Wall clock time and date at job start Tue Mar 31 2020 12:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44597 * 123.57798 * 83.68953 * 3 2 1 5 5 C 1.32620 * 113.15208 * 179.97438 * 4 3 2 6 6 S 1.75469 * 110.77471 * 359.74007 * 5 4 3 7 7 C 1.36984 * 123.58102 * 263.68120 * 3 2 1 8 8 N 1.38797 * 124.64577 * 0.02562 * 7 3 2 9 9 C 1.34780 * 119.99991 * 179.97438 * 8 7 3 10 10 O 1.21288 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00122 * 179.97438 * 9 8 7 12 12 N 1.46896 * 109.47474 * 179.97438 * 11 9 8 13 13 C 1.46846 * 110.99998 * 294.21414 * 12 11 9 14 14 C 1.53042 * 109.52384 * 174.15789 * 13 12 11 15 15 C 1.53120 * 109.27679 * 59.17688 * 14 13 12 16 16 C 1.53114 * 109.16161 * 302.34397 * 15 14 13 17 17 H 1.09004 * 109.50600 * 297.71890 * 16 15 14 18 18 C 1.50704 * 109.50447 * 177.59739 * 16 15 14 19 19 H 1.08002 * 119.99914 * 240.19974 * 18 16 15 20 20 C 1.37871 * 119.99709 * 60.19866 * 18 16 15 21 21 N 1.31507 * 120.00312 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99691 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47211 * 60.00071 * 22 20 18 24 24 H 1.48497 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47261 * 299.99881 * 22 20 18 26 26 C 1.46850 * 111.00472 * 170.00002 * 12 11 9 27 27 H 1.08007 * 123.42248 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.61212 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00235 * 359.97438 * 8 7 3 30 30 H 1.09002 * 109.47120 * 59.99722 * 11 9 8 31 31 H 1.09004 * 109.46990 * 299.99968 * 11 9 8 32 32 H 1.08993 * 109.46639 * 54.13954 * 13 12 11 33 33 H 1.09010 * 109.45973 * 294.17120 * 13 12 11 34 34 H 1.08998 * 109.50041 * 299.23667 * 14 13 12 35 35 H 1.09005 * 109.50105 * 179.11475 * 14 13 12 36 36 H 1.08995 * 109.52336 * 182.44133 * 15 14 13 37 37 H 1.09001 * 109.57675 * 62.28483 * 15 14 13 38 38 H 0.97003 * 120.00453 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.45831 * 65.81919 * 26 12 11 40 40 H 1.08998 * 109.45719 * 305.85769 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3677 -0.1314 -1.1974 5 6 4.6720 -0.1039 -0.9589 6 16 4.9872 0.0939 0.7559 7 6 3.3256 0.1266 1.1343 8 7 2.8107 0.2677 2.4155 9 6 3.6446 0.3841 3.4679 10 8 4.8450 0.3651 3.2954 11 6 3.0856 0.5379 4.8588 12 7 4.1900 0.6439 5.8216 13 6 4.9560 -0.6075 5.8835 14 6 6.1793 -0.4144 6.7825 15 6 5.7173 -0.0070 8.1843 16 6 4.8814 1.2722 8.0860 17 1 5.4977 2.0802 7.6917 18 6 4.3733 1.6476 9.4542 19 1 3.3107 1.7077 9.6379 20 6 5.2649 1.9143 10.4714 21 7 6.5587 1.8406 10.2480 22 14 4.6350 2.3789 12.1676 23 1 3.7980 1.2758 12.7041 24 1 5.7861 2.6131 13.0760 25 1 3.8201 3.6166 12.0711 26 6 3.6957 1.0302 7.1493 27 1 2.9458 -0.2405 -2.1856 28 1 5.4363 -0.1870 -1.7175 29 1 1.8506 0.2825 2.5535 30 1 2.4736 -0.3305 5.1025 31 1 2.4736 1.4387 4.9069 32 1 5.2821 -0.8838 4.8809 33 1 4.3267 -1.3986 6.2915 34 1 6.8160 0.3671 6.3677 35 1 6.7391 -1.3479 6.8408 36 1 6.5867 0.1738 8.8163 37 1 5.1129 -0.8048 8.6159 38 1 7.1861 2.0286 10.9635 39 1 3.0724 0.2314 7.5512 40 1 3.1065 1.9433 7.0658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:58 Heat of formation + Delta-G solvation = 30.827565 kcal Electronic energy + Delta-G solvation = -23619.158281 eV Core-core repulsion = 20139.643299 eV Total energy + Delta-G solvation = -3479.514982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74030 -38.63034 -37.77849 -36.14793 -34.96950 -33.81070 -31.90883 -29.95336 -29.62247 -27.34369 -24.97861 -24.91229 -22.54911 -21.76753 -21.55549 -20.75651 -19.18132 -18.72213 -17.86888 -16.48966 -16.30878 -16.04039 -15.60865 -15.00062 -14.70094 -14.56911 -14.52834 -14.32570 -13.85854 -13.48292 -13.27942 -13.06131 -12.94761 -12.72888 -12.49452 -12.27321 -12.19963 -11.88086 -11.48863 -11.31015 -11.21820 -10.95539 -10.75013 -10.69778 -10.21090 -9.95241 -9.86841 -9.48574 -9.08726 -8.74869 -8.70446 -8.44930 -8.32469 -7.85491 -5.99802 -4.06761 0.42817 0.97320 1.69513 1.71263 2.25173 2.42866 2.45587 3.23540 3.30220 3.35562 3.37286 3.83420 4.25361 4.44558 4.46451 4.64621 4.88943 5.13652 5.21574 5.30330 5.37565 5.55341 5.69924 5.77449 5.84264 5.88944 6.05902 6.22263 6.28035 6.45577 6.61148 6.69357 6.73862 6.88586 7.17843 7.27734 7.30271 7.51464 7.56318 7.67117 7.74221 8.04179 8.14622 8.43167 8.96884 9.57737 11.06092 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002642 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.774528 B =10595.819775 C =11311.090345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.278 3.722 3 C -0.138 4.138 4 C -0.071 4.071 5 C -0.290 4.290 6 S 0.328 5.672 7 C 0.071 3.929 8 N -0.639 5.639 9 C 0.508 3.492 10 O -0.470 6.470 11 C 0.041 3.959 12 N -0.521 5.521 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.112 4.112 16 C 0.057 3.943 17 H 0.036 0.964 18 C -0.518 4.518 19 H 0.053 0.947 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.068 3.932 27 H 0.148 0.852 28 H 0.171 0.829 29 H 0.419 0.581 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.023 0.977 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -5.292 -20.337 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.037 4.037 3 C -0.159 4.159 4 C -0.101 4.101 5 C -0.425 4.425 6 S 0.589 5.411 7 C -0.152 4.152 8 N -0.284 5.284 9 C 0.295 3.705 10 O -0.341 6.341 11 C -0.090 4.090 12 N -0.246 5.246 13 C -0.071 4.071 14 C -0.152 4.152 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.054 0.946 18 C -0.557 4.557 19 H 0.071 0.929 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.058 4.058 27 H 0.165 0.835 28 H 0.188 0.812 29 H 0.256 0.744 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.715 -4.797 -19.554 20.316 hybrid contribution -2.495 -0.494 0.334 2.566 sum -5.210 -5.291 -19.220 20.605 Atomic orbital electron populations 1.81292 1.11656 1.11127 1.06788 1.24956 0.91709 0.92910 0.94122 1.15989 0.85455 1.22116 0.92359 1.20594 0.91820 1.00773 0.96952 1.26005 1.00153 1.12815 1.03571 1.84626 0.94328 1.66448 0.95722 1.22204 1.02184 1.03042 0.87732 1.43209 1.11722 1.70509 1.02932 1.21544 0.86896 0.75135 0.86890 1.90629 1.14514 1.45434 1.83539 1.21907 0.95271 1.03409 0.88445 1.61796 1.20706 1.33183 1.08897 1.22229 0.95763 0.88745 1.00344 1.21626 0.95907 1.00081 0.97539 1.21677 1.02191 0.97651 0.93505 1.18652 0.90998 0.94365 0.92184 0.94561 1.21077 0.92722 1.46914 0.94943 0.92885 1.24923 0.94863 0.95289 0.98672 1.69877 1.00904 1.48964 1.32763 0.86688 0.78280 0.78976 0.84196 1.20399 1.21294 1.20303 1.22402 0.99410 0.98197 0.85794 0.83460 0.81174 0.74415 0.91646 0.87224 0.90761 0.96231 0.91818 0.93479 0.89055 0.95182 0.92926 0.95888 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.39 18.54 41.84 0.78 -4.61 16 2 C 0.28 2.94 14.98 -22.47 -0.34 2.61 16 3 C -0.14 -1.27 5.88 -105.92 -0.62 -1.89 16 4 C -0.07 -0.52 10.35 -38.98 -0.40 -0.93 16 5 C -0.29 -1.97 11.10 28.83 0.32 -1.65 16 6 S 0.33 3.00 19.96 -107.50 -2.15 0.86 16 7 C 0.07 0.69 6.98 -14.85 -0.10 0.59 16 8 N -0.64 -6.12 5.37 -11.61 -0.06 -6.19 16 9 C 0.51 6.11 7.46 -10.99 -0.08 6.03 16 10 O -0.47 -6.87 11.75 5.55 0.07 -6.80 16 11 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 12 N -0.52 -8.92 4.40 -236.12 -1.04 -9.96 16 13 C 0.06 0.97 5.10 -3.83 -0.02 0.95 16 14 C -0.11 -2.21 6.09 -26.65 -0.16 -2.37 16 15 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 16 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 17 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.52 -13.75 8.56 -34.44 -0.29 -14.05 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 20 C 0.06 1.74 5.30 -17.83 -0.09 1.64 16 21 N -0.89 -24.89 11.36 55.43 0.63 -24.26 16 22 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.07 1.34 4.68 -3.83 -0.02 1.32 16 27 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 28 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.42 3.18 8.15 -40.82 -0.33 2.85 16 30 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.11 1.16 7.99 -51.93 -0.41 0.75 16 32 H 0.07 1.21 5.78 -51.93 -0.30 0.91 16 33 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -30.26 346.71 -8.89 -39.15 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.13 Total: -0.41 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.19 Total: -8.82 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.30 Total: -45.02 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.15 Total: 0.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.26 -8.89 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.977 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds