Wall clock time and date at job start Tue Mar 31 2020 11:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48498 * 109.46994 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47010 * 119.99780 * 3 2 1 7 7 C 1.37878 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99729 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50273 * 299.92012 * 9 7 2 11 11 C 1.53112 * 109.50426 * 60.00081 * 9 7 2 12 12 C 1.53120 * 109.16264 * 177.63214 * 11 9 7 13 13 C 1.53043 * 109.27798 * 302.34621 * 12 11 9 14 14 N 1.46848 * 109.51992 * 59.17565 * 13 12 11 15 15 C 1.46906 * 110.99750 * 174.16249 * 14 13 12 16 16 C 1.50703 * 109.47109 * 66.04607 * 15 14 13 17 17 N 1.30926 * 126.40232 * 89.71046 * 16 15 14 18 18 C 1.35386 * 105.57801 * 179.91711 * 17 16 15 19 19 C 1.47734 * 126.44996 * 180.10921 * 18 17 16 20 20 C 1.34858 * 125.26884 * 180.26304 * 19 18 17 21 21 C 1.37827 * 114.72343 * 180.02562 * 20 19 18 22 22 C 1.33728 * 115.06528 * 359.97438 * 21 20 19 23 23 S 1.75859 * 109.74916 * 359.74072 * 22 21 20 24 24 N 1.31037 * 107.10211 * 0.35368 * 18 17 16 25 25 O 1.21289 * 110.04597 * 359.77543 * 24 18 17 26 26 C 1.46840 * 111.20084 * 298.25560 * 14 13 12 27 27 H 0.97003 * 119.99605 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.52400 * 57.72413 * 11 9 7 29 29 H 1.09000 * 109.57842 * 297.57096 * 11 9 7 30 30 H 1.09002 * 109.50462 * 182.40703 * 12 11 9 31 31 H 1.08995 * 109.50102 * 62.28471 * 12 11 9 32 32 H 1.09007 * 109.45770 * 299.16462 * 13 12 11 33 33 H 1.08994 * 109.46236 * 179.19372 * 13 12 11 34 34 H 1.08992 * 109.47459 * 186.04525 * 15 14 13 35 35 H 1.09004 * 109.47040 * 306.04676 * 15 14 13 36 36 H 1.07999 * 122.64277 * 359.97438 * 20 19 18 37 37 H 1.07998 * 122.46769 * 179.97438 * 21 20 19 38 38 H 1.07999 * 125.12092 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46536 * 181.75782 * 26 14 13 40 40 H 1.08998 * 109.47053 * 301.73095 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9343 -1.2720 13 6 0.6938 -5.0571 -1.2389 14 7 1.5097 -4.9349 -0.0240 15 6 2.4265 -6.0747 0.1113 16 6 3.4383 -6.0408 -1.0050 17 7 4.5978 -5.4330 -0.9845 18 6 5.1570 -5.6757 -2.1934 19 6 6.4761 -5.2028 -2.6611 20 6 7.0084 -5.4550 -3.8743 21 6 8.2559 -4.9069 -4.0816 22 6 8.7469 -4.2100 -3.0513 23 16 7.5923 -4.2173 -1.7249 24 7 4.3056 -6.4044 -2.8725 25 8 3.3172 -6.6207 -2.2035 26 6 2.2441 -3.6635 -0.0033 27 1 -0.4850 0.8401 -0.0004 28 1 0.9925 -2.4835 -2.1398 29 1 -0.3666 -1.7789 -1.2306 30 1 -0.9407 -4.0161 -2.1816 31 1 -0.9968 -4.0156 -0.4018 32 1 1.3361 -4.9834 -2.1166 33 1 0.1865 -6.0218 -1.2403 34 1 2.9413 -6.0152 1.0701 35 1 1.8601 -7.0047 0.0601 36 1 6.4978 -6.0411 -4.6241 37 1 8.7971 -5.0312 -5.0080 38 1 9.7059 -3.7134 -3.0378 39 1 2.8628 -3.6160 0.8929 40 1 2.8791 -3.5963 -0.8867 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:45 Heat of formation + Delta-G solvation = 104.078217 kcal Electronic energy + Delta-G solvation = -24435.900243 eV Core-core repulsion = 20959.561647 eV Total energy + Delta-G solvation = -3476.338595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.46870 -38.56179 -38.06396 -35.75995 -34.36385 -32.68428 -31.39231 -29.98909 -29.56604 -26.97293 -25.28881 -24.96250 -23.69824 -22.76628 -21.64255 -21.33142 -19.21868 -18.84751 -18.26267 -17.99990 -16.69414 -16.40545 -15.83772 -15.33247 -14.84154 -14.59473 -14.25473 -13.91751 -13.53359 -13.40791 -13.06310 -12.90342 -12.68209 -12.51609 -12.35786 -12.23954 -11.85573 -11.76063 -11.45909 -11.14668 -10.93718 -10.87119 -10.72243 -10.69334 -10.32848 -10.17787 -9.87346 -9.53291 -9.13830 -8.76966 -8.73461 -8.67455 -8.34828 -8.12012 -5.98455 -4.04213 0.34069 1.28056 1.29725 1.78844 2.15556 2.81753 2.85599 3.32728 3.36998 3.40167 3.44691 4.08643 4.25070 4.48346 4.80364 4.89197 5.12225 5.24114 5.31748 5.33381 5.44440 5.53962 5.64181 5.68864 5.82029 5.90379 5.96447 6.06913 6.14133 6.15864 6.32554 6.42752 6.60618 6.67693 6.86995 7.09942 7.24200 7.40222 7.57120 7.74979 8.02560 8.13148 8.14755 8.45197 8.98951 9.60139 11.07668 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.004531 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.626945 B = 6178.419885 C = 8061.259401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.037 0.963 11 C -0.113 4.113 12 C -0.117 4.117 13 C 0.054 3.946 14 N -0.512 5.512 15 C 0.140 3.860 16 C 0.166 3.834 17 N -0.466 5.466 18 C 0.234 3.766 19 C -0.127 4.127 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.215 4.215 23 S 0.196 5.804 24 N -0.374 5.374 25 O 0.080 5.920 26 C 0.063 3.937 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.068 0.932 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -13.223 -4.387 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.055 0.945 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.074 4.074 14 N -0.235 5.235 15 C 0.009 3.991 16 C -0.058 4.058 17 N -0.199 5.199 18 C -0.036 4.036 19 C -0.247 4.247 20 C -0.132 4.132 21 C -0.170 4.170 22 C -0.353 4.353 23 S 0.462 5.538 24 N -0.082 5.082 25 O 0.020 5.980 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.086 0.914 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.921 -12.473 -3.130 16.872 hybrid contribution 0.995 0.369 -2.241 2.479 sum 11.916 -12.104 -5.371 17.814 Atomic orbital electron populations 1.69873 1.05806 1.26464 1.50596 1.24905 0.94820 0.98894 0.95053 0.86701 0.79661 0.83283 0.78631 1.20429 1.21261 1.20188 1.21073 0.92824 0.90530 1.50848 0.92877 1.18677 0.92476 0.90239 0.94904 0.94499 1.21687 1.00112 0.94834 0.98467 1.21678 0.97018 0.96093 1.00656 1.22227 0.95785 0.99755 0.89626 1.62513 1.20835 1.02345 1.37789 1.21486 0.88520 0.97912 0.91202 1.30590 0.95077 0.90432 0.89684 1.72133 1.06863 1.21751 1.19182 1.22729 0.95482 0.97501 0.87890 1.21323 0.95208 1.08778 0.99357 1.20319 0.95723 1.01337 0.95793 1.19999 0.95880 1.00668 1.00477 1.26074 1.04547 1.06576 0.98058 1.84623 1.06802 1.47105 1.15315 1.74942 0.96057 1.19094 1.18133 1.85292 1.33324 1.56370 1.23013 1.22477 0.96431 0.87590 0.99803 0.92982 0.95370 0.88819 0.93148 0.91645 0.95700 0.91367 0.86123 0.87335 0.83698 0.83672 0.81192 0.91381 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.35 55.43 0.63 -24.54 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.13 8.57 -34.44 -0.29 -14.42 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.05 0.89 5.14 -3.83 -0.02 0.87 16 14 N -0.51 -8.68 4.86 -236.10 -1.15 -9.82 16 15 C 0.14 1.84 6.00 -4.97 -0.03 1.81 16 16 C 0.17 2.55 5.80 -12.98 -0.08 2.47 16 17 N -0.47 -8.01 10.93 -9.88 -0.11 -8.12 16 18 C 0.23 3.95 8.02 -156.05 -1.25 2.70 16 19 C -0.13 -1.88 6.44 -36.90 -0.24 -2.12 16 20 C -0.10 -1.20 10.05 -40.93 -0.41 -1.61 16 21 C -0.14 -1.40 10.16 -41.31 -0.42 -1.82 16 22 C -0.22 -2.11 11.23 29.15 0.33 -1.78 16 23 S 0.20 2.50 23.32 -107.50 -2.51 -0.01 16 24 N -0.37 -6.25 12.16 30.99 0.38 -5.87 16 25 O 0.08 1.26 10.89 17.99 0.20 1.45 16 26 C 0.06 1.32 4.16 -3.83 -0.02 1.31 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.44 7.15 -51.93 -0.37 0.07 16 33 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 40 H 0.02 0.56 6.86 -51.93 -0.36 0.20 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -30.43 343.95 -10.65 -41.09 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.23 Total: -0.90 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.03 Total: -14.87 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.25 Total: -48.36 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.51 Total: -0.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.43 -10.65 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.164 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds