Wall clock time and date at job start Tue Mar 31 2020 12:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47046 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 120.00269 * 9 7 5 12 12 H 1.48508 * 109.46873 * 240.00304 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21505 * 120.00225 * 359.97438 * 15 14 13 17 17 C 1.48206 * 119.99697 * 179.97438 * 15 14 13 18 18 N 1.32972 * 120.61815 * 359.72288 * 17 15 14 19 19 C 1.31775 * 120.91095 * 179.76280 * 18 17 15 20 20 N 1.31186 * 122.64672 * 0.53083 * 19 18 17 21 21 C 1.34524 * 121.10503 * 359.73472 * 20 19 18 22 22 C 1.44794 * 130.27208 * 180.02562 * 21 20 19 23 23 C 1.32208 * 114.91005 * 179.97438 * 22 21 20 24 24 S 1.75363 * 111.45167 * 0.02562 * 23 22 21 25 25 C 1.40455 * 120.61500 * 180.02562 * 17 15 14 26 26 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 27 27 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 28 28 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 31 31 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 32 32 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 34 34 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 37 37 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 38 38 H 1.08004 * 118.67623 * 180.24632 * 19 18 17 39 39 H 1.07992 * 122.54519 * 0.02981 * 22 21 20 40 40 H 1.08002 * 124.26826 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4044 0.8661 -6.0651 12 1 0.4243 -0.5339 -6.0660 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5761 -1.4788 3.7811 17 6 1.3840 0.2082 4.8796 18 7 0.6234 1.2935 4.7718 19 6 0.1776 1.9169 5.8438 20 7 0.4592 1.5195 7.0619 21 6 1.2252 0.4353 7.2796 22 6 1.6552 -0.1729 8.5213 23 6 2.4133 -1.2470 8.3820 24 16 2.6820 -1.6274 6.6913 25 6 1.7162 -0.2599 6.1615 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 2.8616 -1.8824 -4.7336 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7578 2.3564 38 1 -0.4409 2.7928 5.7144 39 1 1.3769 0.2204 9.4878 40 1 2.8163 -1.8179 9.2054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597661940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:37 Heat of formation + Delta-G solvation = 22.701503 kcal Electronic energy + Delta-G solvation = -23656.381429 eV Core-core repulsion = 20176.514074 eV Total energy + Delta-G solvation = -3479.867354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48126 -39.56244 -37.20916 -36.54040 -33.97922 -33.42913 -32.07080 -31.01260 -27.37553 -26.78594 -26.52004 -25.37853 -24.98504 -22.97883 -22.11815 -20.59302 -19.03146 -18.62299 -17.80757 -17.09451 -16.34773 -15.91858 -15.90057 -15.51537 -14.90515 -14.86428 -14.55257 -14.50205 -13.84599 -13.64501 -13.20529 -13.11558 -12.79106 -12.68169 -12.23409 -12.08146 -11.72414 -11.26016 -11.12545 -11.03056 -11.00636 -10.85005 -10.65870 -10.49334 -10.44098 -10.26097 -9.91013 -9.74724 -9.71503 -9.21545 -8.94194 -8.93560 -8.37599 -8.34833 -6.01564 -4.02634 -0.15405 0.21622 1.00616 1.57717 1.60206 2.67650 2.90932 3.29557 3.37842 3.40012 3.40500 3.47939 3.65663 4.15766 4.28662 4.44459 4.62808 4.86100 5.11104 5.34234 5.39682 5.42645 5.51818 5.56890 5.72781 5.83505 6.15345 6.16729 6.20364 6.31547 6.35721 6.43494 6.62308 6.68965 7.03572 7.05635 7.09125 7.44175 7.61583 7.63503 7.73386 7.97105 8.08116 8.39036 9.02253 9.60677 11.09948 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.002640 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.383784 B =10603.056305 C =11339.074435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.688 5.688 15 C 0.556 3.444 16 O -0.522 6.522 17 C 0.195 3.805 18 N -0.485 5.485 19 C 0.297 3.703 20 N -0.479 5.479 21 C 0.167 3.833 22 C -0.124 4.124 23 C -0.183 4.183 24 S 0.220 5.780 25 C -0.231 4.231 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.412 0.588 38 H 0.209 0.791 39 H 0.158 0.842 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 3.661 24.545 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.339 5.339 15 C 0.338 3.662 16 O -0.398 6.398 17 C 0.035 3.965 18 N -0.202 5.202 19 C 0.005 3.995 20 N -0.193 5.193 21 C 0.021 3.979 22 C -0.154 4.154 23 C -0.321 4.321 24 S 0.483 5.517 25 C -0.353 4.353 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.249 0.751 38 H 0.225 0.775 39 H 0.176 0.824 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.780 2.513 23.667 23.866 hybrid contribution -0.925 1.309 -0.115 1.607 sum -2.705 3.822 23.551 24.012 Atomic orbital electron populations 1.21782 0.95112 1.01235 1.00504 1.20921 0.95642 0.95952 0.94744 1.21781 1.00538 0.95804 1.00505 1.19100 0.96390 0.95240 0.89408 1.21214 1.31123 1.12064 0.90448 0.92145 1.25014 0.95308 0.95087 0.99110 1.69974 1.37003 1.23064 1.23351 0.86591 0.78609 0.79697 0.83421 1.19773 1.21134 1.21138 1.21830 0.99297 0.96247 0.82454 1.46083 1.51218 1.31629 1.04969 1.17708 0.81465 0.84190 0.82856 1.90794 1.37784 1.25352 1.85863 1.21255 0.92238 0.91240 0.91733 1.68487 1.09854 1.06765 1.35107 1.24835 0.94933 0.98012 0.81755 1.68227 1.12559 1.12535 1.26022 1.20432 0.93852 0.91545 0.92085 1.20489 1.01246 0.96793 0.96905 1.25946 1.02003 1.00708 1.03424 1.85114 1.48676 1.23808 0.94093 1.24360 1.07602 1.04882 0.98456 0.95041 0.91264 0.93328 0.93331 0.91261 0.95044 0.96274 0.96273 0.93088 0.91159 0.91162 0.75069 0.77502 0.82434 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.38 7.65 -34.44 -0.26 -13.64 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.12 2.14 4.56 -4.04 -0.02 2.12 16 14 N -0.69 -10.40 4.95 -61.13 -0.30 -10.71 16 15 C 0.56 8.65 7.82 -12.17 -0.10 8.56 16 16 O -0.52 -9.17 15.21 5.36 0.08 -9.09 16 17 C 0.20 2.69 6.81 -82.44 -0.56 2.13 16 18 N -0.48 -5.97 9.69 -11.12 -0.11 -6.08 16 19 C 0.30 3.08 12.22 -92.69 -1.13 1.94 16 20 N -0.48 -5.47 10.49 -11.75 -0.12 -5.59 16 21 C 0.17 1.92 7.23 -83.24 -0.60 1.32 16 22 C -0.12 -1.03 10.39 -38.92 -0.40 -1.43 16 23 C -0.18 -1.31 11.03 28.81 0.32 -0.99 16 24 S 0.22 2.33 21.59 -107.50 -2.32 0.01 16 25 C -0.23 -2.94 6.35 -37.89 -0.24 -3.18 16 26 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 27 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 31 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.41 5.71 5.55 -40.82 -0.23 5.49 16 38 H 0.21 1.32 8.06 -52.48 -0.42 0.89 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.14 345.79 -9.41 -40.55 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.86 Total: 1.42 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.70 Total: -6.33 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.20 Total: -47.81 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.32 Total: 0.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -9.41 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.249 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds