Wall clock time and date at job start Tue Mar 31 2020 12:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48510 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47537 * 299.99589 * 3 2 1 6 6 H 1.48502 * 109.47339 * 60.00251 * 3 2 1 7 7 C 1.37878 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99807 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50417 * 60.07384 * 9 7 2 11 11 C 1.53120 * 109.50264 * 300.00113 * 9 7 2 12 12 C 1.53120 * 109.16058 * 182.40997 * 11 9 7 13 13 C 1.53037 * 109.28123 * 57.65060 * 12 11 9 14 14 N 1.46848 * 109.52196 * 300.82420 * 13 12 11 15 15 C 1.46896 * 110.99621 * 185.84079 * 14 13 12 16 16 C 1.50699 * 109.47176 * 66.04763 * 15 14 13 17 17 N 1.30968 * 126.43299 * 90.00043 * 16 15 14 18 18 C 1.35261 * 105.58606 * 179.97438 * 17 16 15 19 19 C 1.48232 * 126.42833 * 179.97438 * 18 17 16 20 20 C 1.39599 * 122.84601 * 179.97438 * 19 18 17 21 21 C 1.33157 * 113.73162 * 180.02562 * 20 19 18 22 22 S 1.75730 * 109.75263 * 0.02562 * 21 20 19 23 23 C 1.34457 * 122.84745 * 0.02562 * 19 18 17 24 24 N 1.30872 * 107.14661 * 0.21996 * 18 17 16 25 25 O 1.21296 * 110.07456 * 359.60958 * 24 18 17 26 26 C 1.46841 * 111.20217 * 61.74103 * 14 13 12 27 27 H 0.97005 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52682 * 62.49694 * 11 9 7 29 29 H 1.09005 * 109.57483 * 302.33841 * 11 9 7 30 30 H 1.09004 * 109.50095 * 297.70471 * 12 11 9 31 31 H 1.09001 * 109.50355 * 177.59542 * 12 11 9 32 32 H 1.08999 * 109.45819 * 180.80398 * 13 12 11 33 33 H 1.08998 * 109.46034 * 60.83701 * 13 12 11 34 34 H 1.08993 * 109.47410 * 306.04324 * 15 14 13 35 35 H 1.09004 * 109.46699 * 186.04389 * 15 14 13 36 36 H 1.07992 * 123.13516 * 359.97438 * 20 19 18 37 37 H 1.08001 * 125.12385 * 180.02562 * 21 20 19 38 38 H 1.07996 * 124.73948 * 0.24060 * 23 19 18 39 39 H 1.09008 * 109.45996 * 58.27215 * 26 14 13 40 40 H 1.08998 * 109.46587 * 178.24518 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5582 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0564 1.2418 14 7 1.5111 -4.9347 0.0275 15 6 2.4286 -6.0741 -0.1061 16 6 1.6345 -7.3346 -0.3329 17 7 1.2701 -7.8266 -1.4907 18 6 0.5837 -8.9567 -1.2056 19 6 -0.0391 -9.8790 -2.1848 20 6 -0.7328 -11.0296 -1.8059 21 6 -1.2172 -11.7257 -2.8325 22 16 -0.7994 -10.9276 -4.3413 23 6 0.0171 -9.6788 -3.5132 24 7 0.5680 -9.0803 0.0972 25 8 1.1704 -8.1608 0.6099 26 6 2.2449 -3.6629 0.0061 27 1 -0.4851 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2287 29 1 0.9899 -2.4814 2.1413 30 1 -0.9963 -4.0166 0.4024 31 1 -0.9415 -4.0155 2.1822 32 1 0.1876 -6.0213 1.2436 33 1 1.3358 -4.9815 2.1199 34 1 3.0178 -6.1749 0.8053 35 1 3.0946 -5.9070 -0.9527 36 1 -0.8637 -11.3279 -0.7763 37 1 -1.7819 -12.6427 -2.7503 38 1 0.5137 -8.8465 -3.9896 39 1 2.8791 -3.5947 0.8901 40 1 2.8642 -3.6158 -0.8896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:34 Heat of formation + Delta-G solvation = 102.187693 kcal Electronic energy + Delta-G solvation = -23746.821265 eV Core-core repulsion = 20270.400690 eV Total energy + Delta-G solvation = -3476.420575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.47652 -38.53802 -38.41106 -35.57622 -34.27034 -32.58524 -31.37896 -29.99093 -29.90434 -27.08858 -25.72732 -25.00289 -23.19942 -22.72989 -21.90836 -21.28695 -19.38839 -18.72083 -18.09888 -18.00193 -17.37793 -16.42918 -15.66684 -15.33829 -14.95665 -14.47851 -14.24044 -13.72671 -13.61851 -13.50856 -13.25985 -13.06016 -12.84199 -12.53230 -12.39050 -12.23902 -11.92918 -11.76735 -11.47015 -11.25445 -11.02393 -10.99115 -10.77125 -10.69778 -10.30963 -10.14212 -9.89863 -9.54539 -9.21153 -9.16030 -8.75759 -8.57945 -8.35034 -7.93745 -6.00550 -4.07196 0.48737 1.16915 1.27805 1.61938 1.82941 2.81150 2.93737 3.28544 3.37001 3.39861 3.52736 4.03348 4.29220 4.47317 4.66117 4.85774 5.08819 5.17804 5.27086 5.29837 5.39088 5.55142 5.61951 5.68726 5.73521 5.87571 5.96598 6.05331 6.06602 6.14166 6.26056 6.40958 6.62365 6.66896 6.84166 7.12201 7.25648 7.44227 7.58164 7.73208 8.02440 8.12795 8.16473 8.41953 8.96877 9.57552 11.05471 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002522 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.882461 B =11098.433493 C =11542.955750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.055 3.945 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.057 3.943 14 N -0.532 5.532 15 C 0.142 3.858 16 C 0.209 3.791 17 N -0.464 5.464 18 C 0.227 3.773 19 C -0.041 4.041 20 C -0.106 4.106 21 C -0.234 4.234 22 S 0.189 5.811 23 C -0.200 4.200 24 N -0.381 5.381 25 O 0.076 5.924 26 C 0.070 3.930 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.028 0.972 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -21.387 -3.843 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.070 4.070 14 N -0.259 5.259 15 C 0.012 3.988 16 C -0.013 4.013 17 N -0.197 5.197 18 C -0.045 4.045 19 C -0.056 4.056 20 C -0.136 4.136 21 C -0.369 4.369 22 S 0.454 5.546 23 C -0.340 4.340 24 N -0.089 5.089 25 O 0.016 5.984 26 C -0.056 4.056 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.046 0.954 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.025 -22.250 -5.771 23.009 hybrid contribution 1.278 1.419 2.373 3.046 sum 0.253 -20.831 -3.398 21.108 Atomic orbital electron populations 1.69898 1.05870 1.26306 1.50514 1.24935 0.94824 0.99018 0.95066 0.86562 0.80106 0.83901 0.77550 1.19820 1.21046 1.21111 1.21143 0.92879 0.90464 1.50884 0.92631 1.18683 0.92565 0.90072 0.95053 0.94579 1.21680 1.00153 0.94631 0.98508 1.21667 0.97054 0.96234 1.00445 1.22166 0.95913 0.99050 0.89915 1.62022 1.23351 1.01462 1.39028 1.20615 0.91750 0.82674 1.03793 1.28790 0.95274 0.95486 0.81731 1.72007 1.14829 1.07587 1.25262 1.23394 0.98676 0.93421 0.89006 1.16358 1.03758 0.95393 0.90137 1.20128 0.98658 0.93869 1.00977 1.25606 1.09616 1.06165 0.95494 1.83152 1.48248 1.14736 1.08500 1.25228 1.05984 1.05466 0.97288 1.74890 1.15210 1.08593 1.10171 1.85282 1.50120 1.26194 1.36770 1.22395 0.96644 0.87055 0.99491 0.93052 0.88924 0.94899 0.92123 0.93215 0.92766 0.94815 0.91285 0.86294 0.83366 0.81194 0.80519 0.95396 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.35 55.43 0.63 -24.21 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.32 2.26 -91.69 -0.21 1.11 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.55 5.02 -26.61 -0.13 -2.68 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C 0.06 0.98 5.31 -3.83 -0.02 0.96 16 14 N -0.53 -9.25 4.65 -236.12 -1.10 -10.34 16 15 C 0.14 1.94 5.59 -4.98 -0.03 1.92 16 16 C 0.21 3.11 7.06 -12.98 -0.09 3.02 16 17 N -0.46 -7.40 11.48 -9.86 -0.11 -7.51 16 18 C 0.23 3.48 7.88 -156.07 -1.23 2.25 16 19 C -0.04 -0.53 5.80 -106.62 -0.62 -1.15 16 20 C -0.11 -1.13 10.03 -40.84 -0.41 -1.54 16 21 C -0.23 -1.92 11.20 28.96 0.32 -1.60 16 22 S 0.19 1.51 23.09 -107.50 -2.48 -0.97 16 23 C -0.20 -2.21 10.67 29.40 0.31 -1.89 16 24 N -0.38 -5.92 12.11 30.99 0.38 -5.54 16 25 O 0.08 1.14 10.55 18.03 0.19 1.33 16 26 C 0.07 1.36 4.68 -3.84 -0.02 1.34 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 2.39 6.15 -51.93 -0.32 2.08 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.12 1.47 7.98 -51.93 -0.41 1.06 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -29.37 345.42 -10.24 -39.61 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.26 Total: -0.40 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.67 Total: -12.92 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.21 Total: -47.61 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.19 Total: 1.33 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.37 -10.24 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.801 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds