Wall clock time and date at job start Tue Mar 31 2020 12:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46839 * 2 1 4 4 N 1.31287 * 118.91157 * 89.99934 * 3 2 1 5 5 C 1.33895 * 121.03633 * 179.97438 * 4 3 2 6 6 S 1.75751 * 131.27770 * 179.97438 * 5 4 3 7 7 C 1.75358 * 92.18688 * 180.02562 * 6 5 4 8 8 C 1.31892 * 111.39062 * 359.97438 * 7 6 5 9 9 C 1.39753 * 119.10780 * 0.02562 * 5 4 3 10 10 C 1.41840 * 117.54428 * 359.97438 * 9 5 4 11 11 N 1.38325 * 120.53018 * 180.02562 * 10 9 5 12 12 C 1.48533 * 110.99966 * 297.39727 * 11 10 9 13 13 C 1.55103 * 103.28515 * 200.33193 * 12 11 10 14 14 C 1.54595 * 102.84457 * 37.30647 * 13 12 11 15 15 O 1.42905 * 110.30952 * 219.18552 * 14 13 12 16 16 C 1.50704 * 110.31013 * 97.11641 * 14 13 12 17 17 H 1.08003 * 119.99531 * 242.78485 * 16 14 13 18 18 C 1.37871 * 120.00099 * 62.79257 * 16 14 13 19 19 N 1.31523 * 119.99832 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00214 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46960 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47199 * 119.99578 * 20 18 16 23 23 H 1.48499 * 109.47652 * 239.99840 * 20 18 16 24 24 C 1.47906 * 111.00327 * 180.02562 * 11 10 9 25 25 N 1.32087 * 118.90660 * 270.24984 * 3 2 1 26 26 H 1.09005 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47279 * 300.00237 * 1 2 3 28 28 H 1.08998 * 109.47588 * 60.00805 * 1 2 3 29 29 H 1.08997 * 109.47279 * 239.99762 * 2 1 3 30 30 H 1.09004 * 109.46848 * 119.99651 * 2 1 3 31 31 H 1.07996 * 124.30971 * 180.02562 * 7 6 5 32 32 H 1.08002 * 122.59613 * 179.97438 * 8 7 6 33 33 H 1.09003 * 110.66452 * 318.71498 * 12 11 10 34 34 H 1.09001 * 110.67045 * 81.67575 * 12 11 10 35 35 H 1.09003 * 110.71219 * 278.99450 * 13 12 11 36 36 H 1.08998 * 110.81026 * 155.65894 * 13 12 11 37 37 H 0.96697 * 113.99904 * 297.21134 * 15 14 13 38 38 H 0.96998 * 119.99549 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.91186 * 26.48791 * 24 11 10 40 40 H 1.09005 * 109.91324 * 265.19693 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2438 2.0193 1.1492 5 6 2.6902 3.2807 1.1989 6 16 3.0596 4.3270 2.5618 7 6 3.5270 5.6479 1.5073 8 6 3.4100 5.3136 0.2368 9 6 2.9317 3.9639 0.0039 10 6 2.6867 3.2706 -1.2091 11 7 2.9054 3.8877 -2.4276 12 6 2.0164 5.0658 -2.5948 13 6 2.0037 5.2877 -4.1298 14 6 2.0141 3.8451 -4.6857 15 8 2.8538 3.7641 -5.8391 16 6 0.6135 3.4061 -5.0275 17 1 0.1671 2.5716 -4.5071 18 6 -0.0978 4.0697 -6.0045 19 7 0.4457 5.0862 -6.6378 20 14 -1.8336 3.5252 -6.4287 21 1 -2.2103 2.3667 -5.5794 22 1 -2.7773 4.6456 -6.1853 23 1 -1.8929 3.1299 -7.8589 24 6 2.5829 2.9776 -3.5481 25 7 2.2403 2.0245 -1.1563 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8682 6.6121 1.8540 32 1 3.6501 5.9927 -0.5680 33 1 1.0129 4.8452 -2.2309 34 1 2.4282 5.9345 -2.0811 35 1 2.8938 5.8302 -4.4483 36 1 1.0996 5.8131 -4.4377 37 1 2.5560 4.3076 -6.5814 38 1 -0.0546 5.5528 -7.3255 39 1 1.8391 2.2470 -3.2306 40 1 3.4863 2.4694 -3.8853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:16 Heat of formation + Delta-G solvation = 28.701364 kcal Electronic energy + Delta-G solvation = -24959.418496 eV Core-core repulsion = 21479.811315 eV Total energy + Delta-G solvation = -3479.607181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17170 -38.57438 -36.44579 -35.33903 -33.19639 -32.75031 -32.21164 -29.91155 -28.53406 -28.09678 -25.44694 -24.73881 -23.69441 -22.40159 -20.88141 -20.70030 -19.65846 -18.44615 -17.24447 -17.10858 -15.83597 -15.56387 -15.41357 -15.04977 -14.66000 -14.30842 -14.08155 -13.90311 -13.65356 -13.44758 -13.02055 -12.73187 -12.58186 -12.43597 -11.77581 -11.62796 -11.53176 -11.37961 -11.19297 -11.13541 -11.04236 -10.88002 -10.77456 -10.65671 -10.50922 -10.46686 -10.12644 -9.31680 -9.12018 -9.01951 -8.68660 -8.43588 -8.21732 -7.85766 -6.29792 -4.39086 0.51934 1.11082 1.14770 1.83405 2.20239 3.16204 3.25724 3.30272 3.62218 3.89360 4.06008 4.24508 4.57454 4.57624 4.87611 4.98052 5.07472 5.27022 5.31364 5.38407 5.44188 5.61495 5.70893 5.82084 5.86849 5.87403 6.01424 6.03135 6.11058 6.13236 6.27116 6.43438 6.47794 6.71174 6.85655 6.92897 7.21149 7.24097 7.40534 7.42875 7.71763 8.07159 8.28691 8.65333 9.30064 9.44941 10.76257 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004517 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.911056 B = 6196.816318 C = 7234.581554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C 0.364 3.636 4 N -0.521 5.521 5 C 0.108 3.892 6 S 0.139 5.861 7 C -0.217 4.217 8 C -0.076 4.076 9 C -0.203 4.203 10 C 0.421 3.579 11 N -0.457 5.457 12 C 0.053 3.947 13 C -0.130 4.130 14 C 0.247 3.753 15 O -0.587 6.587 16 C -0.532 4.532 17 H 0.063 0.937 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.281 1.281 24 C 0.051 3.949 25 N -0.552 5.552 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.383 0.617 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -0.434 14.468 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C 0.091 3.909 4 N -0.241 5.241 5 C -0.142 4.142 6 S 0.396 5.604 7 C -0.350 4.350 8 C -0.106 4.106 9 C -0.219 4.219 10 C 0.172 3.828 11 N -0.174 5.174 12 C -0.071 4.071 13 C -0.169 4.169 14 C 0.206 3.794 15 O -0.396 6.396 16 C -0.570 4.570 17 H 0.081 0.919 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.075 4.075 25 N -0.274 5.274 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.583 -1.548 16.235 16.697 hybrid contribution -1.433 1.075 -2.105 2.764 sum 2.151 -0.473 14.129 14.300 Atomic orbital electron populations 1.21688 0.93446 1.02399 1.02666 1.20355 0.96891 0.87760 1.04138 1.23012 0.89158 0.96469 0.82229 1.67838 1.18539 1.07617 1.30114 1.23712 0.98816 0.95084 0.96610 1.84034 1.68487 1.02749 1.05150 1.25094 1.10039 1.03476 0.96425 1.20751 0.98910 0.93875 0.97092 1.20198 1.10961 0.96955 0.93823 1.20327 0.83771 0.88286 0.90417 1.61471 1.46763 1.09239 0.99894 1.23378 0.93450 0.89893 1.00412 1.23181 1.02380 1.01150 0.90144 1.19359 0.88274 0.88872 0.82875 1.86123 1.54427 1.72599 1.26487 1.21769 0.98582 1.16100 1.20594 0.91892 1.25004 0.98625 0.94211 0.95381 1.69656 1.38133 1.20799 1.24975 0.86418 0.83699 0.78763 0.78478 1.19614 1.20865 1.20677 1.23014 1.01504 0.94686 0.88253 1.68209 1.18248 1.11003 1.29914 0.91483 0.92494 0.91870 0.88846 0.89313 0.80862 0.82975 0.92678 0.90553 0.92583 0.88876 0.76603 0.92205 0.89268 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 37.16 0.37 -1.35 16 2 C -0.05 -0.67 6.36 -27.88 -0.18 -0.85 16 3 C 0.36 6.11 6.89 -157.37 -1.08 5.02 16 4 N -0.52 -8.79 10.36 -9.47 -0.10 -8.89 16 5 C 0.11 1.76 7.69 -16.09 -0.12 1.63 16 6 S 0.14 1.69 23.23 -107.50 -2.50 -0.81 16 7 C -0.22 -2.38 11.02 28.83 0.32 -2.07 16 8 C -0.08 -1.03 9.50 -38.78 -0.37 -1.39 16 9 C -0.20 -3.40 5.79 -105.24 -0.61 -4.01 16 10 C 0.42 7.98 6.26 -154.57 -0.97 7.01 16 11 N -0.46 -9.04 5.26 -168.45 -0.89 -9.92 16 12 C 0.05 1.01 5.86 -1.81 -0.01 1.00 16 13 C -0.13 -2.84 5.89 -24.78 -0.15 -2.99 16 14 C 0.25 5.96 0.99 -90.43 -0.09 5.87 16 15 O -0.59 -15.04 12.93 -35.23 -0.46 -15.50 16 16 C -0.53 -13.83 8.23 -34.44 -0.28 -14.12 16 17 H 0.06 1.67 7.34 -52.48 -0.39 1.28 16 18 C 0.07 1.78 5.01 -17.82 -0.09 1.69 16 19 N -0.90 -22.93 10.38 55.43 0.58 -22.36 16 20 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.05 1.14 5.84 -2.77 -0.02 1.12 16 25 N -0.55 -10.45 8.14 -9.60 -0.08 -10.52 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.15 1.88 6.68 -52.49 -0.35 1.53 16 33 H 0.05 1.09 7.99 -51.93 -0.42 0.68 16 34 H 0.08 1.22 6.25 -51.93 -0.32 0.89 16 35 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.09 2.20 6.64 -51.93 -0.34 1.86 16 37 H 0.38 9.86 7.19 45.56 0.33 10.19 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.09 2.04 5.77 -51.93 -0.30 1.75 16 40 H 0.08 1.73 7.96 -51.93 -0.41 1.31 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -28.16 337.39 -10.96 -39.12 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.30 Total: 12.07 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.28 Total: -3.44 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.49 Total: -51.69 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.46 Total: -15.50 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.50 Total: -0.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.16 -10.96 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.819 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds