Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00155 * 2 1 4 4 C 1.38755 * 120.05296 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93999 * 180.27973 * 4 3 2 6 6 C 1.38289 * 120.05202 * 359.48967 * 5 4 3 7 7 C 1.50706 * 119.93791 * 180.25765 * 6 5 4 8 8 S 1.81002 * 109.47169 * 270.24872 * 7 6 5 9 9 C 1.76195 * 99.99938 * 180.02562 * 8 7 6 10 10 N 1.32381 * 126.26068 * 0.03000 * 9 8 7 11 11 N 1.28518 * 110.20864 * 180.02562 * 10 9 8 12 12 C 1.33106 * 109.74136 * 359.97438 * 11 10 9 13 13 C 1.39776 * 126.56312 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99554 * 179.97438 * 13 12 11 15 15 C 1.40078 * 120.00205 * 359.97438 * 13 12 11 16 16 N 1.30823 * 119.99888 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47228 * 59.99680 * 17 15 13 19 19 H 1.48500 * 109.46902 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46935 * 299.99612 * 17 15 13 21 21 N 1.36675 * 126.25696 * 179.71548 * 9 8 7 22 22 C 1.46497 * 127.15006 * 359.97346 * 21 9 8 23 23 C 1.38237 * 120.11494 * 0.50894 * 6 5 4 24 24 C 1.38167 * 120.05858 * 359.74537 * 23 6 5 25 25 C 1.50693 * 120.03230 * 179.97438 * 24 23 6 26 26 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47208 * 300.00726 * 1 2 3 28 28 H 1.09006 * 109.47043 * 60.00389 * 1 2 3 29 29 H 1.08002 * 120.02789 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.96669 * 179.72334 * 5 4 3 31 31 H 1.08993 * 109.47243 * 30.25404 * 7 6 5 32 32 H 1.09001 * 109.46983 * 150.25353 * 7 6 5 33 33 H 0.96999 * 119.99747 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47325 * 90.02116 * 22 21 9 35 35 H 1.09004 * 109.46594 * 210.02502 * 22 21 9 36 36 H 1.09003 * 109.47050 * 330.02057 * 22 21 9 37 37 H 1.08006 * 119.97272 * 179.72959 * 23 6 5 38 38 H 1.09000 * 109.47146 * 270.02582 * 25 24 23 39 39 H 1.09006 * 109.47104 * 30.02426 * 25 24 23 40 40 H 1.08997 * 109.47215 * 150.02537 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6048 -0.0064 6 6 3.3020 3.6757 -0.0010 7 6 3.9862 5.0185 -0.0016 8 16 4.2603 5.5553 -1.7083 9 6 5.0499 7.1036 -1.4189 10 7 5.3215 7.6353 -0.2374 11 7 5.9009 8.7729 -0.3851 12 6 6.0382 9.0426 -1.6813 13 6 6.6207 10.1853 -2.2369 14 1 6.6771 10.2954 -3.3098 15 6 7.1314 11.1876 -1.4022 16 7 7.0635 11.0540 -0.1025 17 14 7.9092 12.7150 -2.1447 18 1 6.9086 13.4221 -2.9837 19 1 8.3676 13.6159 -1.0567 20 1 9.0694 12.3215 -2.9839 21 7 5.4995 7.9726 -2.3733 22 6 5.4236 7.8068 -3.8269 23 6 4.0560 2.5170 -0.0004 24 6 3.4312 1.2847 0.0001 25 6 4.2537 0.0221 0.0002 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2128 2.3204 -0.0014 30 1 1.3341 4.5113 -0.0113 31 1 3.3582 5.7464 0.5119 32 1 4.9441 4.9384 0.5124 33 1 7.4168 11.7482 0.4755 34 1 4.4898 8.2334 -4.1930 35 1 6.2649 8.3179 -4.2951 36 1 5.4599 6.7458 -4.0739 37 1 5.1345 2.5751 -0.0007 38 1 4.4520 -0.2824 -1.0275 39 1 5.1978 0.2034 0.5140 40 1 3.7063 -0.7681 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600528209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = 47.036100 kcal Electronic energy + Delta-G solvation = -22954.229681 eV Core-core repulsion = 19475.417554 eV Total energy + Delta-G solvation = -3478.812127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48769 -40.38022 -37.81290 -33.69335 -33.42212 -33.21666 -31.65291 -29.32406 -28.09725 -27.31762 -26.52470 -25.98869 -25.32140 -22.11088 -21.09001 -20.76457 -20.20720 -18.11756 -17.34971 -16.57712 -16.26052 -15.98510 -15.43333 -14.99746 -14.73001 -14.57352 -14.37830 -14.10609 -13.88208 -13.46915 -13.33335 -13.22460 -12.74741 -12.32463 -12.25771 -12.19361 -12.13568 -12.04445 -11.51690 -11.38098 -11.28515 -11.09663 -10.92033 -10.89123 -10.41388 -10.24025 -9.70637 -9.60035 -8.88810 -8.68372 -8.40765 -8.38331 -8.06135 -6.81624 -6.64102 -4.56526 1.13079 1.26309 2.26191 2.86377 2.93453 3.06331 3.08397 3.08582 3.37467 3.73967 3.87909 4.25532 4.43446 4.63128 4.67676 4.75580 4.85459 4.88809 5.16840 5.21546 5.25534 5.33358 5.40702 5.49802 5.56452 5.58946 5.60749 5.84617 5.89723 6.01887 6.05194 6.13661 6.23409 6.31078 6.59105 6.68016 6.78706 6.89603 7.22680 7.25258 7.50090 7.90575 8.18117 8.70879 8.86997 10.28460 10.65252 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.002373 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.242793 B =11798.088091 C =11864.304192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.124 3.876 4 C -0.204 4.204 5 C -0.067 4.067 6 C -0.099 4.099 7 C -0.047 4.047 8 S -0.051 6.051 9 C 0.045 3.955 10 N -0.287 5.287 11 N -0.334 5.334 12 C 0.346 3.654 13 C -0.447 4.447 14 H 0.083 0.917 15 C 0.078 3.922 16 N -0.737 5.737 17 Si 0.921 3.079 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 N -0.515 5.515 22 C 0.102 3.898 23 C -0.064 4.064 24 C -0.118 4.118 25 C -0.103 4.103 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.280 0.720 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 -17.336 -2.403 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.078 3.922 4 C -0.223 4.223 5 C -0.087 4.087 6 C -0.101 4.101 7 C -0.195 4.195 8 S 0.178 5.822 9 C -0.327 4.327 10 N -0.133 5.133 11 N -0.181 5.181 12 C 0.101 3.899 13 C -0.487 4.487 14 H 0.101 0.899 15 C -0.148 4.148 16 N -0.361 5.361 17 Si 0.745 3.255 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.190 1.190 21 N -0.218 5.218 22 C -0.043 4.043 23 C -0.084 4.084 24 C -0.119 4.119 25 C -0.160 4.160 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.581 -17.802 -1.677 20.286 hybrid contribution 0.302 1.571 -0.722 1.756 sum -9.278 -16.231 -2.399 18.849 Atomic orbital electron populations 1.23040 0.78624 1.03728 1.01407 1.86042 1.21125 1.26991 1.88820 1.18832 0.91794 0.84083 0.97515 1.21160 0.99872 0.92124 1.09152 1.20871 0.93777 0.97310 0.96695 1.19299 0.93482 0.93548 1.03763 1.22148 1.04580 0.95880 0.96891 1.84627 1.74261 1.13305 1.10000 1.25410 1.16987 1.00474 0.89786 1.74526 1.13381 1.06192 1.19167 1.75460 1.23672 1.06860 1.12119 1.21624 0.93200 0.87762 0.87282 1.18059 1.36601 0.99738 0.94350 0.89863 1.25798 0.94913 0.99480 0.94561 1.70006 1.30713 1.31804 1.03583 0.86176 0.79839 0.80166 0.79348 1.18979 1.20081 1.18972 1.46042 1.52235 1.17824 1.05668 1.21487 1.02206 1.01564 0.79063 1.20844 1.00121 0.90244 0.97209 1.19204 0.90543 0.96052 1.06059 1.20591 0.98778 0.94357 1.02269 0.88406 0.92699 0.92652 0.85430 0.85343 0.88364 0.88326 0.90933 0.92601 0.90387 0.91538 0.84913 0.91433 0.91575 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 9.54 -19.44 -0.19 -3.49 16 3 C 0.12 1.45 6.66 -39.22 -0.26 1.19 16 4 C -0.20 -2.27 9.04 -39.43 -0.36 -2.63 16 5 C -0.07 -0.83 9.69 -39.60 -0.38 -1.21 16 6 C -0.10 -1.36 5.14 -104.60 -0.54 -1.90 16 7 C -0.05 -0.76 5.35 36.01 0.19 -0.57 16 8 S -0.05 -0.95 21.77 -107.50 -2.34 -3.29 16 9 C 0.05 1.10 8.09 -87.28 -0.71 0.39 16 10 N -0.29 -7.94 11.62 30.89 0.36 -7.58 16 11 N -0.33 -10.13 10.48 31.26 0.33 -9.81 16 12 C 0.35 9.77 7.53 -154.80 -1.17 8.60 16 13 C -0.45 -11.93 9.04 -38.32 -0.35 -12.28 16 14 H 0.08 2.01 7.31 -52.49 -0.38 1.62 16 15 C 0.08 2.01 5.50 -17.29 -0.10 1.91 16 16 N -0.74 -20.39 11.94 55.56 0.66 -19.73 16 17 Si 0.92 18.61 29.56 -169.99 -5.03 13.58 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 N -0.52 -12.63 3.26 -123.18 -0.40 -13.03 16 22 C 0.10 1.89 10.87 59.85 0.65 2.54 16 23 C -0.06 -0.82 9.35 -39.61 -0.37 -1.19 16 24 C -0.12 -1.41 5.89 -104.48 -0.62 -2.02 16 25 C -0.10 -1.00 9.79 36.00 0.35 -0.65 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 32 H 0.10 1.69 8.08 -51.92 -0.42 1.27 16 33 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.36 7.54 -51.93 -0.39 0.96 16 36 H 0.07 1.09 7.85 -51.93 -0.41 0.69 16 37 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -33.84 356.18 -9.09 -42.94 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.21 Total: 1.68 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.65 Total: -6.64 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.95 Total: -50.14 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.19 Total: -3.49 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.34 Total: -3.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.84 -9.09 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600528209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.973 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds