Wall clock time and date at job start Tue Mar 31 2020 12:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48506 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47349 * 300.00214 * 3 2 1 6 6 H 1.48502 * 109.46891 * 60.00644 * 3 2 1 7 7 C 1.37883 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50463 * 59.91824 * 9 7 2 11 11 C 1.53123 * 109.50101 * 299.80295 * 9 7 2 12 12 C 1.53123 * 109.16001 * 182.40587 * 11 9 7 13 13 C 1.53036 * 109.27788 * 57.65365 * 12 11 9 14 14 N 1.46842 * 109.52190 * 300.81892 * 13 12 11 15 15 C 1.46907 * 110.99676 * 185.84074 * 14 13 12 16 16 C 1.50694 * 109.47035 * 66.04843 * 15 14 13 17 17 N 1.30922 * 118.72534 * 269.73240 * 16 15 14 18 18 C 1.35197 * 121.08903 * 179.72384 * 17 16 15 19 19 C 1.40385 * 129.74607 * 180.21804 * 18 17 16 20 20 C 1.32355 * 115.78479 * 180.29107 * 19 18 17 21 21 S 1.75576 * 110.77861 * 0.02562 * 20 19 18 22 22 C 1.39799 * 117.77414 * 0.52952 * 18 17 16 23 23 C 1.40195 * 118.86449 * 359.74355 * 22 18 17 24 24 O 1.35529 * 120.54406 * 179.97438 * 23 22 18 25 25 N 1.32133 * 118.72713 * 89.99762 * 16 15 14 26 26 C 1.46848 * 111.20069 * 61.74451 * 14 13 12 27 27 H 0.97005 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52311 * 62.49780 * 11 9 7 29 29 H 1.09007 * 109.52076 * 302.30893 * 11 9 7 30 30 H 1.09000 * 109.50367 * 297.70910 * 12 11 9 31 31 H 1.09006 * 109.50264 * 177.59249 * 12 11 9 32 32 H 1.09002 * 109.46126 * 60.83950 * 13 12 11 33 33 H 1.09000 * 109.45809 * 180.80452 * 13 12 11 34 34 H 1.09004 * 109.46587 * 186.04463 * 15 14 13 35 35 H 1.08994 * 109.47194 * 306.04470 * 15 14 13 36 36 H 1.07998 * 122.10342 * 0.32151 * 19 18 17 37 37 H 1.07991 * 124.61015 * 180.02562 * 20 19 18 38 38 H 0.96701 * 113.99574 * 270.02183 * 24 23 22 39 39 H 1.09003 * 109.46014 * 58.27448 * 26 14 13 40 40 H 1.08995 * 109.46374 * 178.23478 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6233 -2.5563 -0.8910 11 6 0.3736 -2.5840 1.2504 12 6 -0.3421 -3.9375 1.2718 13 6 0.6979 -5.0596 1.2345 14 7 1.5109 -4.9349 0.0181 15 6 2.4280 -6.0740 -0.1212 16 6 1.6332 -7.3339 -0.3488 17 7 1.2597 -8.0385 0.6895 18 6 0.5404 -9.1736 0.5407 19 6 0.0461 -10.0569 1.5134 20 6 -0.6271 -11.1001 1.0548 21 16 -0.7048 -11.0693 -0.6990 22 6 0.2188 -9.5753 -0.7591 23 6 0.6479 -8.7878 -1.8366 24 8 0.3556 -9.1456 -3.1107 25 7 1.3447 -7.6874 -1.5889 26 6 2.2447 -3.6630 -0.0021 27 1 -0.4850 0.8401 0.0004 28 1 -0.3643 -1.7820 1.2331 29 1 0.9971 -2.4875 2.1393 30 1 -0.9953 -4.0176 0.4029 31 1 -0.9352 -4.0212 2.1826 32 1 1.3419 -4.9871 2.1110 33 1 0.1911 -6.0246 1.2353 34 1 3.0914 -5.9047 -0.9693 35 1 3.0200 -6.1772 0.7882 36 1 0.2048 -9.8951 2.5693 37 1 -1.0686 -11.8661 1.6750 38 1 1.0205 -9.7149 -3.5217 39 1 2.8816 -3.5971 0.8800 40 1 2.8614 -3.6137 -0.8995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595618222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:15 Heat of formation + Delta-G solvation = 38.085545 kcal Electronic energy + Delta-G solvation = -24124.685363 eV Core-core repulsion = 20645.485111 eV Total energy + Delta-G solvation = -3479.200252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44619 -38.38183 -38.00846 -36.54339 -33.79184 -32.61214 -31.91393 -30.44823 -29.74778 -27.05926 -25.05175 -24.79704 -23.62103 -22.07326 -21.55149 -20.60142 -19.16359 -18.83704 -18.48454 -17.42393 -16.56368 -16.11304 -15.49510 -15.10609 -14.93257 -14.58754 -14.26160 -14.07723 -13.89692 -13.56295 -13.24528 -12.71986 -12.59136 -12.33336 -12.20634 -12.01567 -11.79683 -11.61067 -11.26967 -10.93927 -10.83505 -10.77016 -10.60254 -10.57576 -10.03037 -9.79633 -9.58941 -9.52206 -9.43467 -9.01729 -8.65592 -8.33904 -8.26270 -7.68988 -5.93338 -3.99409 0.06095 0.51084 0.98645 1.45157 1.84911 3.02256 3.33089 3.39539 3.41450 3.45060 3.60720 4.07805 4.41856 4.46127 4.64189 4.73846 4.80722 5.22480 5.36887 5.44461 5.50333 5.64280 5.69308 5.80399 5.92878 6.06484 6.15777 6.32187 6.42288 6.55649 6.66717 6.77169 6.79307 6.98806 7.02433 7.25774 7.41235 7.65022 7.75844 7.81680 7.95293 8.12865 8.21819 8.51611 9.04846 9.64647 11.12771 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002842 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.508146 B = 9848.814990 C =10194.122895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.531 5.531 15 C 0.119 3.881 16 C 0.372 3.628 17 N -0.491 5.491 18 C 0.184 3.816 19 C -0.122 4.122 20 C -0.159 4.159 21 S 0.149 5.851 22 C -0.290 4.290 23 C 0.418 3.582 24 O -0.468 6.468 25 N -0.504 5.504 26 C 0.071 3.929 27 H 0.259 0.741 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.408 0.592 39 H 0.023 0.977 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -25.234 0.704 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.256 5.256 15 C -0.011 4.011 16 C 0.100 3.900 17 N -0.208 5.208 18 C 0.041 3.959 19 C -0.153 4.153 20 C -0.298 4.298 21 S 0.409 5.591 22 C -0.411 4.411 23 C 0.217 3.783 24 O -0.276 6.276 25 N -0.229 5.229 26 C -0.056 4.056 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.268 0.732 39 H 0.042 0.958 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.915 -24.941 -0.498 24.963 hybrid contribution 1.347 0.766 1.434 2.111 sum 0.433 -24.175 0.936 24.197 Atomic orbital electron populations 1.69911 1.05852 1.26168 1.50740 1.24941 0.94822 0.98965 0.95183 0.86565 0.80124 0.83969 0.77485 1.19837 1.21087 1.21151 1.21171 0.92870 0.90558 1.50563 0.92696 1.18673 0.92625 0.90144 0.94937 0.94678 1.21657 1.00032 0.94605 0.98499 1.21681 0.97214 0.96525 1.00053 1.22091 0.95718 0.98833 0.89872 1.61969 1.23653 1.01408 1.38597 1.20849 0.92642 0.85261 1.02332 1.22880 0.91121 0.94439 0.81537 1.68385 1.12674 1.04904 1.34831 1.19217 0.94220 0.92413 0.90018 1.19628 1.00888 0.93792 1.01020 1.25600 1.03113 1.02406 0.98655 1.84228 1.54586 1.18468 1.01782 1.24539 1.12301 1.04790 0.99453 1.18630 0.88361 0.87241 0.84024 1.84755 1.48399 1.71119 1.23326 1.68053 1.14821 1.14590 1.25445 1.22351 0.96518 0.87562 0.99138 0.93146 0.89121 0.95040 0.92381 0.93549 0.95364 0.92342 0.88078 0.92149 0.82362 0.80149 0.73223 0.95837 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.36 55.43 0.63 -25.06 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.67 5.03 -26.60 -0.13 -2.81 16 12 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 13 C 0.06 1.21 5.26 -3.84 -0.02 1.19 16 14 N -0.53 -10.42 4.65 -236.12 -1.10 -11.52 16 15 C 0.12 1.95 5.38 -4.98 -0.03 1.92 16 16 C 0.37 6.03 6.41 -157.65 -1.01 5.02 16 17 N -0.49 -7.57 9.14 -9.08 -0.08 -7.65 16 18 C 0.18 2.42 7.02 -84.99 -0.60 1.82 16 19 C -0.12 -1.17 10.16 -40.70 -0.41 -1.59 16 20 C -0.16 -1.13 11.09 28.81 0.32 -0.81 16 21 S 0.15 1.25 23.29 -107.50 -2.50 -1.26 16 22 C -0.29 -3.56 6.50 -38.26 -0.25 -3.81 16 23 C 0.42 5.66 7.86 -16.49 -0.13 5.53 16 24 O -0.47 -5.07 13.58 -18.28 -0.25 -5.32 16 25 N -0.50 -8.11 10.35 -10.73 -0.11 -8.22 16 26 C 0.07 1.52 4.68 -3.84 -0.02 1.50 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.10 6.24 -51.93 -0.32 0.77 16 34 H 0.10 1.54 7.98 -51.93 -0.41 1.13 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.41 2.06 9.06 45.56 0.41 2.48 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 1.33 8.01 -51.93 -0.42 0.91 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -32.67 341.42 -10.73 -43.41 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.41 Total: 0.31 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.04 Total: -6.24 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.66 Total: -52.45 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.25 Total: -5.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.67 -10.73 -43.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.491 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds