Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34091 * 125.79285 * 2 1 4 4 C 1.34170 * 110.78379 * 180.17907 * 3 2 1 5 5 C 1.34323 * 109.04844 * 359.55709 * 4 3 2 6 6 C 1.36031 * 125.79033 * 179.68974 * 2 1 3 7 7 C 1.47911 * 127.13755 * 0.04085 * 6 2 1 8 8 N 1.31246 * 126.47006 * 313.29206 * 7 6 2 9 9 N 1.28506 * 109.99191 * 179.97438 * 8 7 6 10 10 C 1.31304 * 110.09666 * 359.97438 * 9 8 7 11 11 S 1.76199 * 126.38476 * 179.97438 * 10 9 8 12 12 C 1.81001 * 100.00238 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.46880 * 180.02562 * 12 11 10 14 14 C 1.50694 * 115.55211 * 40.14437 * 13 12 11 15 15 H 1.07997 * 120.00162 * 264.94905 * 14 13 12 16 16 C 1.37881 * 120.00350 * 84.94947 * 14 13 12 17 17 N 1.31514 * 119.99413 * 4.83740 * 16 14 13 18 18 Si 1.86797 * 120.00305 * 184.84240 * 16 14 13 19 19 H 1.48497 * 109.47308 * 89.99871 * 18 16 14 20 20 H 1.48497 * 109.46871 * 210.00030 * 18 16 14 21 21 H 1.48503 * 109.46957 * 329.99603 * 18 16 14 22 22 C 1.53002 * 117.49581 * 254.43287 * 13 12 11 23 23 C 1.53002 * 117.49428 * 185.81163 * 13 12 11 24 24 N 1.36720 * 107.22176 * 359.75972 * 10 9 8 25 25 C 1.46499 * 127.18669 * 180.28171 * 24 10 9 26 26 H 1.09003 * 109.46870 * 270.30959 * 1 2 3 27 27 H 1.08998 * 109.46902 * 30.30293 * 1 2 3 28 28 H 1.08998 * 109.47157 * 150.30583 * 1 2 3 29 29 H 1.08000 * 125.47384 * 179.81233 * 4 3 2 30 30 H 1.07999 * 126.98133 * 180.28812 * 5 4 3 31 31 H 1.08999 * 109.46751 * 300.00344 * 12 11 10 32 32 H 1.08997 * 109.47078 * 59.99879 * 12 11 10 33 33 H 0.97008 * 119.99636 * 185.00022 * 17 16 14 34 34 H 1.08995 * 117.50079 * 0.02562 * 22 13 12 35 35 H 1.09001 * 117.49483 * 145.03041 * 22 13 12 36 36 H 1.09004 * 117.49811 * 214.97589 * 23 13 12 37 37 H 1.08998 * 117.50470 * 359.97438 * 23 13 12 38 38 H 1.09000 * 109.46990 * 275.04905 * 25 24 10 39 39 H 1.08999 * 109.47197 * 35.04951 * 25 24 10 40 40 H 1.09003 * 109.47750 * 155.04839 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2912 1.0877 0.0000 4 6 3.5872 0.7402 -0.0039 5 6 3.6818 -0.5997 0.0032 6 6 2.3025 -1.1034 0.0060 7 6 1.8683 -2.5173 0.0128 8 7 0.9470 -3.0468 0.7831 9 7 0.8240 -4.2993 0.5236 10 6 1.6585 -4.6469 -0.4286 11 16 1.8488 -6.2586 -1.1148 12 6 0.6167 -7.1613 -0.1436 13 6 0.6014 -8.6287 -0.5765 14 6 1.9512 -9.2387 -0.8535 15 1 2.3349 -9.2653 -1.8627 16 6 2.6964 -9.7630 0.1813 17 7 2.1906 -9.8172 1.3941 18 14 4.4243 -10.3961 -0.1392 19 1 5.3990 -9.2916 0.0484 20 1 4.7329 -11.4951 0.8106 21 1 4.5147 -10.9051 -1.5313 22 6 -0.5767 -9.1008 -1.4310 23 6 -0.4713 -9.5337 0.0328 24 7 2.3488 -3.5240 -0.7916 25 6 3.3859 -3.4162 -1.8208 26 1 -0.3633 0.0056 1.0277 27 1 -0.3633 0.8873 -0.5185 28 1 -0.3633 -0.8927 -0.5091 29 1 4.4203 1.4274 -0.0077 30 1 4.5882 -1.1869 0.0067 31 1 0.8705 -7.0975 0.9146 32 1 -0.3677 -6.7232 -0.3081 33 1 2.7392 -10.1182 2.1354 34 1 -1.3405 -8.3660 -1.6851 35 1 -0.3755 -9.8529 -2.1939 36 1 -0.2009 -10.5705 0.2327 37 1 -1.1658 -9.0839 0.7423 38 1 4.3505 -3.6918 -1.3948 39 1 3.1488 -4.0862 -2.6471 40 1 3.4300 -2.3902 -2.1862 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = 96.961007 kcal Electronic energy + Delta-G solvation = -23662.128210 eV Core-core repulsion = 20185.480989 eV Total energy + Delta-G solvation = -3476.647221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.89433 -43.30305 -38.45711 -36.07975 -34.71791 -34.00461 -32.83810 -31.35187 -29.52056 -28.65277 -27.60769 -27.33571 -24.24426 -23.73442 -22.90068 -22.29730 -21.13017 -20.69213 -18.92738 -18.31829 -17.68934 -17.52942 -17.16696 -16.90480 -16.59734 -15.99096 -15.60679 -15.28270 -14.82532 -14.59406 -14.46390 -14.20646 -14.01163 -13.89369 -13.86419 -13.67295 -13.35456 -12.98142 -12.86266 -12.80523 -12.71243 -12.37172 -12.08472 -11.95195 -11.60745 -11.38064 -11.31559 -11.23503 -10.90877 -10.51092 -10.38812 -9.91503 -9.50430 -8.45313 -8.11078 -6.23642 0.11444 0.29198 0.84206 1.28231 1.37163 1.44353 1.46005 1.53670 1.61134 1.81562 1.95223 2.44178 3.19214 3.25198 3.45184 3.63026 3.64216 3.87825 4.17203 4.21429 4.22469 4.29266 4.34448 4.49698 4.55252 4.61074 4.65567 4.67153 4.68301 4.72639 4.85725 4.91629 4.95638 5.02065 5.17979 5.24367 5.34875 5.48479 5.66923 5.70148 5.76047 6.06405 6.33457 6.82136 7.45738 7.52110 8.96682 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.003314 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.530534 B = 8445.771725 C = 9225.161596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.050 3.950 3 O -0.177 6.177 4 C -0.011 4.011 5 C -0.209 4.209 6 C -0.154 4.154 7 C 0.252 3.748 8 N -0.311 5.311 9 N -0.337 5.337 10 C 0.146 3.854 11 S 0.052 5.948 12 C -0.036 4.036 13 C 0.020 3.980 14 C -0.501 4.501 15 H 0.062 0.938 16 C 0.036 3.964 17 N -0.902 5.902 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.263 1.263 22 C -0.181 4.181 23 C -0.147 4.147 24 N -0.461 5.461 25 C 0.067 3.933 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.254 0.746 30 H 0.166 0.834 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 21.265 -7.493 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.004 4.004 3 O -0.073 6.073 4 C -0.077 4.077 5 C -0.229 4.229 6 C -0.159 4.159 7 C -0.017 4.017 8 N -0.152 5.152 9 N -0.182 5.182 10 C -0.229 4.229 11 S 0.283 5.717 12 C -0.185 4.185 13 C 0.017 3.983 14 C -0.540 4.540 15 H 0.080 0.920 16 C -0.166 4.166 17 N -0.538 5.538 18 Si 0.766 3.234 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.187 1.187 22 C -0.218 4.218 23 C -0.187 4.187 24 N -0.155 5.155 25 C -0.074 4.074 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.270 0.730 30 H 0.184 0.816 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.443 20.935 -7.156 22.391 hybrid contribution 1.092 -0.558 0.618 1.374 sum 4.535 20.377 -6.538 21.875 Atomic orbital electron populations 1.20417 0.83336 1.04448 1.04751 1.22779 0.94579 0.82903 1.00124 1.83901 1.17844 1.33840 1.71682 1.24690 0.83734 0.96058 1.03172 1.22973 0.95378 0.95424 1.09160 1.18561 0.95001 0.86175 1.16139 1.22254 0.96170 0.90532 0.92717 1.74162 1.17355 1.01738 1.21920 1.74582 1.22057 1.06415 1.15122 1.27834 0.96881 0.97219 1.00920 1.85628 1.52377 0.87131 1.46604 1.23011 0.97335 0.98028 1.00176 1.18623 0.90763 0.88158 1.00710 1.20553 1.01215 1.38249 0.94004 0.92038 1.25606 1.01055 0.94816 0.95088 1.70124 1.36522 1.47009 1.00191 0.85812 0.81179 0.78042 0.78367 1.20009 1.21479 1.18692 1.23115 1.01353 1.03634 0.93658 1.22433 1.02046 0.99672 0.94509 1.46602 1.32151 1.05902 1.30824 1.22465 0.89063 1.06503 0.89347 0.88860 0.87599 0.90911 0.72975 0.81627 0.92604 0.91007 0.93140 0.89072 0.89623 0.91463 0.91156 0.88549 0.88087 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.23 71.24 0.73 -0.64 16 2 C 0.05 1.09 7.37 25.17 0.19 1.27 16 3 O -0.18 -3.12 10.55 0.84 0.01 -3.11 16 4 C -0.01 -0.14 12.04 66.93 0.81 0.66 16 5 C -0.21 -3.74 10.76 23.63 0.25 -3.48 16 6 C -0.15 -3.93 5.80 -18.98 -0.11 -4.04 16 7 C 0.25 8.39 7.49 136.25 1.02 9.41 16 8 N -0.31 -12.64 12.22 -50.78 -0.62 -13.26 16 9 N -0.34 -14.98 11.58 -56.73 -0.66 -15.64 16 10 C 0.15 5.79 8.07 179.49 1.45 7.24 16 11 S 0.05 2.09 20.78 -56.49 -1.17 0.92 16 12 C -0.04 -1.65 5.34 71.98 0.38 -1.27 16 13 C 0.02 0.93 1.73 -52.93 -0.09 0.84 16 14 C -0.50 -25.87 7.55 25.60 0.19 -25.67 16 15 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 16 C 0.04 1.92 5.43 84.66 0.46 2.38 16 17 N -0.90 -50.85 12.65 21.45 0.27 -50.58 16 18 Si 0.94 42.04 29.54 68.60 2.03 44.07 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.18 -7.47 9.88 30.60 0.30 -7.16 16 23 C -0.15 -6.84 9.17 30.60 0.28 -6.56 16 24 N -0.46 -14.81 3.24 -538.13 -1.74 -16.55 16 25 C 0.07 1.40 10.80 127.77 1.38 2.78 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 29 H 0.25 0.60 8.06 -2.91 -0.02 0.58 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.06 2.92 8.14 -2.40 -0.02 2.90 16 32 H 0.07 3.14 7.95 -2.40 -0.02 3.12 16 33 H 0.26 14.15 8.32 -92.70 -0.77 13.38 16 34 H 0.09 3.33 8.09 -2.39 -0.02 3.31 16 35 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.07 3.13 8.14 -2.39 -0.02 3.12 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.97 8.02 -2.39 -0.02 1.96 16 40 H 0.12 1.79 7.57 -2.39 -0.02 1.77 16 Total: -1.00 -70.17 362.33 6.40 -63.77 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.05 Total: 14.65 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 7.24 Total: -24.25 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -2.75 Total: -96.03 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.01 Total: -3.11 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.17 Total: 0.92 kcal Total: -70.17 6.40 -63.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.726 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds