Wall clock time and date at job start Tue Mar 31 2020 12:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50359 * 299.92133 * 9 7 2 11 11 C 1.53122 * 109.50127 * 59.99918 * 9 7 2 12 12 C 1.53114 * 109.15993 * 177.59814 * 11 9 7 13 13 C 1.53044 * 109.27620 * 302.34480 * 12 11 9 14 14 N 1.46844 * 109.52351 * 59.18200 * 13 12 11 15 15 C 1.46900 * 110.99734 * 174.16205 * 14 13 12 16 16 C 1.50697 * 109.47358 * 293.94784 * 15 14 13 17 17 N 1.30040 * 126.17592 * 269.69248 * 16 15 14 18 18 O 1.21279 * 110.53579 * 179.85930 * 17 16 15 19 19 C 1.34266 * 109.68685 * 0.40449 * 18 17 16 20 20 C 1.47416 * 126.69651 * 179.74908 * 19 18 17 21 21 C 1.44335 * 123.33102 * 359.72736 * 20 19 18 22 22 C 1.32926 * 112.98893 * 179.83307 * 21 20 19 23 23 S 1.75549 * 110.34521 * 0.41982 * 22 21 20 24 24 C 1.34825 * 123.32619 * 180.02562 * 20 19 18 25 25 N 1.32327 * 106.60362 * 359.75293 * 19 18 17 26 26 C 1.46847 * 111.19552 * 298.25380 * 14 13 12 27 27 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.52191 * 297.49898 * 11 9 7 29 29 H 1.08993 * 109.52467 * 57.62719 * 11 9 7 30 30 H 1.09005 * 109.50655 * 62.28356 * 12 11 9 31 31 H 1.08999 * 109.50829 * 182.36016 * 12 11 9 32 32 H 1.09006 * 109.46027 * 179.19321 * 13 12 11 33 33 H 1.08997 * 109.45733 * 299.17024 * 13 12 11 34 34 H 1.09006 * 109.47120 * 53.95249 * 15 14 13 35 35 H 1.09003 * 109.46729 * 173.94917 * 15 14 13 36 36 H 1.07999 * 123.50474 * 0.04411 * 21 20 19 37 37 H 1.07998 * 124.83077 * 180.14435 * 22 21 20 38 38 H 1.07999 * 124.52209 * 359.97438 * 24 20 19 39 39 H 1.09000 * 109.46702 * 301.73463 * 26 14 13 40 40 H 1.09003 * 109.46567 * 181.76031 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8759 -0.6809 -0.8900 11 6 4.0223 -0.4731 1.2507 12 6 5.5522 -0.5300 1.2741 13 6 6.0040 -1.9918 1.2413 14 7 5.4909 -2.6370 0.0261 15 6 6.0190 -4.0011 -0.1087 16 6 7.5078 -3.9434 -0.3349 17 7 8.1071 -3.8788 -1.4872 18 8 9.3103 -3.8423 -1.3393 19 6 9.6070 -3.8904 -0.0308 20 6 10.9538 -3.8742 0.5684 21 6 12.1674 -3.8074 -0.2101 22 6 13.2652 -3.8010 0.5394 23 16 12.8430 -3.8894 2.2411 24 6 11.1739 -3.9262 1.8976 25 7 8.4544 -3.9553 0.6161 26 6 4.0226 -2.6366 0.0043 27 1 -0.4850 0.8400 -0.0004 28 1 3.6967 0.5670 1.2301 29 1 3.6251 -0.9616 2.1404 30 1 5.9492 -0.0068 0.4040 31 1 5.9203 -0.0549 2.1834 32 1 7.0932 -2.0354 1.2434 33 1 5.6181 -2.5109 2.1186 34 1 5.8113 -4.5628 0.8021 35 1 5.5415 -4.4934 -0.9560 36 1 12.1818 -3.7636 -1.2891 37 1 14.2736 -3.7530 0.1558 38 1 10.3964 -3.9836 2.6449 39 1 3.6461 -3.1526 0.8875 40 1 3.6725 -3.1485 -0.8921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:23 Heat of formation + Delta-G solvation = 88.487310 kcal Electronic energy + Delta-G solvation = -23866.262922 eV Core-core repulsion = 20389.248255 eV Total energy + Delta-G solvation = -3477.014668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.60718 -40.16156 -38.82789 -37.20215 -35.53938 -34.20021 -33.22494 -32.08877 -30.62519 -28.81134 -26.93694 -26.46990 -24.75228 -23.77380 -23.39758 -22.55141 -20.60103 -20.41137 -19.26886 -19.10590 -18.81085 -17.94172 -17.29868 -17.05074 -16.24205 -16.11201 -15.52263 -15.38835 -14.87260 -14.75903 -14.48016 -14.34035 -14.04591 -13.91803 -13.83387 -13.69915 -13.34287 -13.03590 -12.95474 -12.82405 -12.71284 -12.32110 -12.19816 -11.95648 -11.85131 -11.82827 -11.55686 -11.41171 -11.04959 -10.89403 -10.64351 -9.97817 -9.40754 -9.26860 -8.31652 -6.34810 -0.54893 0.36659 0.53287 0.89792 0.94006 1.27769 1.34855 1.45435 1.78928 1.86895 2.31121 2.42525 2.89754 3.01459 3.04142 3.80233 3.86621 3.95365 3.99400 4.12495 4.26154 4.35857 4.38211 4.40695 4.50692 4.55037 4.63894 4.67335 4.73066 4.77491 4.88549 4.95226 4.96928 5.06690 5.14130 5.15593 5.23678 5.38132 5.58020 5.67236 6.00275 6.02567 6.30179 6.71870 7.09004 7.30795 8.84956 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.002674 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.444093 B =10467.917079 C =10905.964085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.039 0.961 9 C 0.020 3.980 10 H 0.021 0.979 11 C -0.121 4.121 12 C -0.113 4.113 13 C 0.067 3.933 14 N -0.547 5.547 15 C 0.144 3.856 16 C 0.185 3.815 17 N -0.392 5.392 18 O 0.084 5.916 19 C 0.248 3.752 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.221 4.221 23 S 0.257 5.743 24 C -0.195 4.195 25 N -0.488 5.488 26 C 0.091 3.909 27 H 0.266 0.734 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.165 0.835 37 H 0.204 0.796 38 H 0.177 0.823 39 H 0.032 0.968 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.505 -8.983 5.091 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.227 1.227 6 H -0.178 1.178 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.001 3.999 10 H 0.039 0.961 11 C -0.158 4.158 12 C -0.150 4.150 13 C -0.060 4.060 14 N -0.273 5.273 15 C 0.015 3.985 16 C -0.089 4.089 17 N -0.100 5.100 18 O 0.024 5.976 19 C 0.029 3.971 20 C -0.101 4.101 21 C -0.148 4.148 22 C -0.356 4.356 23 S 0.522 5.478 24 C -0.336 4.336 25 N -0.223 5.223 26 C -0.036 4.036 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.183 0.817 37 H 0.221 0.779 38 H 0.194 0.806 39 H 0.050 0.950 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 32.627 -8.677 5.600 34.222 hybrid contribution -1.785 0.403 -0.866 2.024 sum 30.842 -8.274 4.734 32.282 Atomic orbital electron populations 1.70032 1.08034 1.27980 1.52768 1.25780 0.95361 1.02738 0.94265 0.85850 0.78916 0.79031 0.78655 1.19106 1.22695 1.17810 1.21274 0.91063 0.93197 1.49946 0.94284 1.19070 0.93213 0.93344 0.94263 0.96070 1.21922 0.95135 0.99080 0.99696 1.21612 0.95290 0.96132 1.02001 1.22024 0.99327 0.94637 0.90031 1.61856 1.09369 1.16587 1.39504 1.20299 0.83216 0.91239 1.03705 1.25628 0.99623 0.99953 0.83686 1.74605 0.89692 1.21448 1.24209 1.85380 1.18101 1.65912 1.28240 1.26245 0.95492 0.95020 0.80306 1.17455 0.86101 1.13903 0.92605 1.21324 0.88886 1.02564 1.02017 1.25968 1.04078 1.08851 0.96666 1.83133 0.92739 1.66540 1.05355 1.25508 1.05339 1.03943 0.98784 1.72156 0.97484 1.21878 1.30764 1.21833 0.83895 0.97782 1.00130 0.92526 0.94572 0.92553 0.92658 0.89794 0.90771 0.94156 0.90382 0.87442 0.81722 0.77892 0.80573 0.94987 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.02 0.93 5.45 84.65 0.46 1.39 16 3 Si 0.95 46.46 24.35 68.60 1.67 48.13 16 4 H -0.27 -12.28 6.89 99.48 0.69 -11.59 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.25 -11.92 6.53 99.48 0.65 -11.27 16 7 C -0.52 -29.73 9.15 25.60 0.23 -29.50 16 8 H 0.04 2.45 7.99 -2.92 -0.02 2.42 16 9 C 0.02 0.97 1.85 -11.48 -0.02 0.95 16 10 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 11 C -0.12 -5.17 4.73 30.67 0.15 -5.03 16 12 C -0.11 -3.94 6.09 30.65 0.19 -3.76 16 13 C 0.07 2.22 5.31 86.33 0.46 2.68 16 14 N -0.55 -19.44 4.65 -900.90 -4.19 -23.63 16 15 C 0.14 4.36 5.59 85.56 0.48 4.84 16 16 C 0.18 5.65 6.81 138.53 0.94 6.59 16 17 N -0.39 -12.37 12.14 -58.38 -0.71 -13.08 16 18 O 0.08 2.28 11.33 69.03 0.78 3.06 16 19 C 0.25 6.06 8.14 87.15 0.71 6.77 16 20 C -0.08 -1.45 5.94 -20.09 -0.12 -1.57 16 21 C -0.12 -1.42 10.37 22.65 0.23 -1.18 16 22 C -0.22 -1.53 11.14 66.65 0.74 -0.79 16 23 S 0.26 1.89 23.03 -56.49 -1.30 0.59 16 24 C -0.20 -2.72 10.67 67.04 0.72 -2.01 16 25 N -0.49 -13.69 10.63 -302.57 -3.22 -16.90 16 26 C 0.09 3.67 4.68 86.33 0.40 4.08 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.04 1.62 3.35 -2.38 -0.01 1.61 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.35 6.45 -2.38 -0.02 2.33 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 2.13 8.12 -2.38 -0.02 2.12 16 35 H 0.11 3.07 7.98 -2.39 -0.02 3.05 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.20 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 2.77 8.01 -2.39 -0.02 2.75 16 Total: -1.00 -70.81 338.83 -0.10 -70.91 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.98 Total: 7.05 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 5.57 Total: -16.52 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -7.81 Total: -113.22 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.78 Total: 3.06 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.30 Total: 0.59 kcal Total: -70.81 -0.10 -70.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.399 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds