Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48498 * 109.46994 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47010 * 119.99780 * 3 2 1 7 7 C 1.37878 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99729 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50273 * 299.92012 * 9 7 2 11 11 C 1.53112 * 109.50426 * 60.00081 * 9 7 2 12 12 C 1.53120 * 109.16264 * 177.63214 * 11 9 7 13 13 C 1.53043 * 109.27798 * 302.34621 * 12 11 9 14 14 N 1.46848 * 109.51992 * 59.17565 * 13 12 11 15 15 C 1.46906 * 110.99750 * 174.16249 * 14 13 12 16 16 C 1.50703 * 109.47109 * 66.04607 * 15 14 13 17 17 N 1.30926 * 126.40232 * 89.71046 * 16 15 14 18 18 C 1.35386 * 105.57801 * 179.91711 * 17 16 15 19 19 C 1.47734 * 126.44996 * 180.10921 * 18 17 16 20 20 C 1.34858 * 125.26884 * 180.26304 * 19 18 17 21 21 C 1.37827 * 114.72343 * 180.02562 * 20 19 18 22 22 C 1.33728 * 115.06528 * 359.97438 * 21 20 19 23 23 S 1.75859 * 109.74916 * 359.74072 * 22 21 20 24 24 N 1.31037 * 107.10211 * 0.35368 * 18 17 16 25 25 O 1.21289 * 110.04597 * 359.77543 * 24 18 17 26 26 C 1.46840 * 111.20084 * 298.25560 * 14 13 12 27 27 H 0.97003 * 119.99605 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.52400 * 57.72413 * 11 9 7 29 29 H 1.09000 * 109.57842 * 297.57096 * 11 9 7 30 30 H 1.09002 * 109.50462 * 182.40703 * 12 11 9 31 31 H 1.08995 * 109.50102 * 62.28471 * 12 11 9 32 32 H 1.09007 * 109.45770 * 299.16462 * 13 12 11 33 33 H 1.08994 * 109.46236 * 179.19372 * 13 12 11 34 34 H 1.08992 * 109.47459 * 186.04525 * 15 14 13 35 35 H 1.09004 * 109.47040 * 306.04676 * 15 14 13 36 36 H 1.07999 * 122.64277 * 359.97438 * 20 19 18 37 37 H 1.07998 * 122.46769 * 179.97438 * 21 20 19 38 38 H 1.07999 * 125.12092 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46536 * 181.75782 * 26 14 13 40 40 H 1.08998 * 109.47053 * 301.73095 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9343 -1.2720 13 6 0.6938 -5.0571 -1.2389 14 7 1.5097 -4.9349 -0.0240 15 6 2.4265 -6.0747 0.1113 16 6 3.4383 -6.0408 -1.0050 17 7 4.5978 -5.4330 -0.9845 18 6 5.1570 -5.6757 -2.1934 19 6 6.4761 -5.2028 -2.6611 20 6 7.0084 -5.4550 -3.8743 21 6 8.2559 -4.9069 -4.0816 22 6 8.7469 -4.2100 -3.0513 23 16 7.5923 -4.2173 -1.7249 24 7 4.3056 -6.4044 -2.8725 25 8 3.3172 -6.6207 -2.2035 26 6 2.2441 -3.6635 -0.0033 27 1 -0.4850 0.8401 -0.0004 28 1 0.9925 -2.4835 -2.1398 29 1 -0.3666 -1.7789 -1.2306 30 1 -0.9407 -4.0161 -2.1816 31 1 -0.9968 -4.0156 -0.4018 32 1 1.3361 -4.9834 -2.1166 33 1 0.1865 -6.0218 -1.2403 34 1 2.9413 -6.0152 1.0701 35 1 1.8601 -7.0047 0.0601 36 1 6.4978 -6.0411 -4.6241 37 1 8.7971 -5.0312 -5.0080 38 1 9.7059 -3.7134 -3.0378 39 1 2.8628 -3.6160 0.8929 40 1 2.8791 -3.5963 -0.8867 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = 84.034339 kcal Electronic energy + Delta-G solvation = -24436.769410 eV Core-core repulsion = 20959.561647 eV Total energy + Delta-G solvation = -3477.207763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.67760 -40.06656 -38.97471 -36.98468 -35.99850 -34.31799 -32.86145 -31.75630 -30.59346 -28.29914 -26.99639 -26.23013 -24.95783 -24.10023 -23.14617 -22.76005 -20.60716 -19.95584 -19.44474 -19.29071 -18.44776 -17.78280 -16.99697 -16.75611 -16.38242 -15.99512 -15.80573 -15.08617 -14.90232 -14.52789 -14.47201 -14.40049 -14.06663 -13.82794 -13.69419 -13.42543 -13.26556 -12.99186 -12.85521 -12.83964 -12.60728 -12.46275 -12.28353 -11.86455 -11.81335 -11.76380 -11.57674 -11.40168 -10.92165 -10.72656 -10.40708 -9.72521 -9.62431 -9.59220 -8.10810 -6.23991 -0.65596 0.13738 0.34474 0.91314 1.12608 1.38277 1.39043 1.46897 1.70306 1.80735 2.36181 2.40143 2.89376 3.00199 3.16296 3.78040 4.05797 4.06493 4.12984 4.20204 4.31256 4.35833 4.44266 4.51658 4.57974 4.66510 4.70355 4.80429 4.83679 4.93729 4.95871 5.02942 5.11465 5.15437 5.32664 5.35251 5.46465 5.60271 5.80865 6.02487 6.06308 6.13510 6.39393 6.86390 6.95746 7.43310 8.93564 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.004531 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.626945 B = 6178.419885 C = 8061.259401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.042 0.958 9 C 0.053 3.947 10 H 0.009 0.991 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.058 3.942 14 N -0.513 5.513 15 C 0.141 3.859 16 C 0.169 3.831 17 N -0.493 5.493 18 C 0.225 3.775 19 C -0.172 4.172 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.187 4.187 23 S 0.156 5.844 24 N -0.390 5.390 25 O 0.082 5.918 26 C 0.085 3.915 27 H 0.261 0.739 28 H 0.007 0.993 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.011 0.989 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.182 0.818 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -14.422 -5.097 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.061 0.939 9 C 0.034 3.966 10 H 0.027 0.973 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.069 4.069 14 N -0.235 5.235 15 C 0.011 3.989 16 C -0.054 4.054 17 N -0.227 5.227 18 C -0.045 4.045 19 C -0.291 4.291 20 C -0.122 4.122 21 C -0.173 4.173 22 C -0.324 4.324 23 S 0.420 5.580 24 N -0.099 5.099 25 O 0.023 5.977 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.199 0.801 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 12.073 -13.692 -3.835 18.653 hybrid contribution 0.698 0.742 -2.067 2.305 sum 12.771 -12.949 -5.903 19.121 Atomic orbital electron populations 1.69997 1.06895 1.27162 1.50951 1.25619 0.95658 1.01959 0.94721 0.85788 0.78630 0.79637 0.78696 1.20346 1.20422 1.19444 1.21417 0.92618 0.92429 1.51156 0.93938 1.18595 0.92875 0.90978 0.94110 0.97262 1.21486 0.99058 0.97014 0.96859 1.21591 0.97458 0.94008 1.01758 1.22260 0.94993 1.00855 0.88814 1.62394 1.21322 1.01719 1.38105 1.21824 0.88158 0.97996 0.90916 1.30932 0.95003 0.89680 0.89821 1.72129 1.07987 1.22613 1.19939 1.23153 0.96282 0.97258 0.87764 1.21527 0.95420 1.11261 1.00860 1.20639 0.96451 1.00225 0.94848 1.20339 0.95009 1.00096 1.01903 1.26503 1.04644 1.05209 0.96010 1.84696 1.08111 1.47703 1.17480 1.74894 0.96474 1.19950 1.18565 1.85249 1.33042 1.56377 1.23026 1.21997 0.95065 0.88672 0.98487 0.92936 0.97400 0.92009 0.91072 0.91562 0.97033 0.86746 0.84684 0.82600 0.83285 0.80119 0.77600 0.91915 0.97852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 11.35 21.45 0.24 -52.77 16 2 C 0.02 1.11 5.30 84.65 0.45 1.56 16 3 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.64 8.57 25.60 0.22 -30.43 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 11 C -0.11 -5.13 5.02 30.67 0.15 -4.97 16 12 C -0.11 -4.05 6.09 30.65 0.19 -3.86 16 13 C 0.06 1.80 5.14 86.33 0.44 2.24 16 14 N -0.51 -16.65 4.86 -900.90 -4.38 -21.02 16 15 C 0.14 3.36 6.00 85.56 0.51 3.88 16 16 C 0.17 5.04 5.80 88.35 0.51 5.56 16 17 N -0.49 -17.15 10.93 -302.27 -3.30 -20.46 16 18 C 0.23 7.71 8.02 136.96 1.10 8.81 16 19 C -0.17 -5.10 6.44 24.01 0.15 -4.95 16 20 C -0.09 -2.04 10.05 21.40 0.22 -1.82 16 21 C -0.14 -2.49 10.16 21.15 0.21 -2.28 16 22 C -0.19 -3.17 11.23 66.80 0.75 -2.42 16 23 S 0.16 3.94 23.32 -56.49 -1.32 2.62 16 24 N -0.39 -13.02 12.16 -58.79 -0.72 -13.73 16 25 O 0.08 2.51 10.89 74.43 0.81 3.32 16 26 C 0.09 3.63 4.16 86.33 0.36 3.98 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.06 3.36 6.15 -2.39 -0.01 3.35 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.01 0.39 7.15 -2.38 -0.02 0.38 16 33 H 0.11 2.59 8.06 -2.39 -0.02 2.57 16 34 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.16 2.29 8.06 -2.38 -0.02 2.27 16 36 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 37 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.06 2.69 8.12 -2.38 -0.02 2.67 16 40 H 0.00 0.15 6.86 -2.39 -0.02 0.13 16 Total: -1.00 -70.02 343.95 -0.33 -70.36 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.05 Total: 6.99 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 5.24 Total: -22.00 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -8.15 Total: -107.98 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.81 Total: 3.32 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.32 Total: 2.62 kcal Total: -70.02 -0.33 -70.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.391 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds