Wall clock time and date at job start Tue Mar 31 2020 12:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31882 * 122.59256 * 2 1 4 4 S 1.75359 * 111.38673 * 179.97438 * 3 2 1 5 5 C 1.75749 * 92.18158 * 359.97438 * 4 3 2 6 6 N 1.33930 * 131.27244 * 180.02562 * 5 4 3 7 7 C 1.31255 * 121.04049 * 180.02562 * 6 5 4 8 8 C 1.50705 * 118.90941 * 180.02562 * 7 6 5 9 9 N 1.32119 * 122.18166 * 359.71266 * 7 6 5 10 10 C 1.32448 * 121.18700 * 0.57865 * 9 7 6 11 11 N 1.38319 * 120.53095 * 179.71189 * 10 9 7 12 12 C 1.47448 * 110.99863 * 61.82251 * 11 10 9 13 13 C 1.54311 * 107.23363 * 236.74351 * 12 11 10 14 14 C 1.55142 * 103.02132 * 337.71374 * 13 12 11 15 15 O 1.42903 * 111.02309 * 277.54960 * 14 13 12 16 16 C 1.50699 * 110.99339 * 153.74553 * 14 13 12 17 17 H 1.08002 * 119.99985 * 247.73780 * 16 14 13 18 18 C 1.37878 * 120.00137 * 67.73259 * 16 14 13 19 19 N 1.31518 * 119.99696 * 0.02562 * 18 16 14 20 20 Si 1.86790 * 120.00003 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47204 * 90.00322 * 20 18 16 22 22 H 1.48499 * 109.47263 * 210.00092 * 20 18 16 23 23 H 1.48498 * 109.47392 * 330.00166 * 20 18 16 24 24 C 1.47839 * 111.00327 * 300.98152 * 11 10 9 25 25 C 1.39724 * 109.62082 * 0.02562 * 5 4 3 26 26 H 1.08998 * 109.47542 * 264.54687 * 1 2 3 27 27 H 1.08999 * 109.47054 * 24.55219 * 1 2 3 28 28 H 1.09004 * 109.46975 * 144.54189 * 1 2 3 29 29 H 1.08004 * 124.31233 * 359.97341 * 3 2 1 30 30 H 1.08992 * 109.47243 * 89.99829 * 8 7 6 31 31 H 1.09004 * 109.47146 * 209.99697 * 8 7 6 32 32 H 1.09000 * 109.47242 * 329.99353 * 8 7 6 33 33 H 1.08998 * 109.88689 * 356.15133 * 12 11 10 34 34 H 1.09001 * 109.88856 * 117.33615 * 12 11 10 35 35 H 1.09002 * 110.70787 * 96.09730 * 13 12 11 36 36 H 1.09005 * 110.70771 * 219.33654 * 13 12 11 37 37 H 0.96697 * 114.00106 * 292.28267 * 15 14 13 38 38 H 0.97000 * 119.99996 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.37369 * 265.19407 * 24 11 10 40 40 H 1.09002 * 110.37274 * 27.53013 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2175 1.1111 0.0000 4 16 3.9376 0.7704 0.0007 5 6 3.6619 -0.9654 0.0018 6 7 4.5175 -1.9958 0.0032 7 6 4.0846 -3.2349 0.0033 8 6 5.0898 -4.3578 0.0055 9 7 2.7969 -3.5304 0.0077 10 6 1.8750 -2.5795 0.0008 11 7 0.5305 -2.9044 -0.0005 12 6 0.1669 -3.6541 1.2160 13 6 -0.4544 -4.9911 0.7604 14 6 -0.9279 -4.6823 -0.6844 15 8 -2.1992 -4.0297 -0.6788 16 6 -0.9720 -5.9370 -1.5178 17 1 -0.2787 -6.0668 -2.3357 18 6 -1.8975 -6.9195 -1.2362 19 7 -2.7420 -6.7614 -0.2405 20 14 -1.9527 -8.4745 -2.2697 21 1 -1.0551 -9.4967 -1.6743 22 1 -3.3425 -8.9964 -2.3050 23 1 -1.5044 -8.1666 -3.6516 24 6 0.1849 -3.7255 -1.1803 25 6 2.2885 -1.2223 0.0010 26 1 -0.3634 -0.0977 1.0230 27 1 -0.3633 0.9347 -0.4270 28 1 -0.3633 -0.8371 -0.5962 29 1 1.7938 2.1046 -0.0004 30 1 5.3306 -4.6278 1.0336 31 1 4.6698 -5.2225 -0.5084 32 1 5.9960 -4.0353 -0.5072 33 1 1.0577 -3.8440 1.8146 34 1 -0.5595 -3.0868 1.7979 35 1 0.2940 -5.7835 0.7596 36 1 -1.3001 -5.2589 1.3940 37 1 -2.9272 -4.5892 -0.3756 38 1 -3.3933 -7.4524 -0.0425 39 1 -0.1891 -3.0937 -1.9860 40 1 1.0529 -4.2939 -1.5145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:21 Heat of formation + Delta-G solvation = 13.214976 kcal Electronic energy + Delta-G solvation = -25092.863006 eV Core-core repulsion = 21612.584285 eV Total energy + Delta-G solvation = -3480.278721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48990 -40.11443 -37.97850 -36.94877 -34.20917 -34.06420 -33.08584 -30.89871 -30.07157 -29.48005 -28.42265 -26.82056 -25.13575 -23.99174 -22.13746 -21.56184 -20.85776 -19.67020 -19.23868 -18.47986 -17.11969 -16.95116 -16.88589 -16.40905 -16.27655 -15.67313 -15.23666 -14.74359 -14.70064 -14.62020 -14.40968 -13.91195 -13.80090 -13.54180 -13.47870 -13.30115 -13.23587 -13.08081 -13.00701 -12.66651 -12.52148 -12.35784 -12.26964 -12.16547 -11.98045 -11.90031 -11.52601 -11.24136 -10.64727 -10.46623 -10.12369 -9.98149 -9.74322 -9.01783 -8.25035 -6.39579 -0.71675 -0.34294 0.05283 0.82307 1.10979 1.40055 1.42696 1.51888 2.33721 2.41940 2.46181 2.90871 3.00416 3.19722 3.47416 3.59461 3.86798 3.99843 4.06663 4.19800 4.29559 4.41739 4.57547 4.63489 4.64003 4.66702 4.70584 4.78268 4.89701 4.90830 4.97237 5.12076 5.19709 5.23368 5.43726 5.46239 5.53008 5.60954 5.72951 5.78421 6.05995 6.10988 6.63554 6.89169 7.31960 7.49745 8.81107 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.004143 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.061645 B = 6756.563580 C = 7725.775815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.064 4.064 3 C -0.198 4.198 4 S 0.194 5.806 5 C 0.067 3.933 6 N -0.509 5.509 7 C 0.328 3.672 8 C -0.078 4.078 9 N -0.568 5.568 10 C 0.392 3.608 11 N -0.469 5.469 12 C 0.067 3.933 13 C -0.129 4.129 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.561 4.561 17 H 0.051 0.949 18 C 0.036 3.964 19 N -0.911 5.911 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.277 1.277 23 H -0.274 1.274 24 C 0.077 3.923 25 C -0.177 4.177 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.215 0.785 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.379 0.621 38 H 0.272 0.728 39 H 0.070 0.930 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.851 13.139 2.754 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.331 4.331 4 S 0.453 5.547 5 C -0.184 4.184 6 N -0.227 5.227 7 C 0.056 3.944 8 C -0.136 4.136 9 N -0.287 5.287 10 C 0.147 3.853 11 N -0.192 5.192 12 C -0.060 4.060 13 C -0.169 4.169 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.600 4.600 17 H 0.070 0.930 18 C -0.165 4.165 19 N -0.550 5.550 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.203 1.203 23 H -0.199 1.199 24 C -0.049 4.049 25 C -0.192 4.192 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.772 14.277 2.627 19.336 hybrid contribution -1.914 -2.679 -0.200 3.299 sum 10.858 11.597 2.427 16.071 Atomic orbital electron populations 1.20570 0.87601 1.03612 1.03125 1.19595 0.98406 0.88938 1.00664 1.25476 0.95505 1.03436 1.08725 1.83877 1.04854 0.89432 1.76559 1.24477 0.91788 1.01829 1.00355 1.67968 1.38030 0.98891 1.17860 1.23770 0.89595 0.91675 0.89340 1.20690 0.95269 0.92554 1.05112 1.68427 1.03523 1.38716 1.18058 1.20577 0.90159 0.88212 0.86363 1.61700 1.09166 1.43738 1.04589 1.22726 0.99061 0.94011 0.90154 1.23039 0.99288 0.94658 0.99882 1.19550 0.81035 0.88024 0.90581 1.86072 1.18975 1.44250 1.90169 1.21742 1.18538 1.03181 1.16498 0.93028 1.25609 0.94390 1.00828 0.95669 1.69636 1.20168 1.35965 1.29260 0.85547 0.77557 0.79366 0.79091 1.20121 1.20262 1.19880 1.22914 0.97247 0.93576 0.91201 1.20587 0.94305 0.95079 1.09278 0.90934 0.89231 0.91549 0.76858 0.88015 0.89371 0.87882 0.93447 0.89611 0.93564 0.91769 0.77000 0.91845 0.91153 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 9.58 71.24 0.68 -1.59 16 2 C -0.06 -1.71 5.96 -18.93 -0.11 -1.82 16 3 C -0.20 -3.87 10.75 66.99 0.72 -3.15 16 4 S 0.19 4.15 23.23 -56.49 -1.31 2.84 16 5 C 0.07 2.07 7.69 84.73 0.65 2.72 16 6 N -0.51 -16.47 10.36 -183.87 -1.90 -18.37 16 7 C 0.33 10.71 7.64 138.81 1.06 11.78 16 8 C -0.08 -1.82 10.31 71.24 0.73 -1.09 16 9 N -0.57 -21.46 9.09 -184.26 -1.68 -23.13 16 10 C 0.39 14.83 5.21 133.97 0.70 15.53 16 11 N -0.47 -18.56 3.07 -689.53 -2.12 -20.67 16 12 C 0.07 2.65 6.73 86.64 0.58 3.24 16 13 C -0.13 -6.00 5.63 31.77 0.18 -5.82 16 14 C 0.25 12.33 0.89 -10.15 -0.01 12.32 16 15 O -0.59 -30.10 13.18 -148.98 -1.96 -32.06 16 16 C -0.56 -30.20 8.25 25.60 0.21 -29.99 16 17 H 0.05 2.81 7.77 -2.91 -0.02 2.78 16 18 C 0.04 1.87 5.29 84.65 0.45 2.32 16 19 N -0.91 -47.74 10.77 21.45 0.23 -47.51 16 20 Si 0.96 41.88 29.54 68.60 2.03 43.90 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.08 3.45 5.80 86.77 0.50 3.96 16 25 C -0.18 -5.87 6.06 -20.26 -0.12 -5.99 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 1.67 8.09 -2.39 -0.02 1.66 16 28 H 0.07 2.11 6.69 -2.39 -0.02 2.10 16 29 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.84 7.34 -2.39 -0.02 1.82 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.05 2.25 8.03 -2.39 -0.02 2.23 16 36 H 0.06 3.11 7.83 -2.38 -0.02 3.09 16 37 H 0.38 19.97 6.93 -74.06 -0.51 19.45 16 38 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.05 2.45 7.13 -2.39 -0.02 2.43 16 Total: -1.00 -61.21 341.40 0.08 -61.14 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.57 Total: 31.46 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.23 Total: 2.40 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.47 Total: -109.68 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.96 Total: -32.06 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.31 Total: 2.84 kcal Total: -61.21 0.08 -61.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.353 kcal (2) G-P(sol) polarization free energy of solvation -61.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds