Wall clock time and date at job start Tue Mar 31 2020 12:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48510 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47537 * 299.99589 * 3 2 1 6 6 H 1.48502 * 109.47339 * 60.00251 * 3 2 1 7 7 C 1.37878 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99807 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50417 * 60.07384 * 9 7 2 11 11 C 1.53120 * 109.50264 * 300.00113 * 9 7 2 12 12 C 1.53120 * 109.16058 * 182.40997 * 11 9 7 13 13 C 1.53037 * 109.28123 * 57.65060 * 12 11 9 14 14 N 1.46848 * 109.52196 * 300.82420 * 13 12 11 15 15 C 1.46896 * 110.99621 * 185.84079 * 14 13 12 16 16 C 1.50699 * 109.47176 * 66.04763 * 15 14 13 17 17 N 1.30968 * 126.43299 * 90.00043 * 16 15 14 18 18 C 1.35261 * 105.58606 * 179.97438 * 17 16 15 19 19 C 1.48232 * 126.42833 * 179.97438 * 18 17 16 20 20 C 1.39599 * 122.84601 * 179.97438 * 19 18 17 21 21 C 1.33157 * 113.73162 * 180.02562 * 20 19 18 22 22 S 1.75730 * 109.75263 * 0.02562 * 21 20 19 23 23 C 1.34457 * 122.84745 * 0.02562 * 19 18 17 24 24 N 1.30872 * 107.14661 * 0.21996 * 18 17 16 25 25 O 1.21296 * 110.07456 * 359.60958 * 24 18 17 26 26 C 1.46841 * 111.20217 * 61.74103 * 14 13 12 27 27 H 0.97005 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52682 * 62.49694 * 11 9 7 29 29 H 1.09005 * 109.57483 * 302.33841 * 11 9 7 30 30 H 1.09004 * 109.50095 * 297.70471 * 12 11 9 31 31 H 1.09001 * 109.50355 * 177.59542 * 12 11 9 32 32 H 1.08999 * 109.45819 * 180.80398 * 13 12 11 33 33 H 1.08998 * 109.46034 * 60.83701 * 13 12 11 34 34 H 1.08993 * 109.47410 * 306.04324 * 15 14 13 35 35 H 1.09004 * 109.46699 * 186.04389 * 15 14 13 36 36 H 1.07992 * 123.13516 * 359.97438 * 20 19 18 37 37 H 1.08001 * 125.12385 * 180.02562 * 21 20 19 38 38 H 1.07996 * 124.73948 * 0.24060 * 23 19 18 39 39 H 1.09008 * 109.45996 * 58.27215 * 26 14 13 40 40 H 1.08998 * 109.46587 * 178.24518 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5582 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0564 1.2418 14 7 1.5111 -4.9347 0.0275 15 6 2.4286 -6.0741 -0.1061 16 6 1.6345 -7.3346 -0.3329 17 7 1.2701 -7.8266 -1.4907 18 6 0.5837 -8.9567 -1.2056 19 6 -0.0391 -9.8790 -2.1848 20 6 -0.7328 -11.0296 -1.8059 21 6 -1.2172 -11.7257 -2.8325 22 16 -0.7994 -10.9276 -4.3413 23 6 0.0171 -9.6788 -3.5132 24 7 0.5680 -9.0803 0.0972 25 8 1.1704 -8.1608 0.6099 26 6 2.2449 -3.6629 0.0061 27 1 -0.4851 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2287 29 1 0.9899 -2.4814 2.1413 30 1 -0.9963 -4.0166 0.4024 31 1 -0.9415 -4.0155 2.1822 32 1 0.1876 -6.0213 1.2436 33 1 1.3358 -4.9815 2.1199 34 1 3.0178 -6.1749 0.8053 35 1 3.0946 -5.9070 -0.9527 36 1 -0.8637 -11.3279 -0.7763 37 1 -1.7819 -12.6427 -2.7503 38 1 0.5137 -8.8465 -3.9896 39 1 2.8791 -3.5947 0.8901 40 1 2.8642 -3.6158 -0.8896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:33 Heat of formation + Delta-G solvation = 83.551180 kcal Electronic energy + Delta-G solvation = -23747.629405 eV Core-core repulsion = 20270.400690 eV Total energy + Delta-G solvation = -3477.228715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.61488 -39.93310 -39.32568 -36.73983 -35.84975 -34.17336 -32.81027 -31.67936 -30.74391 -28.37990 -26.95386 -26.66251 -24.42613 -23.86667 -23.33844 -22.72830 -20.40958 -20.25022 -19.28233 -18.88651 -18.40806 -18.29929 -16.89379 -16.53746 -16.33346 -16.19392 -15.50900 -15.02459 -14.80777 -14.57468 -14.45569 -14.34093 -13.95947 -13.94627 -13.65217 -13.53020 -13.33600 -12.90292 -12.85966 -12.75568 -12.58052 -12.47747 -12.17258 -11.94765 -11.86765 -11.72955 -11.42108 -11.38968 -10.89755 -10.64844 -10.36844 -9.94747 -9.35517 -9.28760 -8.05112 -6.18809 -0.39751 0.13764 0.57680 0.85827 0.89446 1.43309 1.45768 1.56242 1.69249 1.96181 2.45235 2.51219 2.97205 3.03652 3.23028 3.77871 3.97606 4.05757 4.12942 4.26296 4.32048 4.40004 4.45888 4.48933 4.59360 4.62244 4.70804 4.79987 4.87567 4.96166 4.99232 5.05275 5.17040 5.17222 5.26702 5.35698 5.51543 5.67396 5.89350 6.09724 6.11872 6.21060 6.44466 6.94904 7.04093 7.49545 8.99885 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002522 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.882461 B =11098.433493 C =11542.955750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.051 3.949 10 H -0.007 1.007 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.064 3.936 14 N -0.550 5.550 15 C 0.145 3.855 16 C 0.209 3.791 17 N -0.484 5.484 18 C 0.221 3.779 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.221 4.221 22 S 0.255 5.745 23 C -0.219 4.219 24 N -0.395 5.395 25 O 0.074 5.926 26 C 0.085 3.915 27 H 0.258 0.742 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.203 0.797 38 H 0.172 0.828 39 H 0.039 0.961 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -23.152 -4.099 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.032 3.968 10 H 0.011 0.989 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.063 4.063 14 N -0.276 5.276 15 C 0.016 3.984 16 C -0.012 4.012 17 N -0.218 5.218 18 C -0.050 4.050 19 C -0.089 4.089 20 C -0.159 4.159 21 C -0.356 4.356 22 S 0.520 5.480 23 C -0.359 4.359 24 N -0.104 5.104 25 O 0.016 5.984 26 C -0.041 4.041 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.220 0.780 38 H 0.189 0.811 39 H 0.057 0.943 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.174 -24.029 -6.023 24.773 hybrid contribution 0.952 1.892 2.337 3.154 sum 0.778 -22.137 -3.686 22.455 Atomic orbital electron populations 1.70056 1.07305 1.26888 1.51550 1.25731 0.95575 1.02411 0.94986 0.85574 0.79315 0.79854 0.77289 1.18712 1.21106 1.20931 1.21548 0.93265 0.91725 1.50193 0.92235 1.18605 0.93063 0.91531 0.93582 0.98876 1.21475 0.99275 0.95560 0.97912 1.21563 0.97453 0.95241 1.00520 1.22077 0.95522 0.98182 0.90546 1.61818 1.24450 1.01836 1.39525 1.20739 0.91037 0.80581 1.06015 1.28972 0.95002 0.95650 0.81581 1.72008 1.15530 1.08245 1.25999 1.23894 0.98235 0.93479 0.89407 1.16643 1.05468 0.96327 0.90424 1.20145 0.99981 0.94020 1.01730 1.26038 1.08035 1.06484 0.95054 1.82935 1.45810 1.12198 1.07034 1.25400 1.06506 1.06640 0.97332 1.74865 1.15983 1.09073 1.10461 1.85253 1.50179 1.26217 1.36711 1.22040 0.95317 0.86477 1.00289 0.93245 0.92550 0.94881 0.94120 0.91269 0.91776 0.93078 0.88070 0.84846 0.83539 0.78009 0.81079 0.94284 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 11.35 21.45 0.24 -52.79 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.49 2.26 -11.49 -0.03 2.47 16 10 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 11 C -0.10 -4.85 5.02 30.67 0.15 -4.69 16 12 C -0.11 -4.24 6.09 30.65 0.19 -4.05 16 13 C 0.06 2.10 5.31 86.33 0.46 2.56 16 14 N -0.55 -18.42 4.65 -900.95 -4.19 -22.60 16 15 C 0.15 3.68 5.59 85.56 0.48 4.16 16 16 C 0.21 6.02 7.06 88.35 0.62 6.64 16 17 N -0.48 -15.35 11.48 -302.33 -3.47 -18.82 16 18 C 0.22 6.79 7.88 137.19 1.08 7.87 16 19 C -0.07 -1.84 5.80 -21.16 -0.12 -1.97 16 20 C -0.13 -2.64 10.03 21.45 0.22 -2.42 16 21 C -0.22 -3.06 11.20 66.68 0.75 -2.32 16 22 S 0.25 3.46 23.09 -56.49 -1.30 2.16 16 23 C -0.22 -4.68 10.67 66.95 0.71 -3.97 16 24 N -0.39 -12.19 12.11 -58.93 -0.71 -12.90 16 25 O 0.07 2.17 10.55 74.58 0.79 2.96 16 26 C 0.09 3.23 4.68 86.33 0.40 3.63 16 27 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.06 3.03 6.15 -2.39 -0.01 3.02 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 1.99 6.54 -2.39 -0.02 1.98 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.13 3.00 7.98 -2.38 -0.02 2.99 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 40 H 0.07 2.63 8.01 -2.39 -0.02 2.62 16 Total: -1.00 -65.53 345.42 0.02 -65.51 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.05 Total: 10.46 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 5.58 Total: -18.91 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -8.12 Total: -107.11 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.79 Total: 2.96 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.30 Total: 2.16 kcal Total: -65.53 0.02 -65.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.063 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds