Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31895 * 122.59639 * 2 1 4 4 S 1.75354 * 111.38601 * 179.97438 * 3 2 1 5 5 C 1.75749 * 92.18674 * 0.02562 * 4 3 2 6 6 N 1.33925 * 131.28124 * 180.02562 * 5 4 3 7 7 C 1.31258 * 121.04302 * 179.97438 * 6 5 4 8 8 C 1.50702 * 118.90976 * 180.02562 * 7 6 5 9 9 N 1.32116 * 122.18589 * 359.76027 * 7 6 5 10 10 C 1.32457 * 121.17812 * 0.51417 * 9 7 6 11 11 N 1.38321 * 120.52560 * 179.75036 * 10 9 7 12 12 C 1.48720 * 111.01940 * 302.73474 * 11 10 9 13 13 C 1.54373 * 104.52086 * 158.96549 * 12 11 10 14 14 C 1.54260 * 105.15103 * 336.26986 * 13 12 11 15 15 O 1.42894 * 110.32477 * 118.84392 * 14 13 12 16 16 C 1.50700 * 110.32551 * 240.94862 * 14 13 12 17 17 H 1.08005 * 119.99647 * 118.54214 * 16 14 13 18 18 C 1.37874 * 120.00022 * 298.54889 * 16 14 13 19 19 N 1.31510 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99999 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47287 * 89.99676 * 20 18 16 22 22 H 1.48503 * 109.47246 * 209.99912 * 20 18 16 23 23 H 1.48506 * 109.46890 * 329.99594 * 20 18 16 24 24 C 1.48563 * 111.00243 * 58.24177 * 11 10 9 25 25 C 1.39720 * 109.61453 * 359.97438 * 5 4 3 26 26 H 1.08998 * 109.47074 * 264.58645 * 1 2 3 27 27 H 1.08999 * 109.46908 * 24.58925 * 1 2 3 28 28 H 1.09005 * 109.46902 * 144.58323 * 1 2 3 29 29 H 1.07997 * 124.30527 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47068 * 90.00196 * 8 7 6 31 31 H 1.08999 * 109.47158 * 210.00072 * 8 7 6 32 32 H 1.08998 * 109.47253 * 330.00477 * 8 7 6 33 33 H 1.09007 * 110.38987 * 40.23938 * 12 11 10 34 34 H 1.09004 * 110.50735 * 277.75449 * 12 11 10 35 35 H 1.09005 * 110.32535 * 217.31884 * 13 12 11 36 36 H 1.09006 * 110.32597 * 95.21858 * 13 12 11 37 37 H 0.96698 * 114.00135 * 61.45349 * 15 14 13 38 38 H 0.97001 * 120.00011 * 180.02562 * 19 18 16 39 39 H 1.09006 * 110.40623 * 82.17753 * 24 11 10 40 40 H 1.08999 * 110.40767 * 319.74205 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1112 0.0000 4 16 3.9376 0.7703 0.0007 5 6 3.6620 -0.9655 0.0003 6 7 4.5173 -1.9959 0.0009 7 6 4.0843 -3.2350 0.0009 8 6 5.0894 -4.3580 0.0022 9 7 2.7967 -3.5305 0.0049 10 6 1.8748 -2.5794 -0.0010 11 7 0.5303 -2.9041 -0.0019 12 6 0.1900 -3.7643 -1.1664 13 6 -1.1230 -4.4663 -0.7586 14 6 -1.1291 -4.4454 0.7839 15 8 -2.2572 -3.7127 1.2659 16 6 -1.1486 -5.8512 1.3263 17 1 -0.3337 -6.2042 1.9411 18 6 -2.2066 -6.6869 1.0378 19 7 -3.1990 -6.2569 0.2896 20 14 -2.2305 -8.4297 1.7096 21 1 -2.9047 -8.4411 3.0326 22 1 -2.9682 -9.3123 0.7704 23 1 -0.8372 -8.9214 1.8598 24 6 0.1820 -3.7334 1.1805 25 6 2.2886 -1.2222 0.0002 26 1 -0.3633 -0.0970 1.0231 27 1 -0.3633 0.9345 -0.4276 28 1 -0.3633 -0.8376 -0.5956 29 1 1.7938 2.1046 -0.0004 30 1 5.3306 -4.6284 1.0302 31 1 4.6690 -5.2224 -0.5118 32 1 5.9954 -4.0354 -0.5108 33 1 0.9765 -4.4993 -1.3384 34 1 0.0352 -3.1565 -2.0579 35 1 -1.1323 -5.4934 -1.1234 36 1 -1.9816 -3.9192 -1.1480 37 1 -3.1099 -4.0891 1.0083 38 1 -3.9436 -6.8447 0.0869 39 1 0.0222 -3.1015 2.0542 40 1 0.9669 -4.4638 1.3770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = 29.634694 kcal Electronic energy + Delta-G solvation = -25060.650147 eV Core-core repulsion = 21581.083439 eV Total energy + Delta-G solvation = -3479.566709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20817 -38.46590 -36.88723 -35.28410 -32.80254 -32.16883 -31.92594 -29.29925 -28.43732 -28.10838 -27.28659 -24.98647 -23.83165 -22.59877 -20.80415 -19.78330 -19.57261 -18.48139 -17.48097 -16.95669 -15.91628 -15.42983 -15.12785 -15.03108 -14.62408 -14.06390 -13.89366 -13.58833 -13.56303 -13.21697 -12.78727 -12.58852 -12.47036 -12.37717 -12.17638 -11.96642 -11.86230 -11.35208 -11.27836 -11.14226 -10.96672 -10.94975 -10.71118 -10.64329 -10.46715 -10.31178 -9.93489 -9.30791 -9.20168 -8.85086 -8.63743 -8.38026 -8.12574 -7.98450 -6.25370 -4.33622 0.44857 0.93222 1.12155 1.84374 2.18158 3.20821 3.28177 3.31599 3.64816 3.80811 4.02781 4.28130 4.47152 4.59118 4.80152 5.02666 5.15251 5.39563 5.49755 5.52709 5.59899 5.63843 5.78348 5.80541 5.87855 5.95700 6.02430 6.13423 6.18166 6.22489 6.37877 6.44596 6.67435 6.70041 6.88397 6.97475 7.10601 7.36926 7.45459 7.53355 7.75206 8.11245 8.12571 8.69055 9.34832 9.48496 10.81497 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.004170 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.306778 B = 6713.453667 C = 7784.447877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.034 4.034 3 C -0.226 4.226 4 S 0.138 5.862 5 C 0.098 3.902 6 N -0.506 5.506 7 C 0.345 3.655 8 C -0.082 4.082 9 N -0.547 5.547 10 C 0.414 3.586 11 N -0.468 5.468 12 C 0.039 3.961 13 C -0.117 4.117 14 C 0.259 3.741 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.060 3.940 25 C -0.166 4.166 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.174 0.826 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.381 0.619 38 H 0.267 0.733 39 H 0.074 0.926 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 10.562 -2.971 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.045 4.045 3 C -0.360 4.360 4 S 0.396 5.604 5 C -0.154 4.154 6 N -0.224 5.224 7 C 0.073 3.927 8 C -0.141 4.141 9 N -0.266 5.266 10 C 0.168 3.832 11 N -0.192 5.192 12 C -0.087 4.087 13 C -0.156 4.156 14 C 0.218 3.782 15 O -0.394 6.394 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.065 4.065 25 C -0.181 4.181 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.191 0.809 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.231 0.769 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.516 11.632 -2.800 17.314 hybrid contribution -1.801 -2.201 0.090 2.845 sum 10.715 9.431 -2.711 14.529 Atomic orbital electron populations 1.20651 0.87871 1.03108 1.03893 1.19541 0.98012 0.89195 0.97802 1.24954 0.95772 1.02469 1.12759 1.84006 1.05020 0.93129 1.78239 1.23835 0.91762 0.99794 0.99984 1.67864 1.37953 0.98633 1.17966 1.23060 0.89627 0.90557 0.89501 1.20575 0.95661 0.93832 1.04012 1.68418 1.02547 1.38065 1.17552 1.20585 0.90939 0.87182 0.84450 1.63629 1.07854 1.41368 1.06327 1.23320 0.99735 0.94220 0.91440 1.22886 0.93245 0.99834 0.99642 1.19157 0.82109 0.88466 0.88442 1.86126 1.17736 1.56123 1.79430 1.21654 1.06511 0.96777 1.32503 0.92088 1.24966 0.95169 0.98842 0.94094 1.69691 1.09488 1.37101 1.37110 0.86477 0.78306 0.83678 0.78886 1.20449 1.21067 1.19778 1.23258 0.98438 0.94259 0.90574 1.20302 0.93316 0.94959 1.09527 0.90442 0.92140 0.88730 0.80862 0.89485 0.89278 0.89718 0.92591 0.91434 0.90442 0.92289 0.76899 0.92255 0.90723 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.59 36.00 0.35 -0.97 16 2 C -0.03 -0.48 5.96 -103.82 -0.62 -1.10 16 3 C -0.23 -2.67 10.75 28.83 0.31 -2.36 16 4 S 0.14 1.70 23.23 -107.50 -2.50 -0.80 16 5 C 0.10 1.57 7.69 -16.09 -0.12 1.45 16 6 N -0.51 -8.33 10.36 -9.47 -0.10 -8.43 16 7 C 0.34 5.58 7.64 -157.37 -1.20 4.37 16 8 C -0.08 -0.96 10.31 36.01 0.37 -0.59 16 9 N -0.55 -9.99 8.79 -9.59 -0.08 -10.08 16 10 C 0.41 7.68 5.58 -154.57 -0.86 6.82 16 11 N -0.47 -9.03 3.28 -167.94 -0.55 -9.58 16 12 C 0.04 0.75 6.42 -2.10 -0.01 0.74 16 13 C -0.12 -2.60 5.54 -25.35 -0.14 -2.74 16 14 C 0.26 6.20 1.05 -90.39 -0.10 6.10 16 15 O -0.59 -14.68 12.94 -35.23 -0.46 -15.13 16 16 C -0.54 -13.99 8.08 -34.44 -0.28 -14.27 16 17 H 0.06 1.61 7.59 -52.48 -0.40 1.21 16 18 C 0.07 1.84 5.02 -17.82 -0.09 1.75 16 19 N -0.89 -23.07 10.81 55.43 0.60 -22.47 16 20 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.06 1.31 5.68 -2.18 -0.01 1.29 16 25 C -0.17 -2.81 6.06 -105.24 -0.64 -3.44 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.09 1.48 6.69 -51.93 -0.35 1.13 16 29 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.11 7.41 -51.92 -0.38 0.72 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.86 7.24 -51.93 -0.38 1.48 16 36 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 37 H 0.38 9.67 7.32 45.56 0.33 10.00 16 38 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 39 H 0.07 1.64 8.08 -51.93 -0.42 1.22 16 40 H 0.07 1.49 7.00 -51.93 -0.36 1.12 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -27.87 340.12 -10.49 -38.36 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.46 Total: 10.71 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.05 Total: -2.94 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.13 Total: -50.57 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.46 Total: -15.13 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.50 Total: -0.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.87 -10.49 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.999 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds