Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47040 * 269.99641 * 3 2 1 5 5 H 1.48492 * 109.47101 * 29.99554 * 3 2 1 6 6 H 1.48501 * 109.46905 * 149.99735 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 N 1.30929 * 126.39696 * 89.72407 * 16 15 14 18 18 C 1.35400 * 105.57621 * 179.86395 * 17 16 15 19 19 C 1.47733 * 126.44827 * 180.14529 * 18 17 16 20 20 C 1.34860 * 125.26811 * 179.97438 * 19 18 17 21 21 C 1.37819 * 114.71876 * 179.79352 * 20 19 18 22 22 C 1.33721 * 115.07393 * 0.50362 * 21 20 19 23 23 S 1.75856 * 109.74436 * 359.73022 * 22 21 20 24 24 N 1.31043 * 107.09649 * 0.39392 * 18 17 16 25 25 O 1.21283 * 110.04450 * 359.75016 * 24 18 17 26 26 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 27 27 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 29 29 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 30 30 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 31 31 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 32 32 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 33 33 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 34 34 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 35 35 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 36 36 H 1.08003 * 122.63901 * 359.97438 * 20 19 18 37 37 H 1.08007 * 122.46315 * 180.23524 * 21 20 19 38 38 H 1.08002 * 125.12470 * 179.72813 * 22 21 20 39 39 H 1.08993 * 109.46639 * 178.24333 * 26 14 13 40 40 H 1.09010 * 109.45973 * 58.27499 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 7 1.2656 -7.8232 -1.4905 18 6 0.5826 -8.9571 -1.2057 19 6 -0.0377 -9.8765 -2.1816 20 6 -0.7134 -11.0016 -1.8709 21 6 -1.2062 -11.6957 -2.9547 22 6 -0.9312 -11.1552 -4.1465 23 16 -0.0029 -9.6776 -3.9288 24 7 0.5707 -9.0824 0.0987 25 8 1.1694 -8.1600 0.6103 26 6 2.2447 -3.6630 0.0060 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2288 29 1 0.9900 -2.4814 2.1413 30 1 -0.9964 -4.0165 0.4025 31 1 -0.9415 -4.0154 2.1823 32 1 1.3358 -4.9816 2.1198 33 1 0.1875 -6.0213 1.2435 34 1 3.0943 -5.9072 -0.9529 35 1 3.0177 -6.1750 0.8051 36 1 -0.8593 -11.3310 -0.8528 37 1 -1.7693 -12.6114 -2.8494 38 1 -1.2336 -11.5646 -5.0991 39 1 2.8640 -3.6159 -0.8897 40 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = 85.766874 kcal Electronic energy + Delta-G solvation = -23688.604998 eV Core-core repulsion = 20211.472363 eV Total energy + Delta-G solvation = -3477.132635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.66921 -39.93596 -38.94128 -36.98318 -35.95457 -34.30632 -32.97869 -31.69981 -30.56642 -28.36620 -26.92583 -26.19134 -24.90383 -23.91495 -23.30484 -22.64554 -20.39943 -19.97564 -19.47802 -19.33775 -18.38156 -17.74750 -16.95552 -16.65030 -16.33101 -16.16505 -15.52223 -15.02994 -14.84596 -14.73224 -14.47623 -14.34646 -13.96084 -13.80746 -13.64532 -13.47043 -13.23181 -12.93602 -12.85909 -12.76611 -12.57728 -12.50246 -12.26957 -11.88816 -11.77702 -11.72580 -11.50970 -11.39031 -10.90464 -10.64984 -10.36360 -9.68007 -9.57299 -9.29935 -8.04829 -6.18581 -0.63122 0.12197 0.38280 0.94977 1.14082 1.44788 1.45842 1.55217 1.63797 1.84260 2.35184 2.46115 2.94202 3.02988 3.23286 3.74946 4.04707 4.09908 4.12540 4.25052 4.28114 4.40275 4.43162 4.52948 4.58982 4.61312 4.70939 4.80855 4.87655 4.96286 5.00187 5.05066 5.17361 5.19729 5.35742 5.36352 5.51618 5.67368 5.89128 6.09781 6.11600 6.21262 6.44528 6.94939 6.96034 7.49736 8.99994 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.002615 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.388928 B =10703.971156 C =11138.943285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.051 3.949 10 H -0.007 1.007 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.064 3.936 14 N -0.550 5.550 15 C 0.145 3.855 16 C 0.215 3.785 17 N -0.486 5.486 18 C 0.230 3.770 19 C -0.172 4.172 20 C -0.084 4.084 21 C -0.146 4.146 22 C -0.186 4.186 23 S 0.162 5.838 24 N -0.387 5.387 25 O 0.079 5.921 26 C 0.085 3.915 27 H 0.258 0.742 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.180 0.820 38 H 0.206 0.794 39 H 0.072 0.928 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -22.995 -3.653 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.032 3.968 10 H 0.011 0.989 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.063 4.063 14 N -0.277 5.277 15 C 0.016 3.984 16 C -0.007 4.007 17 N -0.220 5.220 18 C -0.040 4.040 19 C -0.291 4.291 20 C -0.120 4.120 21 C -0.175 4.175 22 C -0.323 4.323 23 S 0.427 5.573 24 N -0.096 5.096 25 O 0.020 5.980 26 C -0.041 4.041 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.197 0.803 38 H 0.223 0.777 39 H 0.090 0.910 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.849 -22.445 -5.061 23.024 hybrid contribution 0.020 0.424 1.697 1.750 sum 0.869 -22.021 -3.364 22.293 Atomic orbital electron populations 1.70055 1.07311 1.26947 1.51480 1.25733 0.95572 1.02407 0.94968 0.85626 0.78844 0.79517 0.78064 1.20442 1.21359 1.18879 1.21521 0.93269 0.91735 1.50317 0.92222 1.18602 0.93063 0.91518 0.93581 0.98916 1.21471 0.99270 0.95564 0.97907 1.21561 0.97456 0.95243 1.00525 1.22083 0.95527 0.98190 0.90544 1.61817 1.24468 1.01837 1.39575 1.20770 0.91024 0.80495 1.06147 1.28967 0.94678 0.95608 0.81399 1.72101 1.15607 1.08120 1.26174 1.23146 0.98569 0.93130 0.89174 1.21499 1.11104 1.00110 0.96403 1.20639 0.96353 0.92661 1.02366 1.20330 1.03705 1.03325 0.90113 1.26508 1.03396 0.98320 1.04112 1.84641 1.52106 1.23965 0.96583 1.74941 1.15965 1.08869 1.09866 1.85257 1.50187 1.26026 1.36557 1.22041 0.95316 0.86435 1.00313 0.93244 0.92566 0.94850 0.94142 0.91239 0.92990 0.91751 0.84799 0.87848 0.83305 0.80310 0.77670 0.90956 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.08 11.35 21.45 0.24 -52.83 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -28.16 8.56 25.60 0.22 -27.94 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.50 2.27 -11.49 -0.03 2.47 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.10 -4.83 5.02 30.67 0.15 -4.68 16 12 C -0.11 -4.22 6.09 30.64 0.19 -4.04 16 13 C 0.06 2.07 5.31 86.32 0.46 2.53 16 14 N -0.55 -18.35 4.65 -900.93 -4.19 -22.54 16 15 C 0.14 3.63 5.59 85.56 0.48 4.11 16 16 C 0.21 6.12 7.06 88.35 0.62 6.75 16 17 N -0.49 -15.53 11.58 -302.27 -3.50 -19.03 16 18 C 0.23 7.05 8.02 136.95 1.10 8.14 16 19 C -0.17 -4.42 6.44 24.01 0.15 -4.27 16 20 C -0.08 -1.70 10.05 21.39 0.22 -1.49 16 21 C -0.15 -2.02 10.16 21.14 0.21 -1.81 16 22 C -0.19 -2.47 11.23 66.79 0.75 -1.72 16 23 S 0.16 3.40 23.31 -56.49 -1.32 2.08 16 24 N -0.39 -11.79 12.16 -58.78 -0.72 -12.50 16 25 O 0.08 2.25 10.54 74.51 0.79 3.04 16 26 C 0.09 3.22 4.68 86.33 0.40 3.63 16 27 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 28 H 0.06 3.02 6.15 -2.39 -0.01 3.00 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.97 6.54 -2.39 -0.02 1.96 16 34 H 0.13 3.00 7.98 -2.39 -0.02 2.98 16 35 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 39 H 0.07 2.63 8.01 -2.39 -0.02 2.61 16 40 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -66.05 346.12 -0.23 -66.28 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.05 Total: 7.79 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.38 Total: -17.22 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -8.16 Total: -106.91 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.79 Total: 3.04 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.32 Total: 2.08 kcal Total: -66.05 -0.23 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.047 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds