Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00155 * 2 1 4 4 C 1.38755 * 120.05296 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93999 * 180.27973 * 4 3 2 6 6 C 1.38289 * 120.05202 * 359.48967 * 5 4 3 7 7 C 1.50706 * 119.93791 * 180.25765 * 6 5 4 8 8 S 1.81002 * 109.47169 * 270.24872 * 7 6 5 9 9 C 1.76195 * 99.99938 * 180.02562 * 8 7 6 10 10 N 1.32381 * 126.26068 * 0.03000 * 9 8 7 11 11 N 1.28518 * 110.20864 * 180.02562 * 10 9 8 12 12 C 1.33106 * 109.74136 * 359.97438 * 11 10 9 13 13 C 1.39776 * 126.56312 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99554 * 179.97438 * 13 12 11 15 15 C 1.40078 * 120.00205 * 359.97438 * 13 12 11 16 16 N 1.30823 * 119.99888 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47228 * 59.99680 * 17 15 13 19 19 H 1.48500 * 109.46902 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46935 * 299.99612 * 17 15 13 21 21 N 1.36675 * 126.25696 * 179.71548 * 9 8 7 22 22 C 1.46497 * 127.15006 * 359.97346 * 21 9 8 23 23 C 1.38237 * 120.11494 * 0.50894 * 6 5 4 24 24 C 1.38167 * 120.05858 * 359.74537 * 23 6 5 25 25 C 1.50693 * 120.03230 * 179.97438 * 24 23 6 26 26 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47208 * 300.00726 * 1 2 3 28 28 H 1.09006 * 109.47043 * 60.00389 * 1 2 3 29 29 H 1.08002 * 120.02789 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.96669 * 179.72334 * 5 4 3 31 31 H 1.08993 * 109.47243 * 30.25404 * 7 6 5 32 32 H 1.09001 * 109.46983 * 150.25353 * 7 6 5 33 33 H 0.96999 * 119.99747 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47325 * 90.02116 * 22 21 9 35 35 H 1.09004 * 109.46594 * 210.02502 * 22 21 9 36 36 H 1.09003 * 109.47050 * 330.02057 * 22 21 9 37 37 H 1.08006 * 119.97272 * 179.72959 * 23 6 5 38 38 H 1.09000 * 109.47146 * 270.02582 * 25 24 23 39 39 H 1.09006 * 109.47104 * 30.02426 * 25 24 23 40 40 H 1.08997 * 109.47215 * 150.02537 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6048 -0.0064 6 6 3.3020 3.6757 -0.0010 7 6 3.9862 5.0185 -0.0016 8 16 4.2603 5.5553 -1.7083 9 6 5.0499 7.1036 -1.4189 10 7 5.3215 7.6353 -0.2374 11 7 5.9009 8.7729 -0.3851 12 6 6.0382 9.0426 -1.6813 13 6 6.6207 10.1853 -2.2369 14 1 6.6771 10.2954 -3.3098 15 6 7.1314 11.1876 -1.4022 16 7 7.0635 11.0540 -0.1025 17 14 7.9092 12.7150 -2.1447 18 1 6.9086 13.4221 -2.9837 19 1 8.3676 13.6159 -1.0567 20 1 9.0694 12.3215 -2.9839 21 7 5.4995 7.9726 -2.3733 22 6 5.4236 7.8068 -3.8269 23 6 4.0560 2.5170 -0.0004 24 6 3.4312 1.2847 0.0001 25 6 4.2537 0.0221 0.0002 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2128 2.3204 -0.0014 30 1 1.3341 4.5113 -0.0113 31 1 3.3582 5.7464 0.5119 32 1 4.9441 4.9384 0.5124 33 1 7.4168 11.7482 0.4755 34 1 4.4898 8.2334 -4.1930 35 1 6.2649 8.3179 -4.2951 36 1 5.4599 6.7458 -4.0739 37 1 5.1345 2.5751 -0.0007 38 1 4.4520 -0.2824 -1.0275 39 1 5.1978 0.2034 0.5140 40 1 3.7063 -0.7681 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600528209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = 27.962429 kcal Electronic energy + Delta-G solvation = -22955.056778 eV Core-core repulsion = 19475.417554 eV Total energy + Delta-G solvation = -3479.639224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44679 -41.24149 -38.67687 -35.62374 -35.16535 -34.24713 -32.65975 -31.30429 -28.87115 -28.33618 -28.08228 -27.44958 -26.72682 -23.00109 -22.78954 -22.51835 -21.57816 -19.25713 -18.92453 -17.91003 -17.45046 -17.24205 -16.69970 -16.55157 -16.24153 -15.96512 -15.49268 -15.31917 -15.02162 -14.86521 -14.33677 -14.25048 -13.97999 -13.80677 -13.74405 -13.25204 -13.09518 -12.92453 -12.90055 -12.81413 -12.76063 -12.34759 -12.19845 -11.99108 -11.73541 -11.73285 -11.57923 -11.41844 -10.57443 -10.37021 -10.27634 -9.80529 -9.01573 -8.54047 -8.53337 -6.58408 -0.00164 0.33959 0.76975 1.20867 1.35430 1.41620 1.57155 1.62663 2.18792 2.37392 2.45057 2.51142 2.77378 3.34187 3.62382 3.73400 3.86032 4.07645 4.08210 4.30784 4.34630 4.43132 4.44581 4.47056 4.60977 4.61910 4.69425 4.75597 4.78115 4.86210 4.89040 4.95729 4.96094 5.25794 5.32203 5.32256 5.41990 5.56931 5.59220 5.77360 6.03842 6.21794 6.42660 6.75784 6.92590 8.41436 8.64698 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.002373 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.242793 B =11798.088091 C =11864.304192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.202 4.202 5 C -0.072 4.072 6 C -0.116 4.116 7 C -0.039 4.039 8 S -0.007 6.007 9 C 0.055 3.945 10 N -0.331 5.331 11 N -0.389 5.389 12 C 0.316 3.684 13 C -0.471 4.471 14 H 0.103 0.897 15 C 0.027 3.973 16 N -0.789 5.789 17 Si 1.008 2.992 18 H -0.254 1.254 19 H -0.272 1.272 20 H -0.253 1.253 21 N -0.522 5.522 22 C 0.094 3.906 23 C -0.070 4.070 24 C -0.128 4.128 25 C -0.101 4.101 26 H 0.120 0.880 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.284 0.716 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 -18.635 -4.264 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.078 3.922 4 C -0.220 4.220 5 C -0.092 4.092 6 C -0.119 4.119 7 C -0.187 4.187 8 S 0.222 5.778 9 C -0.319 4.319 10 N -0.176 5.176 11 N -0.236 5.236 12 C 0.069 3.931 13 C -0.511 4.511 14 H 0.121 0.879 15 C -0.193 4.193 16 N -0.414 5.414 17 Si 0.826 3.174 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.177 1.177 21 N -0.224 5.224 22 C -0.049 4.049 23 C -0.090 4.090 24 C -0.129 4.129 25 C -0.158 4.158 26 H 0.138 0.862 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.602 -19.123 -3.557 22.153 hybrid contribution 0.429 1.667 -0.150 1.728 sum -10.173 -17.456 -3.707 20.541 Atomic orbital electron populations 1.23363 0.76538 1.05632 1.02249 1.86042 1.23279 1.26264 1.88392 1.19011 0.91966 0.84832 0.96422 1.21406 1.01248 0.91270 1.08125 1.21013 0.93268 0.98361 0.96522 1.19132 0.94142 0.92204 1.06385 1.22124 1.04066 0.97259 0.95286 1.84444 1.72611 1.09052 1.11673 1.26508 1.14247 1.01942 0.89213 1.74401 1.15621 1.06494 1.21076 1.75315 1.25714 1.08433 1.14105 1.22062 0.94247 0.89296 0.87462 1.18589 1.37058 0.99933 0.95561 0.87874 1.27013 0.94701 1.02919 0.94683 1.70161 1.32190 1.33421 1.05602 0.84892 0.78997 0.75047 0.78454 1.17743 1.19661 1.17701 1.46389 1.51354 1.16854 1.07770 1.21845 1.03670 1.03525 0.75873 1.20926 1.00416 0.90364 0.97268 1.19467 0.91268 0.96424 1.05738 1.20616 0.98895 0.93396 1.02863 0.86160 0.91790 0.91788 0.82806 0.84664 0.89518 0.89587 0.90536 0.90805 0.89248 0.89195 0.84552 0.90765 0.90729 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.99 9.54 -92.49 -0.88 -6.87 16 3 C 0.12 2.65 6.66 22.51 0.15 2.80 16 4 C -0.20 -4.04 9.04 22.37 0.20 -3.84 16 5 C -0.07 -1.69 9.69 22.25 0.22 -1.48 16 6 C -0.12 -3.14 5.14 -19.85 -0.10 -3.24 16 7 C -0.04 -1.29 5.35 71.24 0.38 -0.91 16 8 S -0.01 -0.25 21.77 -56.49 -1.23 -1.48 16 9 C 0.05 2.70 8.09 179.18 1.45 4.14 16 10 N -0.33 -19.17 11.62 -56.18 -0.65 -19.82 16 11 N -0.39 -24.79 10.48 -55.01 -0.58 -25.37 16 12 C 0.32 18.38 7.53 133.23 1.00 19.39 16 13 C -0.47 -25.51 9.04 23.09 0.21 -25.30 16 14 H 0.10 4.92 7.31 -2.91 -0.02 4.90 16 15 C 0.03 1.43 5.50 85.29 0.47 1.90 16 16 N -0.79 -45.31 11.94 21.85 0.26 -45.05 16 17 Si 1.01 38.06 29.56 68.60 2.03 40.09 16 18 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 21 N -0.52 -25.77 3.26 -543.62 -1.77 -27.54 16 22 C 0.09 3.34 10.87 127.77 1.39 4.73 16 23 C -0.07 -1.72 9.35 22.25 0.21 -1.52 16 24 C -0.13 -2.87 5.89 -19.77 -0.12 -2.98 16 25 C -0.10 -1.79 9.79 71.23 0.70 -1.09 16 26 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 28 H 0.06 0.56 7.66 -2.38 -0.02 0.54 16 29 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.09 3.06 8.09 -2.40 -0.02 3.05 16 32 H 0.09 3.06 8.08 -2.39 -0.02 3.04 16 33 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 2.97 7.54 -2.38 -0.02 2.95 16 36 H 0.09 2.76 7.85 -2.39 -0.02 2.74 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 40 H 0.07 1.21 7.53 -2.39 -0.02 1.19 16 Total: -1.00 -77.04 356.18 5.50 -71.54 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.06 Total: 20.63 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 7.27 Total: -6.12 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -2.74 Total: -117.78 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.88 Total: -6.87 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -1.23 Total: -1.48 kcal Total: -77.04 5.50 -71.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600528209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.500 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds