Wall clock time and date at job start Tue Mar 31 2020 12:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44597 * 123.57798 * 83.68953 * 3 2 1 5 5 C 1.32620 * 113.15208 * 179.97438 * 4 3 2 6 6 S 1.75469 * 110.77471 * 359.74007 * 5 4 3 7 7 C 1.36984 * 123.58102 * 263.68120 * 3 2 1 8 8 N 1.38797 * 124.64577 * 0.02562 * 7 3 2 9 9 C 1.34780 * 119.99991 * 179.97438 * 8 7 3 10 10 O 1.21288 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00122 * 179.97438 * 9 8 7 12 12 N 1.46896 * 109.47474 * 179.97438 * 11 9 8 13 13 C 1.46846 * 110.99998 * 294.21414 * 12 11 9 14 14 C 1.53042 * 109.52384 * 174.15789 * 13 12 11 15 15 C 1.53120 * 109.27679 * 59.17688 * 14 13 12 16 16 C 1.53114 * 109.16161 * 302.34397 * 15 14 13 17 17 H 1.09004 * 109.50600 * 297.71890 * 16 15 14 18 18 C 1.50704 * 109.50447 * 177.59739 * 16 15 14 19 19 H 1.08002 * 119.99914 * 240.19974 * 18 16 15 20 20 C 1.37871 * 119.99709 * 60.19866 * 18 16 15 21 21 N 1.31507 * 120.00312 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99691 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47211 * 60.00071 * 22 20 18 24 24 H 1.48497 * 109.46950 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47261 * 299.99881 * 22 20 18 26 26 C 1.46850 * 111.00472 * 170.00002 * 12 11 9 27 27 H 1.08007 * 123.42248 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.61212 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00235 * 359.97438 * 8 7 3 30 30 H 1.09002 * 109.47120 * 59.99722 * 11 9 8 31 31 H 1.09004 * 109.46990 * 299.99968 * 11 9 8 32 32 H 1.08993 * 109.46639 * 54.13954 * 13 12 11 33 33 H 1.09010 * 109.45973 * 294.17120 * 13 12 11 34 34 H 1.08998 * 109.50041 * 299.23667 * 14 13 12 35 35 H 1.09005 * 109.50105 * 179.11475 * 14 13 12 36 36 H 1.08995 * 109.52336 * 182.44133 * 15 14 13 37 37 H 1.09001 * 109.57675 * 62.28483 * 15 14 13 38 38 H 0.97003 * 120.00453 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.45831 * 65.81919 * 26 12 11 40 40 H 1.08998 * 109.45719 * 305.85769 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3677 -0.1314 -1.1974 5 6 4.6720 -0.1039 -0.9589 6 16 4.9872 0.0939 0.7559 7 6 3.3256 0.1266 1.1343 8 7 2.8107 0.2677 2.4155 9 6 3.6446 0.3841 3.4679 10 8 4.8450 0.3651 3.2954 11 6 3.0856 0.5379 4.8588 12 7 4.1900 0.6439 5.8216 13 6 4.9560 -0.6075 5.8835 14 6 6.1793 -0.4144 6.7825 15 6 5.7173 -0.0070 8.1843 16 6 4.8814 1.2722 8.0860 17 1 5.4977 2.0802 7.6917 18 6 4.3733 1.6476 9.4542 19 1 3.3107 1.7077 9.6379 20 6 5.2649 1.9143 10.4714 21 7 6.5587 1.8406 10.2480 22 14 4.6350 2.3789 12.1676 23 1 3.7980 1.2758 12.7041 24 1 5.7861 2.6131 13.0760 25 1 3.8201 3.6166 12.0711 26 6 3.6957 1.0302 7.1493 27 1 2.9458 -0.2405 -2.1856 28 1 5.4363 -0.1870 -1.7175 29 1 1.8506 0.2825 2.5535 30 1 2.4736 -0.3305 5.1025 31 1 2.4736 1.4387 4.9069 32 1 5.2821 -0.8838 4.8809 33 1 4.3267 -1.3986 6.2915 34 1 6.8160 0.3671 6.3677 35 1 6.7391 -1.3479 6.8408 36 1 6.5867 0.1738 8.8163 37 1 5.1129 -0.8048 8.6159 38 1 7.1861 2.0286 10.9635 39 1 3.0724 0.2314 7.5512 40 1 3.1065 1.9433 7.0658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:57 Heat of formation + Delta-G solvation = 11.827074 kcal Electronic energy + Delta-G solvation = -23619.982204 eV Core-core repulsion = 20139.643299 eV Total energy + Delta-G solvation = -3480.338905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66398 -39.70273 -38.93627 -37.00252 -35.78827 -35.51522 -33.58030 -31.66037 -30.48886 -28.42218 -26.89143 -25.74029 -23.89057 -23.25574 -22.53206 -21.61608 -20.38741 -19.94338 -18.78910 -18.39190 -17.15133 -16.96243 -16.85953 -16.32198 -16.05815 -15.66369 -15.49958 -15.16355 -15.06521 -14.80496 -14.48022 -14.29384 -14.24058 -13.88264 -13.71450 -13.69118 -13.28223 -12.91581 -12.83782 -12.79122 -12.57128 -12.52316 -12.08939 -11.99678 -11.73699 -11.69362 -11.39089 -11.03715 -10.68738 -10.63702 -10.32758 -9.39174 -9.21376 -9.12241 -8.05400 -6.19733 -0.31328 0.29298 1.05998 1.08961 1.37121 1.43885 1.44681 1.52105 1.61361 1.65225 2.44758 2.45755 3.03744 3.08306 3.22011 3.54952 3.99830 4.12814 4.23940 4.26681 4.31537 4.35775 4.50168 4.63743 4.75714 4.80635 4.90157 4.95140 4.99456 5.14080 5.19703 5.24032 5.31353 5.41717 5.53320 5.66121 5.83298 5.96965 6.11823 6.22147 6.24640 6.45417 6.46462 6.74437 6.93820 7.48421 8.99142 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002642 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.774528 B =10595.819775 C =11311.090345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.297 3.703 3 C -0.135 4.135 4 C -0.077 4.077 5 C -0.268 4.268 6 S 0.300 5.700 7 C 0.056 3.944 8 N -0.629 5.629 9 C 0.513 3.487 10 O -0.500 6.500 11 C 0.040 3.960 12 N -0.538 5.538 13 C 0.065 3.935 14 C -0.107 4.107 15 C -0.104 4.104 16 C 0.053 3.947 17 H -0.005 1.005 18 C -0.534 4.534 19 H 0.056 0.944 20 C 0.013 3.987 21 N -0.917 5.917 22 Si 0.953 3.047 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.083 3.917 27 H 0.172 0.828 28 H 0.200 0.800 29 H 0.428 0.572 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.028 0.972 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -5.968 -21.990 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.018 4.018 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.403 4.403 6 S 0.562 5.438 7 C -0.166 4.166 8 N -0.274 5.274 9 C 0.301 3.699 10 O -0.374 6.374 11 C -0.091 4.091 12 N -0.263 5.263 13 C -0.062 4.062 14 C -0.145 4.145 15 C -0.143 4.143 16 C 0.034 3.966 17 H 0.013 0.987 18 C -0.573 4.573 19 H 0.075 0.925 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.779 3.221 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.196 1.196 26 C -0.044 4.044 27 H 0.189 0.811 28 H 0.217 0.783 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.056 -5.477 -21.239 22.306 hybrid contribution -2.053 -0.277 0.736 2.199 sum -6.110 -5.754 -20.503 22.154 Atomic orbital electron populations 1.81314 1.12706 1.12451 1.08008 1.25088 0.91789 0.91902 0.93023 1.16183 0.84760 1.21755 0.93025 1.20860 0.91753 1.00669 0.97268 1.26236 1.00651 1.11068 1.02377 1.84785 0.94498 1.66581 0.97982 1.22292 1.02427 1.04176 0.87698 1.42947 1.11921 1.69908 1.02583 1.21349 0.86574 0.74846 0.87140 1.90635 1.15689 1.47041 1.84078 1.22000 0.94058 1.05629 0.87401 1.61588 1.22851 1.33569 1.08305 1.22122 0.94753 0.89071 1.00279 1.21525 0.97158 1.00201 0.95647 1.21479 1.00499 0.97115 0.95172 1.18575 0.92361 0.93342 0.92353 0.98712 1.21503 0.92944 1.46583 0.96274 0.92546 1.25724 0.95040 0.95429 1.02392 1.70039 1.01985 1.49904 1.33671 0.85693 0.77714 0.78920 0.79786 1.19614 1.21300 1.19607 1.22035 0.97142 0.98779 0.86430 0.81113 0.78335 0.73307 0.89049 0.85228 0.89476 0.95230 0.93656 0.91633 0.92634 0.95558 0.93152 0.95423 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.06 18.54 19.00 0.35 -10.70 16 2 C 0.30 5.75 14.98 88.33 1.32 7.07 16 3 C -0.14 -2.19 5.88 -20.71 -0.12 -2.31 16 4 C -0.08 -0.89 10.35 22.73 0.24 -0.65 16 5 C -0.27 -2.83 11.10 66.66 0.74 -2.09 16 6 S 0.30 5.02 19.96 -56.49 -1.13 3.89 16 7 C 0.06 0.99 6.98 83.29 0.58 1.57 16 8 N -0.63 -10.86 5.37 -309.04 -1.66 -12.52 16 9 C 0.51 11.44 7.46 87.65 0.65 12.10 16 10 O -0.50 -14.11 11.75 -3.05 -0.04 -14.14 16 11 C 0.04 0.89 5.45 85.56 0.47 1.36 16 12 N -0.54 -17.83 4.40 -900.94 -3.96 -21.79 16 13 C 0.07 2.15 5.10 86.33 0.44 2.59 16 14 C -0.11 -4.20 6.09 30.65 0.19 -4.02 16 15 C -0.10 -4.96 5.03 30.67 0.15 -4.80 16 16 C 0.05 2.60 2.26 -11.49 -0.03 2.58 16 17 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 18 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 19 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 20 C 0.01 0.71 5.30 84.65 0.45 1.16 16 21 N -0.92 -53.20 11.36 21.44 0.24 -52.95 16 22 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C 0.08 3.21 4.68 86.32 0.40 3.61 16 27 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 28 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.43 5.60 8.15 -92.71 -0.76 4.85 16 30 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.13 2.39 7.99 -2.39 -0.02 2.37 16 32 H 0.09 2.71 5.78 -2.39 -0.01 2.70 16 33 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.06 3.02 6.16 -2.39 -0.01 3.01 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 2.52 8.02 -2.39 -0.02 2.50 16 Total: -1.00 -67.28 346.71 1.87 -65.41 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.32 Total: 8.09 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.71 Total: -10.44 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -5.02 Total: -97.96 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.04 Total: -14.14 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.13 Total: 3.89 kcal Total: -67.28 1.87 -65.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.242 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds