.37883 * 120.00147 * 296.90879 * 16 14 13 19 19 N 1.31513 * 119.99472 * 5.05408 * 18 16 14 20 20 Si 1.86793 * 120.00253 * 185.06146 * 18 16 14 21 21 H 1.48502 * 109.47538 * 84.99258 * 20 18 16 22 22 H 1.48497 * 109.47207 * 204.99613 * 20 18 16 23 23 H 1.48506 * 109.46902 * 324.99409 * 20 18 16 24 24 C 1.47844 * 111.00226 * 180.71603 * 11 10 9 25 25 N 1.32082 * 118.91273 * 269.97702 * 3 2 1 26 26 H 1.08996 * 109.46927 * 59.99618 * 1 2 3 27 27 H 1.08993 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46796 * 300.00037 * 1 2 3 29 29 H 1.09007 * 109.46866 * 240.00675 * 2 1 3 30 30 H 1.09001 * 109.47370 * 120.00467 * 2 1 3 31 31 H 1.07995 * 124.29912 * 180.26613 * 7 6 5 32 32 H 1.08005 * 122.58731 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.88654 * 242.66375 * 12 11 10 34 34 H 1.08997 * 109.88870 * 3.85120 * 12 11 10 35 35 H 1.09006 * 110.70604 * 140.66229 * 13 12 11 36 36 H 1.08997 * 110.70726 * 263.72291 * 13 12 11 37 37 H 0.96703 * 114.00003 * 54.61517 * 15 14 13 38 38 H 0.97007 * 119.99490 * 180.02562 * 19 18 16 39 39 H 1.09006 * 110.37055 * 332.47518 * 24 11 10 40 40 H 1.09000 * 110.37126 * 94.80330 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2440 2.0191 1.1493 5 6 2.6905 3.2805 1.1991 6 16 3.0612 4.3264 2.5620 7 6 3.5291 5.6470 1.5075 8 6 3.4103 5.3135 0.2371 9 6 2.9330 3.9635 0.0041 10 6 2.6888 3.2700 -1.2089 11 7 2.9075 3.8871 -2.4274 12 6 4.3163 4.3002 -2.5652 13 6 4.8643 3.6361 -3.8458 14 6 3.5798 3.3447 -4.6655 15 8 3.1558 4.5055 -5.3828 16 6 3.7887 2.1819 -5.6011 17 1 3.2058 1.2807 -5.4810 18 6 4.7242 2.2684 -6.6103 19 7 5.5031 3.3247 -6.6960 20 14 4.8851 0.8857 -7.8558 21 1 3.8981 1.0852 -8.9473 22 1 6.2575 0.8877 -8.4231 23 1 4.6277 -0.4151 -7.1873 24 6 2.5706 2.9828 -3.5475 25 7 2.2456 2.0227 -1.1562 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8746 6.6096 1.8544 32 1 3.6504 5.9927 -0.5676 33 1 4.3776 5.3849 -2.6545 34 1 4.8875 3.9644 -1.6997 35 1 5.5187 4.3209 -4.3853 36 1 5.3898 2.7118 -3.6059 37 1 3.8384 4.8877 -5.9512 38 1 6.1610 3.3858 -7.4063 39 1 2.6949 1.9427 -3.2459 40 1 1.5497 3.1613 -3.8853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:14 Heat of formation + Delta-G solvation = 27.550944 kcal Electronic energy + Delta-G solvation = -24852.169017 eV Core-core repulsion = 21372.511950 eV Total energy + Delta-G solvation = -3479.657067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19057 -38.61608 -36.44057 -35.24912 -33.19733 -32.68044 -32.22922 -29.90235 -28.62224 -28.27610 -25.48333 -24.72556 -23.67214 -22.42967 -20.88328 -20.49655 -19.78676 -18.33025 -17.54409 -16.79746 -15.87045 -15.54203 -15.38936 -14.94736 -14.84119 -14.28856 -14.07259 -14.04705 -13.90805 -13.21203 -12.89534 -12.76309 -12.69283 -12.36757 -11.89604 -11.77387 -11.51128 -11.35716 -11.18021 -11.12141 -11.07134 -10.95033 -10.87272 -10.67425 -10.45559 -10.42892 -10.03530 -9.36248 -9.11339 -9.02422 -8.68746 -8.42758 -8.22879 -7.80910 -6.27712 -4.34330 0.52990 1.12435 1.15481 1.84257 2.21015 3.21050 3.27688 3.30716 3.62684 3.86517 4.07107 4.27241 4.57439 4.60375 4.88180 4.98078 5.08749 5.22547 5.29551 5.35454 5.44729 5.60554 5.70046 5.76153 5.84496 5.88128 5.96338 6.01539 6.08391 6.11959 6.21185 6.40237 6.42898 6.73263 6.82230 6.85194 7.21706 7.29050 7.34143 7.42854 7.74240 8.06214 8.29510 8.67608 9.30813 9.37894 10.79925 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.004200 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.604711 B = 6664.328076 C = 7936.142487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C 0.365 3.635 4 N -0.524 5.524 5 C 0.110 3.890 6 S 0.138 5.862 7 C -0.218 4.218 8 C -0.074 4.074 9 C -0.207 4.207 10 C 0.423 3.577 11 N -0.461 5.461 12 C 0.053 3.947 13 C -0.143 4.143 14 C 0.252 3.748 15 O -0.578 6.578 16 C -0.533 4.533 17 H 0.064 0.936 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.058 3.942 25 N -0.556 5.556 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.376 0.624 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 1.251 14.927 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C 0.093 3.907 4 N -0.244 5.244 5 C -0.141 4.141 6 S 0.395 5.605 7 C -0.352 4.352 8 C -0.104 4.104 9 C -0.223 4.223 10 C 0.173 3.827 11 N -0.175 5.175 12 C -0.072 4.072 13 C -0.182 4.182 14 C 0.212 3.788 15 O -0.385 6.385 16 C -0.571 4.571 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.067 4.067 25 N -0.278 5.278 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.952 0.668 16.657 17.132 hybrid contribution 1.420 0.038 -2.467 2.847 sum -2.532 0.705 14.190 14.432 Atomic orbital electron populations 1.21672 0.93524 1.02343 1.02477 1.20359 0.96760 0.87861 1.04272 1.22982 0.88924 0.96614 0.82216 1.67840 1.18687 1.07751 1.30079 1.23710 0.98654 0.95141 0.96584 1.84027 1.68497 1.02825 1.05200 1.25075 1.10250 1.03458 0.96415 1.20723 0.98725 0.93891 0.97095 1.20205 1.11437 0.96835 0.93861 1.20358 0.86213 0.85889 0.90196 1.60259 1.21582 1.35508 1.00196 1.23043 0.83117 1.01181 0.99847 1.23369 1.01005 1.00387 0.93472 1.19572 0.86756 0.84852 0.87658 1.86183 1.43890 1.45673 1.62766 1.21438 1.21060 1.00530 1.14106 0.91792 1.24970 0.94373 0.96178 0.97353 1.69758 1.21496 1.29058 1.33067 0.86471 0.77269 0.82107 0.81362 1.20285 1.21186 1.19782 1.23276 1.00866 0.95230 0.87320 1.68157 1.21214 1.08469 1.29958 0.92069 0.91479 0.92521 0.88764 0.89296 0.80898 0.83069 0.90151 0.93145 0.89356 0.91814 0.77524 0.92350 0.89061 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 37.16 0.37 -1.21 16 2 C -0.05 -0.67 6.36 -27.88 -0.18 -0.85 16 3 C 0.37 6.05 6.89 -157.38 -1.08 4.97 16 4 N -0.52 -8.76 10.36 -9.47 -0.10 -8.86 16 5 C 0.11 1.77 7.69 -16.08 -0.12 1.65 16 6 S 0.14 1.67 23.23 -107.50 -2.50 -0.82 16 7 C -0.22 -2.42 11.02 28.83 0.32 -2.10 16 8 C -0.07 -1.00 9.46 -38.78 -0.37 -1.37 16 9 C -0.21 -3.46 5.47 -105.24 -0.58 -4.03 16 10 C 0.42 7.94 6.19 -154.57 -0.96 6.98 16 11 N -0.46 -9.05 5.17 -169.29 -0.88 -9.93 16 12 C 0.05 0.98 5.49 -2.83 -0.02 0.96 16 13 C -0.14 -3.12 5.33 -24.91 -0.13 -3.25 16 14 C 0.25 6.02 0.86 -89.64 -0.08 5.94 16 15 O -0.58 -14.36 13.14 -35.23 -0.46 -14.82 16 16 C -0.53 -13.91 8.26 -34.44 -0.28 -14.19 16 17 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 18 C 0.07 1.90 5.32 -17.82 -0.09 1.81 16 19 N -0.89 -23.00 10.85 55.43 0.60 -22.40 16 20 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 C 0.06 1.28 5.55 -2.30 -0.01 1.26 16 25 N -0.56 -10.36 8.17 -9.59 -0.08 -10.44 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.15 1.90 7.29 -52.48 -0.38 1.51 16 33 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 34 H 0.05 0.88 7.03 -51.93 -0.37 0.51 16 35 H 0.09 1.99 7.47 -51.93 -0.39 1.60 16 36 H 0.06 1.45 8.04 -51.93 -0.42 1.04 16 37 H 0.38 9.25 7.71 45.56 0.35 9.60 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.09 2.03 6.48 -51.93 -0.34 1.70 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -28.23 340.49 -10.97 -39.20 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.45 Total: 11.13 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.22 Total: -3.45 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.45 Total: -51.63 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.46 Total: -14.82 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.50 Total: -0.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.23 -10.97 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.750 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds