Wall clock time and date at job start Tue Mar 31 2020 12:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48506 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47349 * 300.00214 * 3 2 1 6 6 H 1.48502 * 109.46891 * 60.00644 * 3 2 1 7 7 C 1.37883 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50463 * 59.91824 * 9 7 2 11 11 C 1.53123 * 109.50101 * 299.80295 * 9 7 2 12 12 C 1.53123 * 109.16001 * 182.40587 * 11 9 7 13 13 C 1.53036 * 109.27788 * 57.65365 * 12 11 9 14 14 N 1.46842 * 109.52190 * 300.81892 * 13 12 11 15 15 C 1.46907 * 110.99676 * 185.84074 * 14 13 12 16 16 C 1.50694 * 109.47035 * 66.04843 * 15 14 13 17 17 N 1.30922 * 118.72534 * 269.73240 * 16 15 14 18 18 C 1.35197 * 121.08903 * 179.72384 * 17 16 15 19 19 C 1.40385 * 129.74607 * 180.21804 * 18 17 16 20 20 C 1.32355 * 115.78479 * 180.29107 * 19 18 17 21 21 S 1.75576 * 110.77861 * 0.02562 * 20 19 18 22 22 C 1.39799 * 117.77414 * 0.52952 * 18 17 16 23 23 C 1.40195 * 118.86449 * 359.74355 * 22 18 17 24 24 O 1.35529 * 120.54406 * 179.97438 * 23 22 18 25 25 N 1.32133 * 118.72713 * 89.99762 * 16 15 14 26 26 C 1.46848 * 111.20069 * 61.74451 * 14 13 12 27 27 H 0.97005 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52311 * 62.49780 * 11 9 7 29 29 H 1.09007 * 109.52076 * 302.30893 * 11 9 7 30 30 H 1.09000 * 109.50367 * 297.70910 * 12 11 9 31 31 H 1.09006 * 109.50264 * 177.59249 * 12 11 9 32 32 H 1.09002 * 109.46126 * 60.83950 * 13 12 11 33 33 H 1.09000 * 109.45809 * 180.80452 * 13 12 11 34 34 H 1.09004 * 109.46587 * 186.04463 * 15 14 13 35 35 H 1.08994 * 109.47194 * 306.04470 * 15 14 13 36 36 H 1.07998 * 122.10342 * 0.32151 * 19 18 17 37 37 H 1.07991 * 124.61015 * 180.02562 * 20 19 18 38 38 H 0.96701 * 113.99574 * 270.02183 * 24 23 22 39 39 H 1.09003 * 109.46014 * 58.27448 * 26 14 13 40 40 H 1.08995 * 109.46374 * 178.23478 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6233 -2.5563 -0.8910 11 6 0.3736 -2.5840 1.2504 12 6 -0.3421 -3.9375 1.2718 13 6 0.6979 -5.0596 1.2345 14 7 1.5109 -4.9349 0.0181 15 6 2.4280 -6.0740 -0.1212 16 6 1.6332 -7.3339 -0.3488 17 7 1.2597 -8.0385 0.6895 18 6 0.5404 -9.1736 0.5407 19 6 0.0461 -10.0569 1.5134 20 6 -0.6271 -11.1001 1.0548 21 16 -0.7048 -11.0693 -0.6990 22 6 0.2188 -9.5753 -0.7591 23 6 0.6479 -8.7878 -1.8366 24 8 0.3556 -9.1456 -3.1107 25 7 1.3447 -7.6874 -1.5889 26 6 2.2447 -3.6630 -0.0021 27 1 -0.4850 0.8401 0.0004 28 1 -0.3643 -1.7820 1.2331 29 1 0.9971 -2.4875 2.1393 30 1 -0.9953 -4.0176 0.4029 31 1 -0.9352 -4.0212 2.1826 32 1 1.3419 -4.9871 2.1110 33 1 0.1911 -6.0246 1.2353 34 1 3.0914 -5.9047 -0.9693 35 1 3.0200 -6.1772 0.7882 36 1 0.2048 -9.8951 2.5693 37 1 -1.0686 -11.8661 1.6750 38 1 1.0205 -9.7149 -3.5217 39 1 2.8816 -3.5971 0.8800 40 1 2.8614 -3.6137 -0.8995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:14 Heat of formation + Delta-G solvation = 12.980924 kcal Electronic energy + Delta-G solvation = -24125.773981 eV Core-core repulsion = 20645.485111 eV Total energy + Delta-G solvation = -3480.288870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41564 -39.88773 -38.95212 -37.52417 -35.57414 -33.79513 -33.48464 -31.77940 -31.34289 -28.35318 -26.92778 -25.82238 -24.79950 -23.53728 -23.18124 -21.70632 -20.41851 -19.99982 -19.69279 -18.45675 -18.25980 -17.35834 -16.70968 -16.64887 -16.11296 -15.87095 -15.45469 -15.29149 -15.10469 -14.93938 -14.64046 -14.38164 -14.11242 -13.77393 -13.48966 -13.21331 -13.12028 -12.86869 -12.79392 -12.56878 -12.48001 -12.32169 -11.93955 -11.75271 -11.67927 -11.64705 -11.39797 -10.92198 -10.67423 -10.57998 -10.38286 -10.34712 -9.26342 -9.04927 -8.06418 -6.20590 -0.76899 -0.48226 0.23889 0.75343 1.06962 1.42268 1.43677 1.55422 2.13793 2.32189 2.46480 2.66081 3.17427 3.20462 3.21173 3.53263 3.82217 4.04846 4.13805 4.19162 4.33454 4.43655 4.48336 4.60570 4.61213 4.71106 4.79760 4.86233 4.93399 4.94762 5.03775 5.12982 5.15346 5.33472 5.49204 5.64861 5.70205 5.92217 6.09655 6.18386 6.18700 6.35220 6.44157 6.91544 6.92138 7.47304 8.98903 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002842 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.508146 B = 9848.814990 C =10194.122895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.053 3.947 10 H -0.007 1.007 11 C -0.101 4.101 12 C -0.109 4.109 13 C 0.074 3.926 14 N -0.545 5.545 15 C 0.124 3.876 16 C 0.356 3.644 17 N -0.509 5.509 18 C 0.165 3.835 19 C -0.148 4.148 20 C -0.128 4.128 21 S 0.197 5.803 22 C -0.310 4.310 23 C 0.414 3.586 24 O -0.473 6.473 25 N -0.540 5.540 26 C 0.085 3.915 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.173 0.827 37 H 0.226 0.774 38 H 0.430 0.570 39 H 0.028 0.972 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -27.810 1.541 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.034 3.966 10 H 0.011 0.989 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.054 4.054 14 N -0.271 5.271 15 C -0.006 4.006 16 C 0.083 3.917 17 N -0.226 5.226 18 C 0.022 3.978 19 C -0.178 4.178 20 C -0.267 4.267 21 S 0.458 5.542 22 C -0.431 4.431 23 C 0.215 3.785 24 O -0.284 6.284 25 N -0.266 5.266 26 C -0.042 4.042 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.190 0.810 37 H 0.242 0.758 38 H 0.294 0.706 39 H 0.046 0.954 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.936 -27.572 0.321 27.589 hybrid contribution 1.239 1.344 1.108 2.137 sum 0.302 -26.227 1.428 26.268 Atomic orbital electron populations 1.70063 1.07313 1.26971 1.51378 1.25763 0.95654 1.02489 0.94813 0.85517 0.79169 0.79559 0.77458 1.18869 1.20853 1.20652 1.21533 0.93158 0.91805 1.50541 0.92520 1.18586 0.92984 0.91458 0.93551 0.98928 1.21453 0.99170 0.95557 0.97754 1.21583 0.97444 0.95340 1.00347 1.21954 0.95239 0.98158 0.90034 1.61824 1.24585 1.01693 1.38966 1.20802 0.92290 0.84404 1.03062 1.22607 0.92262 0.94717 0.82075 1.68301 1.13603 1.06096 1.34616 1.19792 0.94173 0.92327 0.91462 1.19794 1.02472 0.94277 1.01277 1.26178 1.00333 1.01795 0.98349 1.84134 1.52303 1.15162 1.02598 1.24791 1.12915 1.06584 0.98813 1.18787 0.87731 0.86900 0.85107 1.84705 1.49456 1.71735 1.22525 1.67965 1.16656 1.16366 1.25617 1.22024 0.95376 0.87378 0.99435 0.93142 0.92312 0.95196 0.94163 0.91303 0.94650 0.91514 0.87588 0.91020 0.80969 0.75764 0.70578 0.95353 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 11.36 21.45 0.24 -54.49 16 2 C 0.01 0.64 5.30 84.66 0.45 1.09 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -30.03 8.56 25.60 0.22 -29.81 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 10 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 11 C -0.10 -5.08 5.03 30.68 0.15 -4.92 16 12 C -0.11 -4.64 6.09 30.65 0.19 -4.46 16 13 C 0.07 2.84 5.26 86.33 0.45 3.29 16 14 N -0.55 -21.70 4.65 -900.95 -4.19 -25.88 16 15 C 0.12 4.08 5.38 85.55 0.46 4.54 16 16 C 0.36 11.62 6.41 138.91 0.89 12.52 16 17 N -0.51 -15.51 9.14 -182.65 -1.67 -17.18 16 18 C 0.16 4.13 7.02 39.53 0.28 4.41 16 19 C -0.15 -2.44 10.16 21.70 0.22 -2.22 16 20 C -0.13 -1.27 11.09 66.73 0.74 -0.53 16 21 S 0.20 2.64 23.29 -56.49 -1.32 1.33 16 22 C -0.31 -7.18 6.50 23.12 0.15 -7.03 16 23 C 0.41 11.06 7.86 85.06 0.67 11.73 16 24 O -0.47 -9.83 13.58 -88.32 -1.20 -11.03 16 25 N -0.54 -17.59 10.35 -300.65 -3.11 -20.70 16 26 C 0.08 3.72 4.68 86.32 0.40 4.12 16 27 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 28 H 0.06 3.32 6.16 -2.39 -0.01 3.30 16 29 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 2.48 6.24 -2.39 -0.01 2.47 16 34 H 0.11 3.29 7.98 -2.39 -0.02 3.28 16 35 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 36 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.43 3.86 9.06 -74.06 -0.67 3.19 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.07 2.80 8.01 -2.39 -0.02 2.78 16 Total: -1.00 -73.41 341.42 -3.56 -76.97 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.41 Total: 8.97 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.25 Total: -4.50 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -8.72 Total: -118.25 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.20 Total: -11.03 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.32 Total: 1.33 kcal Total: -73.41 -3.56 -76.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.947 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds