Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47040 * 269.99641 * 3 2 1 5 5 H 1.48492 * 109.47101 * 29.99554 * 3 2 1 6 6 H 1.48501 * 109.46905 * 149.99735 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 N 1.30929 * 126.39696 * 89.72407 * 16 15 14 18 18 C 1.35400 * 105.57621 * 179.86395 * 17 16 15 19 19 C 1.47733 * 126.44827 * 180.14529 * 18 17 16 20 20 C 1.34860 * 125.26811 * 179.97438 * 19 18 17 21 21 C 1.37819 * 114.71876 * 179.79352 * 20 19 18 22 22 C 1.33721 * 115.07393 * 0.50362 * 21 20 19 23 23 S 1.75856 * 109.74436 * 359.73022 * 22 21 20 24 24 N 1.31043 * 107.09649 * 0.39392 * 18 17 16 25 25 O 1.21283 * 110.04450 * 359.75016 * 24 18 17 26 26 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 27 27 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 29 29 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 30 30 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 31 31 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 32 32 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 33 33 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 34 34 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 35 35 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 36 36 H 1.08003 * 122.63901 * 359.97438 * 20 19 18 37 37 H 1.08007 * 122.46315 * 180.23524 * 21 20 19 38 38 H 1.08002 * 125.12470 * 179.72813 * 22 21 20 39 39 H 1.08993 * 109.46639 * 178.24333 * 26 14 13 40 40 H 1.09010 * 109.45973 * 58.27499 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 7 1.2656 -7.8232 -1.4905 18 6 0.5826 -8.9571 -1.2057 19 6 -0.0377 -9.8765 -2.1816 20 6 -0.7134 -11.0016 -1.8709 21 6 -1.2062 -11.6957 -2.9547 22 6 -0.9312 -11.1552 -4.1465 23 16 -0.0029 -9.6776 -3.9288 24 7 0.5707 -9.0824 0.0987 25 8 1.1694 -8.1600 0.6103 26 6 2.2447 -3.6630 0.0060 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2288 29 1 0.9900 -2.4814 2.1413 30 1 -0.9964 -4.0165 0.4025 31 1 -0.9415 -4.0154 2.1823 32 1 1.3358 -4.9816 2.1198 33 1 0.1875 -6.0213 1.2435 34 1 3.0943 -5.9072 -0.9529 35 1 3.0177 -6.1750 0.8051 36 1 -0.8593 -11.3310 -0.8528 37 1 -1.7693 -12.6114 -2.8494 38 1 -1.2336 -11.5646 -5.0991 39 1 2.8640 -3.6159 -0.8897 40 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = 104.370002 kcal Electronic energy + Delta-G solvation = -23687.798306 eV Core-core repulsion = 20211.472363 eV Total energy + Delta-G solvation = -3476.325943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.54707 -38.45765 -38.15850 -35.85872 -34.39428 -32.76021 -31.52407 -30.02241 -29.63328 -27.08142 -25.33494 -25.01590 -23.74088 -22.62481 -21.87049 -21.28116 -19.18026 -18.76627 -18.46216 -18.17018 -16.76903 -16.42537 -15.90308 -15.32448 -14.95915 -14.49533 -14.32742 -13.82071 -13.63350 -13.53893 -13.26271 -13.00294 -12.72510 -12.50484 -12.37792 -12.24566 -11.95383 -11.84483 -11.49595 -11.21158 -10.98116 -10.95686 -10.77117 -10.71673 -10.41513 -10.17267 -9.89941 -9.54508 -9.17210 -8.83264 -8.77848 -8.76848 -8.34824 -7.95124 -6.00460 -4.07183 0.24287 1.18792 1.20175 1.68566 2.06495 2.70703 2.76461 3.29687 3.35292 3.36817 3.38987 4.01135 4.27699 4.46826 4.71047 4.79271 5.08237 5.19243 5.25615 5.29856 5.32171 5.51515 5.57380 5.69254 5.73420 5.84045 5.95333 5.99269 6.06498 6.13087 6.25245 6.40286 6.61609 6.66335 6.83513 7.11542 7.24768 7.43094 7.57282 7.72887 8.02241 8.06979 8.12637 8.41765 8.96606 9.57516 11.05545 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.002615 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.388928 B =10703.971156 C =11138.943285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.055 3.945 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.057 3.943 14 N -0.532 5.532 15 C 0.141 3.859 16 C 0.213 3.787 17 N -0.463 5.463 18 C 0.234 3.766 19 C -0.127 4.127 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.215 4.215 23 S 0.193 5.807 24 N -0.373 5.373 25 O 0.079 5.921 26 C 0.070 3.930 27 H 0.260 0.740 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.067 0.933 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -21.024 -3.579 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.071 4.071 14 N -0.259 5.259 15 C 0.011 3.989 16 C -0.008 4.008 17 N -0.196 5.196 18 C -0.037 4.037 19 C -0.246 4.246 20 C -0.131 4.131 21 C -0.170 4.170 22 C -0.352 4.352 23 S 0.458 5.542 24 N -0.081 5.081 25 O 0.019 5.981 26 C -0.056 4.056 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.188 0.812 39 H 0.085 0.915 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.089 -20.464 -4.997 21.065 hybrid contribution 0.330 -0.083 1.752 1.784 sum 0.419 -20.547 -3.245 20.806 Atomic orbital electron populations 1.69893 1.05870 1.26414 1.50410 1.24935 0.94826 0.99006 0.95047 0.86613 0.79815 0.83559 0.78098 1.20688 1.21296 1.19986 1.21102 0.92842 0.90471 1.51038 0.92681 1.18679 0.92556 0.90044 0.95055 0.94570 1.21678 1.00155 0.94625 0.98514 1.21666 0.97046 0.96226 1.00462 1.22171 0.95927 0.99050 0.89918 1.62031 1.23344 1.01461 1.39036 1.20646 0.91746 0.82598 1.03907 1.28798 0.94987 0.95462 0.81571 1.72100 1.14817 1.07377 1.25355 1.22725 0.99055 0.93127 0.88792 1.21311 1.08534 0.98900 0.95885 1.20338 0.97909 0.93546 1.01298 1.20013 1.03597 1.02378 0.90992 1.26075 1.05892 1.00603 1.02618 1.84584 1.50703 1.21546 0.97346 1.74979 1.15087 1.08334 1.09660 1.85290 1.50136 1.26026 1.36678 1.22401 0.96655 0.87008 0.99518 0.92995 0.88916 0.94889 0.92107 0.93200 0.94774 0.92801 0.86180 0.91165 0.83612 0.83628 0.81171 0.91491 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 11.35 55.43 0.63 -24.20 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.33 2.27 -91.69 -0.21 1.12 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.54 5.02 -26.61 -0.13 -2.68 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 13 C 0.06 0.97 5.31 -3.83 -0.02 0.95 16 14 N -0.53 -9.19 4.65 -236.11 -1.10 -10.29 16 15 C 0.14 1.92 5.59 -4.98 -0.03 1.89 16 16 C 0.21 3.15 7.06 -12.98 -0.09 3.06 16 17 N -0.46 -7.44 11.58 -9.88 -0.11 -7.55 16 18 C 0.23 3.59 8.02 -156.03 -1.25 2.33 16 19 C -0.13 -1.66 6.44 -36.90 -0.24 -1.90 16 20 C -0.10 -1.04 10.05 -40.93 -0.41 -1.45 16 21 C -0.14 -1.18 10.16 -41.32 -0.42 -1.60 16 22 C -0.21 -1.74 11.23 29.15 0.33 -1.41 16 23 S 0.19 2.09 23.31 -107.50 -2.51 -0.41 16 24 N -0.37 -5.75 12.16 30.99 0.38 -5.37 16 25 O 0.08 1.17 10.54 18.01 0.19 1.36 16 26 C 0.07 1.36 4.68 -3.83 -0.02 1.34 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 28 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.87 6.54 -51.93 -0.34 0.53 16 34 H 0.12 1.47 7.98 -51.93 -0.41 1.06 16 35 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.15 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 40 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -29.38 346.12 -10.63 -40.01 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.26 Total: -1.52 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.04 Total: -12.98 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.21 Total: -47.41 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.19 Total: 1.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.51 Total: -0.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.38 -10.63 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.376 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds