Wall clock time and date at job start Tue Mar 31 2020 12:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47084 * 2 1 4 4 N 1.31290 * 118.90590 * 90.00490 * 3 2 1 5 5 C 1.33900 * 121.03596 * 179.97438 * 4 3 2 6 6 S 1.75750 * 131.28134 * 180.02562 * 5 4 3 7 7 C 1.75358 * 92.18606 * 179.97438 * 6 5 4 8 8 C 1.31884 * 111.38954 * 0.02562 * 7 6 5 9 9 C 1.39759 * 119.10750 * 359.97438 * 5 4 3 10 10 C 1.41844 * 117.54127 * 359.97438 * 9 5 4 11 11 N 1.38333 * 120.52767 * 179.97438 * 10 9 5 12 12 C 1.47448 * 110.99709 * 59.87837 * 11 10 9 13 13 C 1.54318 * 107.23357 * 123.25608 * 12 11 10 14 14 C 1.55139 * 103.01722 * 22.28447 * 13 12 11 15 15 O 1.42895 * 110.99568 * 82.47604 * 14 13 12 16 16 C 1.50701 * 110.99054 * 206.25445 * 14 13 12 17 17 H 1.08000 * 120.00122 * 116.90309 * 16 14 13 18 18 C 1.37883 * 120.00147 * 296.90879 * 16 14 13 19 19 N 1.31513 * 119.99472 * 5.05408 * 18 16 14 20 20 Si 1.86793 * 120.00253 * 185.06146 * 18 16 14 21 21 H 1.48502 * 109.47538 * 84.99258 * 20 18 16 22 22 H 1.48497 * 109.47207 * 204.99613 * 20 18 16 23 23 H 1.48506 * 109.46902 * 324.99409 * 20 18 16 24 24 C 1.47844 * 111.00226 * 180.71603 * 11 10 9 25 25 N 1.32082 * 118.91273 * 269.97702 * 3 2 1 26 26 H 1.08996 * 109.46927 * 59.99618 * 1 2 3 27 27 H 1.08993 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46796 * 300.00037 * 1 2 3 29 29 H 1.09007 * 109.46866 * 240.00675 * 2 1 3 30 30 H 1.09001 * 109.47370 * 120.00467 * 2 1 3 31 31 H 1.07995 * 124.29912 * 180.26613 * 7 6 5 32 32 H 1.08005 * 122.58731 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.88654 * 242.66375 * 12 11 10 34 34 H 1.08997 * 109.88870 * 3.85120 * 12 11 10 35 35 H 1.09006 * 110.70604 * 140.66229 * 13 12 11 36 36 H 1.08997 * 110.70726 * 263.72291 * 13 12 11 37 37 H 0.96703 * 114.00003 * 54.61517 * 15 14 13 38 38 H 0.97007 * 119.99490 * 180.02562 * 19 18 16 39 39 H 1.09006 * 110.37055 * 332.47518 * 24 11 10 40 40 H 1.09000 * 110.37126 * 94.80330 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2440 2.0191 1.1493 5 6 2.6905 3.2805 1.1991 6 16 3.0612 4.3264 2.5620 7 6 3.5291 5.6470 1.5075 8 6 3.4103 5.3135 0.2371 9 6 2.9330 3.9635 0.0041 10 6 2.6888 3.2700 -1.2089 11 7 2.9075 3.8871 -2.4274 12 6 4.3163 4.3002 -2.5652 13 6 4.8643 3.6361 -3.8458 14 6 3.5798 3.3447 -4.6655 15 8 3.1558 4.5055 -5.3828 16 6 3.7887 2.1819 -5.6011 17 1 3.2058 1.2807 -5.4810 18 6 4.7242 2.2684 -6.6103 19 7 5.5031 3.3247 -6.6960 20 14 4.8851 0.8857 -7.8558 21 1 3.8981 1.0852 -8.9473 22 1 6.2575 0.8877 -8.4231 23 1 4.6277 -0.4151 -7.1873 24 6 2.5706 2.9828 -3.5475 25 7 2.2456 2.0227 -1.1562 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8746 6.6096 1.8544 32 1 3.6504 5.9927 -0.5676 33 1 4.3776 5.3849 -2.6545 34 1 4.8875 3.9644 -1.6997 35 1 5.5187 4.3209 -4.3853 36 1 5.3898 2.7118 -3.6059 37 1 3.8384 4.8877 -5.9512 38 1 6.1610 3.3858 -7.4063 39 1 2.6949 1.9427 -3.2459 40 1 1.5497 3.1613 -3.8853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:14 Heat of formation + Delta-G solvation = 9.393734 kcal Electronic energy + Delta-G solvation = -24852.956373 eV Core-core repulsion = 21372.511950 eV Total energy + Delta-G solvation = -3480.444423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48040 -40.19429 -37.57575 -36.93208 -34.28378 -34.21991 -34.05177 -31.38097 -30.22694 -29.68217 -27.14290 -25.93908 -25.08183 -23.66936 -22.03612 -21.92231 -21.51239 -19.57105 -19.19568 -18.39594 -17.28261 -16.88743 -16.86465 -16.66854 -16.16277 -15.80463 -15.51747 -15.08486 -14.94019 -14.58631 -14.53165 -14.08052 -14.01109 -13.84894 -13.58183 -13.21368 -12.93535 -12.87790 -12.68310 -12.57088 -12.48267 -12.26237 -12.24390 -12.05886 -12.01974 -11.87963 -11.69963 -11.22031 -10.65566 -10.40295 -10.32440 -10.14286 -9.63339 -9.00925 -8.24154 -6.37536 -0.63012 -0.18423 0.09105 0.84626 1.16416 1.40486 1.43193 1.51025 2.27301 2.39388 2.59106 2.90066 3.01366 3.28091 3.46790 3.64302 3.81492 3.92640 4.05552 4.13171 4.25737 4.29057 4.33287 4.45217 4.54404 4.65719 4.73626 4.91897 4.93460 4.96318 5.03505 5.07828 5.10685 5.13458 5.27361 5.30507 5.40477 5.48383 5.75074 5.90683 5.93731 6.14544 6.65180 7.01709 7.32688 7.39299 8.81757 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.004200 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.604711 B = 6664.328076 C = 7936.142487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C 0.347 3.653 4 N -0.526 5.526 5 C 0.075 3.925 6 S 0.190 5.810 7 C -0.187 4.187 8 C -0.102 4.102 9 C -0.212 4.212 10 C 0.396 3.604 11 N -0.462 5.462 12 C 0.065 3.935 13 C -0.132 4.132 14 C 0.241 3.759 15 O -0.584 6.584 16 C -0.561 4.561 17 H 0.051 0.949 18 C 0.038 3.962 19 N -0.905 5.905 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.071 3.929 25 N -0.579 5.579 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.217 0.783 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.374 0.626 38 H 0.270 0.730 39 H 0.081 0.919 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 1.984 16.956 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C 0.075 3.925 4 N -0.246 5.246 5 C -0.175 4.175 6 S 0.447 5.553 7 C -0.321 4.321 8 C -0.132 4.132 9 C -0.229 4.229 10 C 0.148 3.852 11 N -0.178 5.178 12 C -0.060 4.060 13 C -0.172 4.172 14 C 0.201 3.799 15 O -0.392 6.392 16 C -0.599 4.599 17 H 0.070 0.930 18 C -0.164 4.164 19 N -0.544 5.544 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.198 1.198 24 C -0.055 4.055 25 N -0.301 5.301 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.234 0.766 32 H 0.178 0.822 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.222 0.778 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.528 1.400 18.722 19.103 hybrid contribution 1.295 -0.143 -2.935 3.211 sum -2.232 1.256 15.787 15.994 Atomic orbital electron populations 1.21629 0.92370 1.03805 1.01413 1.20502 0.97637 0.85973 1.05009 1.23614 0.89174 0.97896 0.81790 1.67928 1.18459 1.08264 1.29956 1.24385 0.99193 0.95451 0.98513 1.83923 1.66896 1.01431 1.03066 1.25636 1.06727 1.04454 0.95244 1.20797 1.00960 0.92865 0.98570 1.20466 1.11071 0.98274 0.93085 1.20511 0.87658 0.86609 0.90463 1.60307 1.22128 1.35376 0.99987 1.22953 0.82819 1.01889 0.98339 1.23115 0.99756 0.99526 0.94756 1.19678 0.88368 0.83996 0.87892 1.86171 1.44092 1.45958 1.62932 1.21673 1.21611 1.01043 1.15593 0.93030 1.25579 0.94010 0.98216 0.98568 1.69821 1.21409 1.29867 1.33302 0.85612 0.77370 0.79674 0.79208 1.20205 1.20396 1.19818 1.22946 0.99470 0.95263 0.87807 1.68116 1.21638 1.09008 1.31353 0.93876 0.88727 0.92725 0.88923 0.87524 0.76633 0.82170 0.88181 0.92027 0.90332 0.93653 0.77770 0.92108 0.90096 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.90 71.98 0.71 -2.21 16 2 C -0.05 -1.31 6.36 29.85 0.19 -1.12 16 3 C 0.35 11.62 6.89 138.81 0.96 12.58 16 4 N -0.53 -17.31 10.36 -183.87 -1.90 -19.22 16 5 C 0.07 2.31 7.69 84.75 0.65 2.96 16 6 S 0.19 3.99 23.23 -56.49 -1.31 2.68 16 7 C -0.19 -3.36 11.02 66.99 0.74 -2.62 16 8 C -0.10 -2.52 9.46 23.19 0.22 -2.30 16 9 C -0.21 -6.90 5.47 -20.27 -0.11 -7.01 16 10 C 0.40 15.07 6.19 133.95 0.83 15.90 16 11 N -0.46 -18.47 5.17 -689.51 -3.56 -22.03 16 12 C 0.06 2.38 5.49 86.65 0.48 2.86 16 13 C -0.13 -5.89 5.33 31.77 0.17 -5.72 16 14 C 0.24 11.86 0.86 -10.16 -0.01 11.85 16 15 O -0.58 -29.73 13.14 -148.98 -1.96 -31.69 16 16 C -0.56 -30.18 8.26 25.60 0.21 -29.97 16 17 H 0.05 2.82 7.79 -2.91 -0.02 2.79 16 18 C 0.04 1.97 5.32 84.66 0.45 2.42 16 19 N -0.91 -46.94 10.85 21.45 0.23 -46.70 16 20 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.07 3.25 5.55 86.77 0.48 3.74 16 25 N -0.58 -22.21 8.17 -184.27 -1.51 -23.71 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.22 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.16 3.61 7.29 -2.91 -0.02 3.59 16 33 H 0.10 3.29 7.88 -2.38 -0.02 3.27 16 34 H 0.06 2.12 7.03 -2.39 -0.02 2.10 16 35 H 0.08 3.60 7.47 -2.38 -0.02 3.59 16 36 H 0.04 2.13 8.04 -2.39 -0.02 2.11 16 37 H 0.37 18.83 7.71 -74.06 -0.57 18.26 16 38 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 39 H 0.08 3.81 6.48 -2.38 -0.02 3.80 16 40 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.23 340.49 -1.51 -63.74 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.51 Total: 31.65 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.97 Total: 1.35 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -6.74 Total: -111.67 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.96 Total: -31.69 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -62.23 -1.51 -63.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.138 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds