Wall clock time and date at job start Tue Mar 31 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33741 * 124.52440 * 2 1 4 4 C 1.37595 * 115.08277 * 179.97438 * 3 2 1 5 5 C 1.50703 * 123.34737 * 179.97438 * 4 3 2 6 6 C 1.36479 * 113.30418 * 0.26668 * 4 3 2 7 7 C 1.47027 * 125.44980 * 179.73197 * 6 4 3 8 8 O 1.21996 * 119.99920 * 0.02562 * 7 6 4 9 9 N 1.34047 * 120.00279 * 180.02562 * 7 6 4 10 10 C 1.32875 * 120.00409 * 180.02562 * 9 7 6 11 11 C 1.41214 * 126.38346 * 0.02562 * 10 9 7 12 12 C 1.34970 * 108.24686 * 180.02562 * 11 10 9 13 13 C 1.50701 * 125.52367 * 179.97438 * 12 11 10 14 14 N 1.36462 * 108.95881 * 0.02562 * 12 11 10 15 15 C 1.46501 * 125.84920 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47661 * 84.99623 * 15 14 12 17 17 H 1.08007 * 120.00120 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00524 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99383 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00312 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47496 * 119.99668 * 20 18 16 23 23 H 1.48500 * 109.46911 * 239.99739 * 20 18 16 24 24 N 1.37495 * 126.38703 * 179.71727 * 10 9 7 25 25 H 0.97005 * 126.36787 * 359.97438 * 24 10 9 26 26 S 1.70615 * 124.52986 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46776 * 90.00466 * 1 2 3 28 28 H 1.09001 * 109.46912 * 209.99708 * 1 2 3 29 29 H 1.08992 * 109.47396 * 330.00584 * 1 2 3 30 30 H 1.08008 * 122.45813 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 90.02624 * 5 4 3 32 32 H 1.09001 * 109.46980 * 330.02725 * 5 4 3 33 33 H 1.09004 * 109.47113 * 210.02705 * 5 4 3 34 34 H 1.07999 * 125.87405 * 359.97438 * 11 10 9 35 35 H 1.09000 * 109.46937 * 90.02556 * 13 12 11 36 36 H 1.08997 * 109.47466 * 210.02183 * 13 12 11 37 37 H 1.09003 * 109.46692 * 330.02906 * 13 12 11 38 38 H 1.09000 * 109.46798 * 205.00265 * 15 14 12 39 39 H 1.09000 * 109.47203 * 324.99052 * 15 14 12 40 40 H 0.96998 * 119.99549 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1019 0.0000 4 6 3.6223 0.8762 0.0006 5 6 4.6460 1.9821 0.0001 6 6 3.9493 -0.4489 -0.0048 7 6 5.3164 -0.9898 -0.0112 8 8 6.2723 -0.2318 -0.0116 9 7 5.5126 -2.3158 -0.0167 10 6 6.7482 -2.8047 -0.0219 11 6 7.9453 -2.0558 -0.0220 12 6 8.9834 -2.9184 -0.0289 13 6 10.4407 -2.5346 -0.0319 14 7 8.4996 -4.1943 -0.0338 15 6 9.3057 -5.4176 -0.0413 16 6 9.6887 -5.7755 1.3715 17 1 9.3638 -5.1542 2.1931 18 6 10.4540 -6.8962 1.6155 19 7 10.8492 -7.6530 0.6152 20 14 10.9281 -7.3403 3.3669 21 1 10.3622 -6.3357 4.3028 22 1 10.3917 -8.6845 3.6993 23 1 12.4078 -7.3532 3.4909 24 7 7.0994 -4.1340 -0.0224 25 1 6.4911 -4.8897 -0.0186 26 16 2.4741 -1.4056 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.8427 2.0960 0.0004 31 1 4.8929 2.2491 1.0277 32 1 4.2397 2.8531 -0.5141 33 1 5.5460 1.6440 -0.5137 34 1 8.0178 -0.9782 -0.0182 35 1 10.7954 -2.4468 0.9950 36 1 11.0171 -3.3004 -0.5511 37 1 10.5637 -1.5790 -0.5417 38 1 8.7270 -6.2314 -0.4782 39 1 10.2072 -5.2550 -0.6321 40 1 11.3872 -8.4416 0.7869 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601395760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:07 Heat of formation + Delta-G solvation = 64.858936 kcal Electronic energy + Delta-G solvation = -23326.077599 eV Core-core repulsion = 19848.038328 eV Total energy + Delta-G solvation = -3478.039271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44315 -40.29273 -38.73895 -36.03810 -34.83322 -33.76736 -33.43562 -32.41326 -29.55100 -28.88338 -28.72804 -27.82176 -25.02420 -23.60175 -22.81611 -21.58383 -21.04594 -19.16562 -18.93687 -18.64790 -17.93327 -16.78226 -16.68110 -16.53908 -16.20957 -15.72512 -15.58589 -14.85007 -14.77465 -14.46031 -14.30316 -14.20219 -13.96551 -13.86731 -13.74152 -13.66780 -13.63969 -13.21021 -12.99092 -12.75561 -12.63274 -12.46981 -12.41310 -12.32624 -12.04368 -11.58360 -11.13789 -10.93588 -10.79041 -10.36468 -9.91743 -9.49024 -9.24213 -8.61102 -8.28697 -6.57521 -0.43262 0.30294 0.52111 0.73202 1.21746 1.35841 1.40449 1.42732 1.51085 1.78632 2.29172 2.67188 2.93293 3.04872 3.48285 3.65161 3.90384 4.20333 4.25122 4.33754 4.38097 4.59890 4.65676 4.71480 4.77574 4.78941 4.83170 4.85075 4.90102 4.94447 5.06986 5.09570 5.18094 5.25426 5.28757 5.49754 5.55457 5.64370 5.68205 5.96287 6.09942 6.38282 6.57512 6.74862 7.16161 7.75164 8.65268 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002725 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.745882 B =10273.291124 C =10929.155544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C -0.164 4.164 4 C -0.049 4.049 5 C -0.096 4.096 6 C -0.271 4.271 7 C 0.550 3.450 8 O -0.590 6.590 9 N -0.708 5.708 10 C 0.458 3.542 11 C -0.346 4.346 12 C 0.199 3.801 13 C -0.092 4.092 14 N -0.345 5.345 15 C 0.266 3.734 16 C -0.561 4.561 17 H 0.057 0.943 18 C 0.033 3.967 19 N -0.912 5.912 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.271 1.271 24 N -0.464 5.464 25 H 0.452 0.548 26 S 0.223 5.777 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.177 0.823 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 12.016 -2.236 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.327 4.327 3 C -0.194 4.194 4 C -0.064 4.064 5 C -0.154 4.154 6 C -0.391 4.391 7 C 0.338 3.662 8 O -0.475 6.475 9 N -0.472 5.472 10 C 0.209 3.791 11 C -0.377 4.377 12 C 0.072 3.928 13 C -0.150 4.150 14 N -0.131 5.131 15 C 0.149 3.851 16 C -0.599 4.599 17 H 0.075 0.925 18 C -0.170 4.170 19 N -0.549 5.549 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.197 1.197 24 N -0.187 5.187 25 H 0.301 0.699 26 S 0.492 5.508 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.182 0.818 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.194 0.806 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.361 9.785 -2.299 15.932 hybrid contribution 0.882 0.793 0.843 1.455 sum -11.479 10.578 -1.456 15.677 Atomic orbital electron populations 1.20484 0.85017 1.04430 1.04016 1.24773 1.03099 0.98008 1.06860 1.19963 0.91073 1.00769 1.07610 1.19815 0.96077 0.93196 0.97329 1.20622 0.97116 0.95074 1.02609 1.24195 0.97329 0.97507 1.20023 1.18195 0.87195 0.85001 0.75792 1.90556 1.42601 1.63164 1.51219 1.68857 1.18016 1.15536 1.44766 1.19274 0.91943 0.82670 0.85198 1.22184 0.89783 1.01832 1.23936 1.21906 0.98780 0.81787 0.90296 1.20796 0.84987 1.03986 1.05242 1.47878 0.92777 1.08447 1.64004 1.19756 0.89333 0.77702 0.98262 1.21532 1.34876 1.11101 0.92425 0.92520 1.25566 0.94853 0.95243 1.01321 1.69964 1.36149 1.16153 1.32675 0.85419 0.78420 0.78028 0.79330 1.19849 1.20454 1.19653 1.44522 0.96555 1.07345 1.70247 0.69876 1.83074 0.92895 1.07104 1.67757 0.89286 0.90481 0.88800 0.81789 0.91183 0.89539 0.91484 0.80586 0.88294 0.89657 0.86695 0.93950 0.91057 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.31 71.24 0.73 -0.38 16 2 C -0.21 -4.68 6.28 24.66 0.15 -4.52 16 3 C -0.16 -3.90 9.83 21.10 0.21 -3.70 16 4 C -0.05 -1.48 5.90 -20.43 -0.12 -1.60 16 5 C -0.10 -2.66 9.56 71.24 0.68 -1.98 16 6 C -0.27 -9.70 6.46 24.17 0.16 -9.55 16 7 C 0.55 23.28 7.71 86.66 0.67 23.95 16 8 O -0.59 -26.18 11.17 -5.30 -0.06 -26.24 16 9 N -0.71 -29.82 10.32 -311.64 -3.22 -33.04 16 10 C 0.46 18.72 8.07 133.94 1.08 19.80 16 11 C -0.35 -13.46 9.41 22.25 0.21 -13.25 16 12 C 0.20 6.99 6.92 41.09 0.28 7.27 16 13 C -0.09 -2.43 10.09 71.24 0.72 -1.71 16 14 N -0.34 -13.12 3.63 -337.53 -1.23 -14.35 16 15 C 0.27 11.10 5.93 85.63 0.51 11.61 16 16 C -0.56 -26.31 9.39 25.60 0.24 -26.07 16 17 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 18 C 0.03 1.56 5.46 84.65 0.46 2.02 16 19 N -0.91 -45.40 13.29 21.45 0.28 -45.12 16 20 Si 0.96 38.71 29.54 68.60 2.03 40.74 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 N -0.46 -17.32 7.38 -54.77 -0.40 -17.72 16 25 H 0.45 14.94 8.96 -213.28 -1.91 13.02 16 26 S 0.22 6.37 22.81 -56.49 -1.29 5.08 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.24 5.99 -2.38 -0.01 2.23 16 34 H 0.18 7.13 5.77 -2.91 -0.02 7.11 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.20 7.14 -2.39 -0.02 2.18 16 37 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.95 7.18 -2.39 -0.02 2.93 16 40 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 Total: -1.00 -62.29 355.14 1.27 -61.02 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.83 Total: 27.74 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.99 Total: 1.88 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.56 Total: -110.23 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -1.29 Total: 5.08 kcal Total: -62.29 1.27 -61.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.880 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds