Wall clock time and date at job start Tue Mar 31 2020 12:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99741 * 2 1 4 4 H 1.48505 * 109.47013 * 239.99580 * 3 2 1 5 5 H 1.48493 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47103 * 119.99863 * 3 2 1 7 7 C 1.37874 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50312 * 300.07860 * 9 7 2 11 11 C 1.53127 * 109.50107 * 60.19863 * 9 7 2 12 12 C 1.53114 * 109.15797 * 177.59422 * 11 9 7 13 13 C 1.53035 * 109.28381 * 302.34429 * 12 11 9 14 14 N 1.46854 * 109.52269 * 59.18088 * 13 12 11 15 15 C 1.46894 * 111.00302 * 174.16729 * 14 13 12 16 16 C 1.50705 * 109.46495 * 294.20781 * 15 14 13 17 17 C 1.37877 * 120.25874 * 114.98157 * 16 15 14 18 18 C 1.39667 * 118.81112 * 180.02562 * 17 16 15 19 19 O 1.22106 * 120.19494 * 180.02562 * 18 17 16 20 20 N 1.36336 * 119.60245 * 359.97438 * 18 17 16 21 21 C 1.37165 * 127.31331 * 179.97438 * 20 18 17 22 22 C 1.30894 * 116.61715 * 180.02562 * 21 20 18 23 23 S 1.75729 * 109.69464 * 359.97438 * 22 21 20 24 24 C 1.35370 * 118.86279 * 359.97438 * 20 18 17 25 25 N 1.32420 * 120.26261 * 294.99465 * 16 15 14 26 26 C 1.46853 * 111.19435 * 298.26411 * 14 13 12 27 27 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.51948 * 297.49692 * 11 9 7 29 29 H 1.08993 * 109.51940 * 57.69032 * 11 9 7 30 30 H 1.09007 * 109.50769 * 62.28957 * 12 11 9 31 31 H 1.09002 * 109.49916 * 182.40276 * 12 11 9 32 32 H 1.09006 * 109.46331 * 299.17043 * 13 12 11 33 33 H 1.09000 * 109.46560 * 179.19562 * 13 12 11 34 34 H 1.08998 * 109.47552 * 174.21097 * 15 14 13 35 35 H 1.08996 * 109.47292 * 54.20063 * 15 14 13 36 36 H 1.08004 * 120.59882 * 0.04268 * 17 16 15 37 37 H 1.07994 * 121.68991 * 0.03753 * 21 20 18 38 38 H 1.07991 * 125.15001 * 180.26516 * 22 21 20 39 39 H 1.09004 * 109.46046 * 181.75857 * 26 14 13 40 40 H 1.09002 * 109.46049 * 301.71791 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6235 -2.5562 0.8911 11 6 0.3737 -2.5840 -1.2504 12 6 -0.3418 -3.9375 -1.2718 13 6 0.6981 -5.0596 -1.2345 14 7 1.5112 -4.9349 -0.0180 15 6 2.4284 -6.0738 0.1213 16 6 1.6333 -7.3347 0.3427 17 6 1.6540 -8.3432 -0.5973 18 6 0.9055 -9.4985 -0.3615 19 8 0.9059 -10.4076 -1.1768 20 7 0.1752 -9.6056 0.7848 21 6 -0.6110 -10.6599 1.1743 22 6 -1.2245 -10.5405 2.3244 23 16 -0.8293 -8.9886 3.0480 24 6 0.1956 -8.5822 1.6706 25 7 0.9091 -7.4827 1.4414 26 6 2.2448 -3.6628 0.0021 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3643 -1.7820 -1.2331 29 1 0.9972 -2.4875 -2.1392 30 1 -0.9950 -4.0177 -0.4029 31 1 -0.9349 -4.0211 -2.1825 32 1 1.3423 -4.9871 -2.1109 33 1 0.1914 -6.0246 -1.2352 34 1 3.0888 -5.9066 0.9721 35 1 3.0235 -6.1742 -0.7864 36 1 2.2388 -8.2418 -1.4996 37 1 -0.7183 -11.5438 0.5632 38 1 -1.8714 -11.2850 2.7642 39 1 2.8616 -3.6135 0.8995 40 1 2.8817 -3.5969 -0.8800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:10 Heat of formation + Delta-G solvation = 24.969971 kcal Electronic energy + Delta-G solvation = -24201.712138 eV Core-core repulsion = 20721.943151 eV Total energy + Delta-G solvation = -3479.768986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.44736 -40.07785 -38.98666 -38.33682 -35.57925 -33.77305 -32.42193 -32.07092 -31.55791 -28.39835 -26.90630 -26.75768 -24.64852 -23.45257 -23.11537 -22.45624 -20.41538 -20.00381 -19.43446 -18.41803 -18.20941 -17.82776 -16.93743 -16.52125 -16.35135 -15.86647 -15.69431 -15.38158 -15.02032 -14.87503 -14.72855 -14.56006 -14.46817 -14.16376 -13.63486 -13.46042 -13.43275 -12.82149 -12.74151 -12.58976 -12.52815 -12.47399 -11.86983 -11.72180 -11.53232 -11.37740 -11.28430 -11.14738 -10.84498 -10.66374 -10.47290 -10.34774 -9.17292 -8.78493 -8.04297 -6.18195 -1.01635 -0.49834 0.24003 0.44649 0.77985 1.15721 1.44852 1.45917 1.53335 2.27716 2.46472 2.89269 3.03250 3.19832 3.23046 3.67760 4.08074 4.12479 4.19011 4.22981 4.28243 4.34896 4.43573 4.49723 4.58243 4.61720 4.74022 4.82049 4.88531 4.97889 5.06359 5.08034 5.19078 5.22923 5.37957 5.52726 5.66710 5.95736 6.13144 6.21803 6.22034 6.44442 6.47072 6.52282 6.94489 7.49594 9.00339 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.002985 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.570054 B = 9376.740617 C = 9849.464754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.054 3.946 10 H -0.004 1.004 11 C -0.102 4.102 12 C -0.108 4.108 13 C 0.070 3.930 14 N -0.536 5.536 15 C 0.101 3.899 16 C 0.239 3.761 17 C -0.326 4.326 18 C 0.520 3.480 19 O -0.570 6.570 20 N -0.460 5.460 21 C 0.024 3.976 22 C -0.192 4.192 23 S 0.258 5.742 24 C 0.274 3.726 25 N -0.516 5.516 26 C 0.083 3.917 27 H 0.259 0.741 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.168 0.832 37 H 0.205 0.795 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 -22.779 5.923 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.014 0.986 11 C -0.140 4.140 12 C -0.146 4.146 13 C -0.058 4.058 14 N -0.261 5.261 15 C -0.027 4.027 16 C 0.107 3.893 17 C -0.356 4.356 18 C 0.326 3.674 19 O -0.453 6.453 20 N -0.169 5.169 21 C -0.101 4.101 22 C -0.328 4.328 23 S 0.510 5.490 24 C -0.090 4.090 25 N -0.243 5.243 26 C -0.044 4.044 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.185 0.815 37 H 0.222 0.778 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.255 -21.954 7.495 23.426 hybrid contribution 1.227 -0.016 -2.643 2.914 sum -2.027 -21.970 4.852 22.591 Atomic orbital electron populations 1.70036 1.07213 1.27051 1.51261 1.25716 0.95621 1.02313 0.94864 0.85683 0.78382 0.79170 0.78816 1.19693 1.21203 1.19594 1.21499 0.93122 0.91985 1.50693 0.92666 1.18570 0.92983 0.91326 0.93600 0.98564 1.21453 0.99160 0.95701 0.97710 1.21554 0.97437 0.95122 1.00517 1.21977 0.95380 0.98099 0.90329 1.61830 1.24304 1.01518 1.38466 1.21092 0.92726 0.85677 1.03251 1.21370 0.87715 0.94031 0.86227 1.22615 1.11940 0.94991 1.06072 1.17347 0.80673 0.89627 0.79774 1.90935 1.66914 1.42596 1.44838 1.45321 1.37000 1.15678 1.18920 1.21239 0.95314 0.94083 0.99512 1.25842 1.06859 1.02768 0.97355 1.85508 1.40432 1.11254 1.11846 1.27019 0.99056 0.86891 0.96064 1.68054 1.13728 1.18065 1.24457 1.22024 0.95329 0.87694 0.99309 0.93159 0.92416 0.95513 0.93571 0.91575 0.94567 0.91797 0.87562 0.90680 0.81488 0.77844 0.73337 0.91650 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 11.36 21.45 0.24 -53.22 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.42 8.56 25.60 0.22 -29.20 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.75 2.26 -11.49 -0.03 2.72 16 10 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 11 C -0.10 -4.93 5.03 30.67 0.15 -4.78 16 12 C -0.11 -4.34 6.09 30.64 0.19 -4.15 16 13 C 0.07 2.45 5.31 86.32 0.46 2.91 16 14 N -0.54 -19.38 4.65 -900.91 -4.19 -23.56 16 15 C 0.10 2.89 5.38 85.56 0.46 3.35 16 16 C 0.24 6.85 5.11 42.39 0.22 7.06 16 17 C -0.33 -9.14 9.54 22.53 0.22 -8.93 16 18 C 0.52 15.28 7.51 84.34 0.63 15.92 16 19 O -0.57 -19.53 17.46 -5.66 -0.10 -19.63 16 20 N -0.46 -10.68 2.82 -481.02 -1.36 -12.04 16 21 C 0.02 0.33 10.46 83.93 0.88 1.21 16 22 C -0.19 -1.34 11.12 67.89 0.75 -0.58 16 23 S 0.26 3.43 23.37 -56.49 -1.32 2.11 16 24 C 0.27 6.47 8.32 179.40 1.49 7.96 16 25 N -0.52 -15.08 10.36 -182.43 -1.89 -16.97 16 26 C 0.08 3.44 4.68 86.32 0.40 3.84 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.06 3.17 6.16 -2.39 -0.01 3.15 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.04 1.21 8.14 -2.38 -0.02 1.20 16 33 H 0.06 2.12 7.00 -2.39 -0.02 2.10 16 34 H 0.11 2.87 7.99 -2.39 -0.02 2.85 16 35 H 0.08 1.87 7.90 -2.39 -0.02 1.85 16 36 H 0.17 4.25 7.98 -2.91 -0.02 4.22 16 37 H 0.20 2.24 8.00 -2.91 -0.02 2.21 16 38 H 0.25 -0.77 8.06 -2.92 -0.02 -0.80 16 39 H 0.07 2.63 8.02 -2.38 -0.02 2.61 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.67 341.57 0.97 -71.70 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.05 Total: 7.39 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.50 Total: -1.45 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -7.19 Total: -105.79 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.10 Total: -19.63 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.32 Total: 2.11 kcal Total: -72.67 0.97 -71.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.674 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds