Wall clock time and date at job start Tue Mar 31 2020 12:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47046 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 120.00269 * 9 7 5 12 12 H 1.48508 * 109.46873 * 240.00304 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21505 * 120.00225 * 359.97438 * 15 14 13 17 17 C 1.48206 * 119.99697 * 179.97438 * 15 14 13 18 18 N 1.32972 * 120.61815 * 359.72288 * 17 15 14 19 19 C 1.31775 * 120.91095 * 179.76280 * 18 17 15 20 20 N 1.31186 * 122.64672 * 0.53083 * 19 18 17 21 21 C 1.34524 * 121.10503 * 359.73472 * 20 19 18 22 22 C 1.44794 * 130.27208 * 180.02562 * 21 20 19 23 23 C 1.32208 * 114.91005 * 179.97438 * 22 21 20 24 24 S 1.75363 * 111.45167 * 0.02562 * 23 22 21 25 25 C 1.40455 * 120.61500 * 180.02562 * 17 15 14 26 26 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 27 27 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 28 28 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 31 31 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 32 32 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 34 34 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 37 37 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 38 38 H 1.08004 * 118.67623 * 180.24632 * 19 18 17 39 39 H 1.07992 * 122.54519 * 0.02981 * 22 21 20 40 40 H 1.08002 * 124.26826 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4044 0.8661 -6.0651 12 1 0.4243 -0.5339 -6.0660 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5761 -1.4788 3.7811 17 6 1.3840 0.2082 4.8796 18 7 0.6234 1.2935 4.7718 19 6 0.1776 1.9169 5.8438 20 7 0.4592 1.5195 7.0619 21 6 1.2252 0.4353 7.2796 22 6 1.6552 -0.1729 8.5213 23 6 2.4133 -1.2470 8.3820 24 16 2.6820 -1.6274 6.6913 25 6 1.7162 -0.2599 6.1615 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 2.8616 -1.8824 -4.7336 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7578 2.3564 38 1 -0.4409 2.7928 5.7144 39 1 1.3769 0.2204 9.4878 40 1 2.8163 -1.8179 9.2054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597661940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:36 Heat of formation + Delta-G solvation = 3.733384 kcal Electronic energy + Delta-G solvation = -23657.203948 eV Core-core repulsion = 20176.514074 eV Total energy + Delta-G solvation = -3480.689874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37500 -40.79291 -38.72959 -37.28693 -35.39254 -34.59652 -33.83213 -31.81404 -29.20511 -28.18601 -27.97725 -26.30624 -26.07260 -24.69552 -23.01599 -21.70999 -20.26824 -19.52696 -19.09078 -18.36478 -17.96655 -17.09322 -16.97337 -16.57553 -16.42104 -16.01540 -15.70081 -15.37269 -15.10383 -14.99193 -14.73794 -14.37175 -13.94686 -13.88308 -13.83511 -13.42481 -12.90532 -12.70518 -12.62622 -12.49381 -12.34692 -12.24624 -12.10125 -11.96970 -11.90365 -11.57232 -11.55872 -11.03032 -10.87447 -10.58800 -10.51093 -10.49463 -10.25577 -9.16676 -8.13459 -6.20562 -1.03811 -0.62948 0.21854 0.86684 0.88749 1.42131 1.43633 1.54993 1.60066 1.75165 2.44925 2.57418 2.62458 2.80732 3.20867 3.21460 3.40492 3.87232 3.96149 4.05214 4.08974 4.20584 4.54539 4.66760 4.69014 4.72265 4.76705 4.92378 4.94916 5.03157 5.08846 5.11845 5.25620 5.42263 5.48036 5.49931 5.51895 5.56783 5.79190 5.90641 6.25250 6.33709 6.72906 6.88526 6.94448 7.47026 8.99212 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.002640 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.383784 B =10603.056305 C =11339.074435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.258 1.258 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.137 3.863 14 N -0.681 5.681 15 C 0.556 3.444 16 O -0.548 6.548 17 C 0.176 3.824 18 N -0.491 5.491 19 C 0.295 3.705 20 N -0.485 5.485 21 C 0.161 3.839 22 C -0.132 4.132 23 C -0.150 4.150 24 S 0.179 5.821 25 C -0.250 4.250 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.064 0.936 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.419 0.581 38 H 0.246 0.754 39 H 0.188 0.812 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 5.546 26.866 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.332 5.332 15 C 0.339 3.661 16 O -0.425 6.425 17 C 0.017 3.983 18 N -0.208 5.208 19 C 0.004 3.996 20 N -0.199 5.199 21 C 0.013 3.987 22 C -0.161 4.161 23 C -0.288 4.288 24 S 0.442 5.558 25 C -0.372 4.372 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.259 0.741 38 H 0.262 0.738 39 H 0.205 0.795 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.137 4.431 26.004 26.565 hybrid contribution -0.493 0.698 -0.697 1.103 sum -3.629 5.129 25.307 26.075 Atomic orbital electron populations 1.21709 0.93673 1.01092 1.01567 1.20715 0.96677 0.96290 0.92768 1.21708 1.00052 0.94713 1.01567 1.18968 0.94471 0.94279 0.91975 1.21614 1.30299 1.12020 0.91050 0.90996 1.25919 0.95700 0.95877 1.02631 1.70121 1.38816 1.24956 1.24008 0.85515 0.78043 0.78839 0.79360 1.18124 1.21082 1.21091 1.21450 0.98492 0.95706 0.82945 1.45853 1.51407 1.31720 1.04254 1.18000 0.80833 0.83863 0.83368 1.90776 1.38816 1.26518 1.86397 1.20919 0.93833 0.92331 0.91200 1.68475 1.09849 1.06437 1.36054 1.25616 0.94490 0.98455 0.81049 1.68322 1.12623 1.12551 1.26414 1.21035 0.93355 0.91351 0.92936 1.20813 1.01436 0.96963 0.96870 1.26312 1.00480 1.00072 1.01911 1.85247 1.49093 1.23972 0.97469 1.24535 1.08401 1.05780 0.98486 0.91701 0.92343 0.94140 0.94145 0.92338 0.91707 0.99225 0.99222 0.93186 0.92360 0.92358 0.74121 0.73810 0.79534 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 3 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.20 7.65 25.60 0.20 -27.00 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 8 N -0.94 -56.61 13.29 21.45 0.28 -56.33 16 9 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.14 4.85 4.56 86.38 0.39 5.25 16 14 N -0.68 -20.32 4.95 -465.62 -2.31 -22.62 16 15 C 0.56 17.41 7.82 86.89 0.68 18.09 16 16 O -0.55 -19.82 15.21 -3.73 -0.06 -19.87 16 17 C 0.18 4.77 6.81 42.16 0.29 5.06 16 18 N -0.49 -11.31 9.69 -189.08 -1.83 -13.14 16 19 C 0.30 5.44 12.22 181.07 2.21 7.65 16 20 N -0.48 -9.97 10.49 -191.10 -2.00 -11.97 16 21 C 0.16 3.38 7.23 40.96 0.30 3.67 16 22 C -0.13 -1.78 10.39 22.92 0.24 -1.55 16 23 C -0.15 -1.69 11.03 66.79 0.74 -0.96 16 24 S 0.18 3.68 21.59 -56.49 -1.22 2.46 16 25 C -0.25 -6.17 6.35 23.37 0.15 -6.02 16 26 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 27 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 2.12 6.62 -2.39 -0.02 2.11 16 31 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 34 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.42 10.97 5.55 -92.71 -0.51 10.46 16 38 H 0.25 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.22 0.55 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -69.99 345.79 2.36 -67.63 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.57 Total: 11.45 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 6.90 Total: -3.11 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -5.86 Total: -104.06 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.22 Total: 2.46 kcal Total: -69.99 2.36 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597661940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.362 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds