Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31895 * 122.59639 * 2 1 4 4 S 1.75354 * 111.38601 * 179.97438 * 3 2 1 5 5 C 1.75749 * 92.18674 * 0.02562 * 4 3 2 6 6 N 1.33925 * 131.28124 * 180.02562 * 5 4 3 7 7 C 1.31258 * 121.04302 * 179.97438 * 6 5 4 8 8 C 1.50702 * 118.90976 * 180.02562 * 7 6 5 9 9 N 1.32116 * 122.18589 * 359.76027 * 7 6 5 10 10 C 1.32457 * 121.17812 * 0.51417 * 9 7 6 11 11 N 1.38321 * 120.52560 * 179.75036 * 10 9 7 12 12 C 1.48720 * 111.01940 * 302.73474 * 11 10 9 13 13 C 1.54373 * 104.52086 * 158.96549 * 12 11 10 14 14 C 1.54260 * 105.15103 * 336.26986 * 13 12 11 15 15 O 1.42894 * 110.32477 * 118.84392 * 14 13 12 16 16 C 1.50700 * 110.32551 * 240.94862 * 14 13 12 17 17 H 1.08005 * 119.99647 * 118.54214 * 16 14 13 18 18 C 1.37874 * 120.00022 * 298.54889 * 16 14 13 19 19 N 1.31510 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99999 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47287 * 89.99676 * 20 18 16 22 22 H 1.48503 * 109.47246 * 209.99912 * 20 18 16 23 23 H 1.48506 * 109.46890 * 329.99594 * 20 18 16 24 24 C 1.48563 * 111.00243 * 58.24177 * 11 10 9 25 25 C 1.39720 * 109.61453 * 359.97438 * 5 4 3 26 26 H 1.08998 * 109.47074 * 264.58645 * 1 2 3 27 27 H 1.08999 * 109.46908 * 24.58925 * 1 2 3 28 28 H 1.09005 * 109.46902 * 144.58323 * 1 2 3 29 29 H 1.07997 * 124.30527 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47068 * 90.00196 * 8 7 6 31 31 H 1.08999 * 109.47158 * 210.00072 * 8 7 6 32 32 H 1.08998 * 109.47253 * 330.00477 * 8 7 6 33 33 H 1.09007 * 110.38987 * 40.23938 * 12 11 10 34 34 H 1.09004 * 110.50735 * 277.75449 * 12 11 10 35 35 H 1.09005 * 110.32535 * 217.31884 * 13 12 11 36 36 H 1.09006 * 110.32597 * 95.21858 * 13 12 11 37 37 H 0.96698 * 114.00135 * 61.45349 * 15 14 13 38 38 H 0.97001 * 120.00011 * 180.02562 * 19 18 16 39 39 H 1.09006 * 110.40623 * 82.17753 * 24 11 10 40 40 H 1.08999 * 110.40767 * 319.74205 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1112 0.0000 4 16 3.9376 0.7703 0.0007 5 6 3.6620 -0.9655 0.0003 6 7 4.5173 -1.9959 0.0009 7 6 4.0843 -3.2350 0.0009 8 6 5.0894 -4.3580 0.0022 9 7 2.7967 -3.5305 0.0049 10 6 1.8748 -2.5794 -0.0010 11 7 0.5303 -2.9041 -0.0019 12 6 0.1900 -3.7643 -1.1664 13 6 -1.1230 -4.4663 -0.7586 14 6 -1.1291 -4.4454 0.7839 15 8 -2.2572 -3.7127 1.2659 16 6 -1.1486 -5.8512 1.3263 17 1 -0.3337 -6.2042 1.9411 18 6 -2.2066 -6.6869 1.0378 19 7 -3.1990 -6.2569 0.2896 20 14 -2.2305 -8.4297 1.7096 21 1 -2.9047 -8.4411 3.0326 22 1 -2.9682 -9.3123 0.7704 23 1 -0.8372 -8.9214 1.8598 24 6 0.1820 -3.7334 1.1805 25 6 2.2886 -1.2222 0.0002 26 1 -0.3633 -0.0970 1.0231 27 1 -0.3633 0.9345 -0.4276 28 1 -0.3633 -0.8376 -0.5956 29 1 1.7938 2.1046 -0.0004 30 1 5.3306 -4.6284 1.0302 31 1 4.6690 -5.2224 -0.5118 32 1 5.9954 -4.0354 -0.5108 33 1 0.9765 -4.4993 -1.3384 34 1 0.0352 -3.1565 -2.0579 35 1 -1.1323 -5.4934 -1.1234 36 1 -1.9816 -3.9192 -1.1480 37 1 -3.1099 -4.0891 1.0083 38 1 -3.9436 -6.8447 0.0869 39 1 0.0222 -3.1015 2.0542 40 1 0.9669 -4.4638 1.3770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = 12.880883 kcal Electronic energy + Delta-G solvation = -25061.376647 eV Core-core repulsion = 21581.083439 eV Total energy + Delta-G solvation = -3480.293209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.47442 -40.09866 -37.98780 -37.02358 -34.20210 -34.17634 -33.11644 -30.86546 -29.90238 -29.48773 -28.45511 -26.77832 -25.17087 -23.90133 -22.36468 -21.43916 -20.86828 -19.66701 -19.14633 -18.58848 -17.17197 -16.99927 -16.70539 -16.46005 -16.23856 -15.58512 -15.21633 -14.96942 -14.65846 -14.57430 -14.41658 -14.01418 -13.72142 -13.55384 -13.48289 -13.30670 -13.27422 -13.07279 -12.96611 -12.59099 -12.47028 -12.37992 -12.25334 -12.18179 -11.98709 -11.88466 -11.56262 -11.15089 -10.63001 -10.50868 -10.18039 -9.98704 -9.84110 -9.02581 -8.22790 -6.38181 -0.73021 -0.36263 0.04548 0.81258 1.09874 1.40374 1.43065 1.51794 2.34465 2.40201 2.47154 2.89832 3.02897 3.19293 3.46279 3.58731 3.84872 4.03432 4.06201 4.16296 4.40605 4.42271 4.55206 4.59908 4.64035 4.65763 4.70727 4.77517 4.89966 4.91464 4.97083 5.11105 5.19072 5.22466 5.32157 5.47325 5.56401 5.58881 5.69856 5.76816 6.02206 6.17465 6.66151 6.87364 7.33090 7.47038 8.82673 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.004170 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.306778 B = 6713.453667 C = 7784.447877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.065 4.065 3 C -0.198 4.198 4 S 0.196 5.804 5 C 0.067 3.933 6 N -0.509 5.509 7 C 0.329 3.671 8 C -0.078 4.078 9 N -0.568 5.568 10 C 0.387 3.613 11 N -0.456 5.456 12 C 0.049 3.951 13 C -0.104 4.104 14 C 0.248 3.752 15 O -0.591 6.591 16 C -0.562 4.562 17 H 0.049 0.951 18 C 0.036 3.964 19 N -0.906 5.906 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.274 1.274 24 C 0.072 3.928 25 C -0.177 4.177 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.215 0.785 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 12.298 -3.301 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.331 4.331 4 S 0.455 5.545 5 C -0.184 4.184 6 N -0.227 5.227 7 C 0.057 3.943 8 C -0.136 4.136 9 N -0.287 5.287 10 C 0.141 3.859 11 N -0.179 5.179 12 C -0.077 4.077 13 C -0.143 4.143 14 C 0.208 3.792 15 O -0.400 6.400 16 C -0.600 4.600 17 H 0.067 0.933 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.203 1.203 23 H -0.199 1.199 24 C -0.054 4.054 25 C -0.192 4.192 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.732 13.380 -3.136 19.428 hybrid contribution -2.095 -2.595 0.196 3.341 sum 11.637 10.786 -2.941 16.137 Atomic orbital electron populations 1.20551 0.87677 1.03692 1.02873 1.19593 0.98343 0.89013 1.00722 1.25481 0.95574 1.03426 1.08650 1.83873 1.04734 0.89396 1.76488 1.24469 0.91751 1.01858 1.00324 1.67972 1.38001 0.98889 1.17825 1.23782 0.89556 0.91702 0.89272 1.20697 0.95296 0.92570 1.05055 1.68374 1.03567 1.38609 1.18183 1.20629 0.90335 0.88319 0.86581 1.63559 1.09323 1.40060 1.04976 1.23187 0.97868 0.94345 0.92348 1.22625 0.94591 0.98727 0.98394 1.19296 0.82459 0.87981 0.89450 1.86117 1.17836 1.56265 1.79754 1.21857 1.06728 0.98236 1.33219 0.93295 1.25575 0.94796 1.01920 0.94200 1.69756 1.09599 1.38059 1.37154 0.85599 0.78109 0.79830 0.78338 1.20242 1.20294 1.19888 1.22959 0.97017 0.93962 0.91495 1.20551 0.94331 0.95018 1.09284 0.91726 0.89014 0.91270 0.76869 0.88290 0.89065 0.87757 0.93227 0.89329 0.92662 0.92808 0.77405 0.91977 0.91559 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 9.59 71.24 0.68 -1.63 16 2 C -0.07 -1.75 5.96 -18.95 -0.11 -1.86 16 3 C -0.20 -3.91 10.75 66.98 0.72 -3.19 16 4 S 0.20 4.19 23.23 -56.49 -1.31 2.88 16 5 C 0.07 2.07 7.69 84.73 0.65 2.72 16 6 N -0.51 -16.27 10.36 -183.88 -1.90 -18.18 16 7 C 0.33 10.56 7.64 138.81 1.06 11.62 16 8 C -0.08 -1.76 10.31 71.24 0.73 -1.03 16 9 N -0.57 -21.12 8.79 -184.25 -1.62 -22.75 16 10 C 0.39 14.55 5.58 133.96 0.75 15.30 16 11 N -0.46 -18.04 3.28 -685.25 -2.25 -20.29 16 12 C 0.05 1.93 6.42 86.42 0.56 2.48 16 13 C -0.10 -4.78 5.54 31.49 0.17 -4.61 16 14 C 0.25 12.30 1.05 -10.65 -0.01 12.29 16 15 O -0.59 -30.54 12.94 -148.98 -1.93 -32.47 16 16 C -0.56 -30.22 8.08 25.60 0.21 -30.02 16 17 H 0.05 2.68 7.59 -2.91 -0.02 2.65 16 18 C 0.04 1.89 5.02 84.65 0.43 2.31 16 19 N -0.91 -47.37 10.81 21.45 0.23 -47.13 16 20 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C 0.07 3.26 5.68 86.45 0.49 3.75 16 25 C -0.18 -5.86 6.06 -20.26 -0.12 -5.98 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 28 H 0.07 2.15 6.69 -2.38 -0.02 2.14 16 29 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 2.02 7.41 -2.38 -0.02 2.00 16 34 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.05 2.74 7.24 -2.38 -0.02 2.72 16 36 H 0.05 2.47 7.98 -2.38 -0.02 2.45 16 37 H 0.38 19.69 7.32 -74.06 -0.54 19.15 16 38 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 39 H 0.07 3.05 8.08 -2.38 -0.02 3.03 16 40 H 0.05 2.51 7.00 -2.39 -0.02 2.49 16 Total: -1.00 -61.29 340.12 -0.01 -61.30 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.54 Total: 30.55 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.20 Total: 2.17 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.54 Total: -108.34 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.93 Total: -32.47 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.31 Total: 2.88 kcal Total: -61.29 -0.01 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.182 kcal (2) G-P(sol) polarization free energy of solvation -61.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds