Wall clock time and date at job start Tue Mar 31 2020 12:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99741 * 2 1 4 4 H 1.48505 * 109.47013 * 239.99580 * 3 2 1 5 5 H 1.48493 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47103 * 119.99863 * 3 2 1 7 7 C 1.37874 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50312 * 300.07860 * 9 7 2 11 11 C 1.53127 * 109.50107 * 60.19863 * 9 7 2 12 12 C 1.53114 * 109.15797 * 177.59422 * 11 9 7 13 13 C 1.53035 * 109.28381 * 302.34429 * 12 11 9 14 14 N 1.46854 * 109.52269 * 59.18088 * 13 12 11 15 15 C 1.46894 * 111.00302 * 174.16729 * 14 13 12 16 16 C 1.50705 * 109.46495 * 294.20781 * 15 14 13 17 17 C 1.37877 * 120.25874 * 114.98157 * 16 15 14 18 18 C 1.39667 * 118.81112 * 180.02562 * 17 16 15 19 19 O 1.22106 * 120.19494 * 180.02562 * 18 17 16 20 20 N 1.36336 * 119.60245 * 359.97438 * 18 17 16 21 21 C 1.37165 * 127.31331 * 179.97438 * 20 18 17 22 22 C 1.30894 * 116.61715 * 180.02562 * 21 20 18 23 23 S 1.75729 * 109.69464 * 359.97438 * 22 21 20 24 24 C 1.35370 * 118.86279 * 359.97438 * 20 18 17 25 25 N 1.32420 * 120.26261 * 294.99465 * 16 15 14 26 26 C 1.46853 * 111.19435 * 298.26411 * 14 13 12 27 27 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.51948 * 297.49692 * 11 9 7 29 29 H 1.08993 * 109.51940 * 57.69032 * 11 9 7 30 30 H 1.09007 * 109.50769 * 62.28957 * 12 11 9 31 31 H 1.09002 * 109.49916 * 182.40276 * 12 11 9 32 32 H 1.09006 * 109.46331 * 299.17043 * 13 12 11 33 33 H 1.09000 * 109.46560 * 179.19562 * 13 12 11 34 34 H 1.08998 * 109.47552 * 174.21097 * 15 14 13 35 35 H 1.08996 * 109.47292 * 54.20063 * 15 14 13 36 36 H 1.08004 * 120.59882 * 0.04268 * 17 16 15 37 37 H 1.07994 * 121.68991 * 0.03753 * 21 20 18 38 38 H 1.07991 * 125.15001 * 180.26516 * 22 21 20 39 39 H 1.09004 * 109.46046 * 181.75857 * 26 14 13 40 40 H 1.09002 * 109.46049 * 301.71791 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6235 -2.5562 0.8911 11 6 0.3737 -2.5840 -1.2504 12 6 -0.3418 -3.9375 -1.2718 13 6 0.6981 -5.0596 -1.2345 14 7 1.5112 -4.9349 -0.0180 15 6 2.4284 -6.0738 0.1213 16 6 1.6333 -7.3347 0.3427 17 6 1.6540 -8.3432 -0.5973 18 6 0.9055 -9.4985 -0.3615 19 8 0.9059 -10.4076 -1.1768 20 7 0.1752 -9.6056 0.7848 21 6 -0.6110 -10.6599 1.1743 22 6 -1.2245 -10.5405 2.3244 23 16 -0.8293 -8.9886 3.0480 24 6 0.1956 -8.5822 1.6706 25 7 0.9091 -7.4827 1.4414 26 6 2.2448 -3.6628 0.0021 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3643 -1.7820 -1.2331 29 1 0.9972 -2.4875 -2.1392 30 1 -0.9950 -4.0177 -0.4029 31 1 -0.9349 -4.0211 -2.1825 32 1 1.3423 -4.9871 -2.1109 33 1 0.1914 -6.0246 -1.2352 34 1 3.0888 -5.9066 0.9721 35 1 3.0235 -6.1742 -0.7864 36 1 2.2388 -8.2418 -1.4996 37 1 -0.7183 -11.5438 0.5632 38 1 -1.8714 -11.2850 2.7642 39 1 2.8616 -3.6135 0.8995 40 1 2.8817 -3.5969 -0.8800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595618190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:11 Heat of formation + Delta-G solvation = 45.063115 kcal Electronic energy + Delta-G solvation = -24200.840834 eV Core-core repulsion = 20721.943151 eV Total energy + Delta-G solvation = -3478.897682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52149 -38.68290 -37.95239 -37.17879 -33.88002 -32.21080 -31.46204 -30.85316 -29.80450 -27.20751 -25.79404 -24.94247 -23.42798 -22.27779 -21.74576 -21.06247 -19.21362 -18.65737 -18.39989 -17.35303 -16.89562 -16.38544 -15.68857 -15.14604 -15.01694 -14.67873 -14.38990 -14.19868 -13.86527 -13.69684 -13.66533 -13.23459 -12.77749 -12.65202 -12.25229 -12.06147 -11.90189 -11.81680 -11.37521 -10.91970 -10.72604 -10.68738 -10.51425 -10.45831 -10.13315 -10.10651 -9.83055 -9.58241 -9.46309 -9.04987 -8.70287 -8.28825 -7.92157 -7.72755 -5.95566 -4.01884 -0.09014 0.30260 1.04378 1.08844 1.68006 1.99172 3.31732 3.33690 3.38551 3.40865 3.86872 4.01084 4.33340 4.49106 4.63616 4.69628 4.86369 5.16001 5.25685 5.34505 5.45903 5.55501 5.66794 5.72831 5.83870 5.98659 6.05993 6.17460 6.24363 6.37785 6.50059 6.70595 6.74856 6.94902 7.21861 7.35263 7.45789 7.49561 7.60058 7.73273 7.78868 8.09942 8.18870 8.48798 9.01889 9.62283 11.10420 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.002985 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.570054 B = 9376.740617 C = 9849.464754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.098 3.902 16 C 0.237 3.763 17 C -0.314 4.314 18 C 0.529 3.471 19 O -0.535 6.535 20 N -0.461 5.461 21 C 0.062 3.938 22 C -0.238 4.238 23 S 0.215 5.785 24 C 0.296 3.704 25 N -0.480 5.480 26 C 0.069 3.931 27 H 0.260 0.740 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.027 0.973 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.162 0.838 37 H 0.190 0.810 38 H 0.201 0.799 39 H 0.063 0.937 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -21.072 4.970 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.249 5.249 15 C -0.030 4.030 16 C 0.107 3.893 17 C -0.343 4.343 18 C 0.333 3.667 19 O -0.414 6.414 20 N -0.172 5.172 21 C -0.065 4.065 22 C -0.374 4.374 23 S 0.466 5.534 24 C -0.071 4.071 25 N -0.206 5.206 26 C -0.058 4.058 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.179 0.821 37 H 0.207 0.793 38 H 0.218 0.782 39 H 0.081 0.919 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.985 -20.206 6.496 21.434 hybrid contribution 1.306 -0.455 -2.559 2.908 sum -1.679 -20.661 3.937 21.099 Atomic orbital electron populations 1.69882 1.05835 1.26426 1.50517 1.24926 0.94819 0.98920 0.95127 0.86690 0.79607 0.83315 0.78538 1.20415 1.21358 1.20288 1.21100 0.92790 0.90626 1.50902 0.92848 1.18658 0.92591 0.90089 0.94924 0.94580 1.21659 1.00057 0.94596 0.98523 1.21660 0.97128 0.96386 1.00191 1.22080 0.95818 0.98677 0.90036 1.61988 1.23420 1.01390 1.38123 1.21056 0.93063 0.86920 1.01992 1.21512 0.87560 0.94276 0.85959 1.22609 1.11148 0.94873 1.05670 1.17285 0.80287 0.89825 0.79323 1.90969 1.65330 1.41572 1.43501 1.45348 1.37357 1.14828 1.19702 1.20822 0.93949 0.94042 0.97734 1.25194 1.09152 1.03713 0.99391 1.85486 1.43108 1.10520 1.14280 1.26340 0.98810 0.87272 0.94677 1.68096 1.12253 1.16400 1.23870 1.22365 0.96524 0.87801 0.99061 0.93011 0.89079 0.95101 0.92100 0.93561 0.95493 0.93030 0.88245 0.92629 0.82091 0.79281 0.78215 0.91855 0.95981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 11.36 55.43 0.63 -24.56 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.47 16 13 C 0.06 1.11 5.31 -3.83 -0.02 1.09 16 14 N -0.52 -9.57 4.65 -236.11 -1.10 -10.67 16 15 C 0.10 1.45 5.38 -4.98 -0.03 1.43 16 16 C 0.24 3.45 5.11 -82.47 -0.42 3.03 16 17 C -0.31 -4.42 9.54 -39.18 -0.37 -4.79 16 18 C 0.53 7.79 7.51 -15.02 -0.11 7.67 16 19 O -0.53 -9.07 17.46 4.82 0.08 -8.99 16 20 N -0.46 -5.62 2.82 -66.36 -0.19 -5.80 16 21 C 0.06 0.51 10.46 -16.85 -0.18 0.34 16 22 C -0.24 -1.34 11.12 29.04 0.32 -1.01 16 23 S 0.22 1.75 23.37 -107.50 -2.51 -0.76 16 24 C 0.30 3.67 8.32 -87.90 -0.73 2.94 16 25 N -0.48 -7.15 10.36 -9.01 -0.09 -7.24 16 26 C 0.07 1.42 4.68 -3.83 -0.02 1.40 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.88 7.00 -51.93 -0.36 0.52 16 34 H 0.10 1.38 7.99 -51.93 -0.41 0.97 16 35 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 36 H 0.16 2.06 7.98 -52.48 -0.42 1.64 16 37 H 0.19 1.25 8.00 -52.49 -0.42 0.83 16 38 H 0.20 0.34 8.06 -52.49 -0.42 -0.09 16 39 H 0.06 1.27 8.02 -51.93 -0.42 0.86 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -32.08 341.57 -10.77 -42.85 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.26 Total: -1.56 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.45 Total: -4.50 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.75 Total: -48.27 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.08 -10.77 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.908 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds