Wall clock time and date at job start Tue Mar 31 2020 12:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47277 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99713 * 2 1 3 5 5 H 1.08001 * 120.00164 * 241.34685 * 4 2 1 6 6 C 1.37877 * 119.99883 * 61.35449 * 4 2 1 7 7 N 1.31516 * 120.00440 * 193.97653 * 6 4 2 8 8 Si 1.86803 * 120.00048 * 13.96974 * 6 4 2 9 9 H 1.48499 * 109.47093 * 84.55372 * 8 6 4 10 10 H 1.48503 * 109.47388 * 204.55298 * 8 6 4 11 11 H 1.48501 * 109.47355 * 324.55412 * 8 6 4 12 12 C 1.52997 * 109.46880 * 120.00180 * 2 1 3 13 13 N 1.46498 * 109.47233 * 299.99882 * 12 2 1 14 14 C 1.34776 * 120.00278 * 180.02562 * 13 12 2 15 15 O 1.21779 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.41744 * 120.00184 * 179.97438 * 14 13 12 17 17 S 1.75226 * 124.46992 * 0.02562 * 16 14 13 18 18 C 1.75963 * 92.52095 * 179.97438 * 17 16 14 19 19 N 1.33629 * 129.89122 * 179.97438 * 18 17 16 20 20 C 1.31219 * 122.22661 * 179.74834 * 19 18 17 21 21 C 1.38728 * 121.09847 * 0.55065 * 20 19 18 22 22 C 1.37643 * 119.44432 * 359.46287 * 21 20 19 23 23 C 1.39896 * 110.06445 * 0.02562 * 18 17 16 24 24 C 1.35592 * 124.46676 * 179.97438 * 16 14 13 25 25 N 1.38783 * 122.96905 * 0.02562 * 24 16 14 26 26 H 1.09002 * 109.47351 * 309.36871 * 1 2 3 27 27 H 1.09002 * 109.47157 * 69.36441 * 1 2 3 28 28 H 1.08997 * 109.47413 * 189.36545 * 1 2 3 29 29 H 1.09006 * 109.47119 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47200 * 300.00109 * 3 2 1 31 31 H 1.09002 * 109.47346 * 60.00029 * 3 2 1 32 32 H 0.96996 * 120.00248 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47093 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47516 * 59.99931 * 12 2 1 35 35 H 0.97003 * 120.00169 * 359.97438 * 13 12 2 36 36 H 1.08001 * 119.45598 * 180.26567 * 20 19 18 37 37 H 1.08000 * 120.27864 * 179.74300 * 21 20 19 38 38 H 1.08001 * 120.62602 * 180.28026 * 22 21 20 39 39 H 0.97001 * 120.00023 * 180.02562 * 25 24 16 40 40 H 0.97004 * 120.00091 * 359.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9157 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4816 -2.7083 10 1 0.2470 1.5866 -3.9288 11 1 0.1418 1.8044 -1.5158 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6695 15 8 2.5776 -1.4810 3.7812 16 6 1.4055 0.1776 4.8268 17 16 0.3935 1.6079 4.8026 18 6 0.3350 1.6912 6.5592 19 7 -0.2843 2.5676 7.3555 20 6 -0.2306 2.4836 8.6639 21 6 0.4894 1.4756 9.2884 22 6 1.1495 0.5415 8.5226 23 6 1.0773 0.6433 7.1144 24 6 1.6767 -0.2059 6.0988 25 7 2.4583 -1.3114 6.4039 26 1 -0.3634 0.6519 0.7945 27 1 -0.3633 0.3622 -0.9617 28 1 -0.3634 -1.0139 0.1672 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6973 -0.6300 -4.4268 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 -0.7519 3.2141 9.2648 37 1 0.5280 1.4214 10.3663 38 1 1.7120 -0.2540 8.9887 39 1 2.6245 -1.5471 7.3300 40 1 2.8378 -1.8488 5.6910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602159348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:42 Heat of formation + Delta-G solvation = 30.536590 kcal Electronic energy + Delta-G solvation = -23949.435732 eV Core-core repulsion = 20469.908132 eV Total energy + Delta-G solvation = -3479.527600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72728 -39.62467 -37.28858 -36.24085 -33.40763 -32.69521 -32.36019 -31.53212 -29.83435 -26.43445 -26.26179 -25.06835 -24.40193 -24.00870 -21.53641 -20.22053 -19.23243 -18.88017 -17.39210 -17.25076 -16.40066 -16.09771 -15.94032 -15.47228 -15.31357 -15.06075 -14.63147 -14.57940 -14.12400 -13.52416 -13.45150 -13.32315 -12.90668 -12.61055 -12.50601 -12.42682 -12.17849 -12.00837 -11.32216 -11.27859 -10.79663 -10.41797 -10.30217 -10.14462 -10.09461 -10.03801 -9.86145 -9.70020 -9.10546 -9.01281 -8.66060 -8.51827 -8.42254 -7.40426 -6.13053 -4.10282 0.06465 0.66800 1.08358 1.79356 1.82030 3.24513 3.27056 3.34622 3.41179 3.45427 3.51658 3.76062 4.06152 4.26372 4.31288 4.37961 4.57983 4.75845 4.99109 5.17955 5.23614 5.45218 5.54935 5.65271 5.82658 6.06201 6.07717 6.08909 6.39749 6.50195 6.55803 6.65150 6.72204 6.76112 6.95958 7.06060 7.23680 7.35490 7.45079 7.54136 7.73879 7.91473 8.45302 8.55700 8.91955 9.51087 10.99982 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.003212 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.117034 B = 8714.266245 C = 9568.171011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.143 3.857 13 N -0.717 5.717 14 C 0.598 3.402 15 O -0.562 6.562 16 C -0.360 4.360 17 S 0.180 5.820 18 C 0.088 3.912 19 N -0.462 5.462 20 C 0.148 3.852 21 C -0.188 4.188 22 C -0.018 4.018 23 C -0.162 4.162 24 C 0.299 3.701 25 N -0.826 5.826 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.395 0.605 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 5.669 26.987 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 C -0.206 4.206 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.021 3.979 13 N -0.367 5.367 14 C 0.387 3.613 15 O -0.444 6.444 16 C -0.487 4.487 17 S 0.439 5.561 18 C -0.156 4.156 19 N -0.173 5.173 20 C -0.022 4.022 21 C -0.211 4.211 22 C -0.046 4.046 23 C -0.176 4.176 24 C 0.175 3.825 25 N -0.370 5.370 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.223 0.777 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.936 6.368 25.050 26.145 hybrid contribution 0.671 -0.394 1.357 1.565 sum -3.265 5.974 26.407 27.271 Atomic orbital electron populations 1.22305 0.97805 0.99916 1.00033 1.18729 0.92571 0.92291 0.93761 1.22370 1.01242 0.98311 0.98643 1.20704 1.34063 1.12285 0.87960 0.90530 1.24965 0.94644 0.97307 0.95771 1.69949 1.48236 1.35928 0.98723 0.87312 0.79419 0.85558 0.76050 1.21313 1.23388 1.17399 1.21534 0.98656 0.95813 0.81893 1.46149 1.52801 1.31646 1.06060 1.15490 0.80082 0.83494 0.82194 1.90587 1.40518 1.27188 1.86145 1.21884 1.21152 1.09563 0.96089 1.84104 1.51754 1.25205 0.94987 1.23678 0.97458 0.94149 1.00349 1.67363 1.19323 1.24881 1.05708 1.22924 0.93892 0.95841 0.89591 1.21922 1.00710 0.96945 1.01553 1.21347 0.95146 0.97413 0.90651 1.19614 1.04872 0.98851 0.94276 1.17487 0.88302 0.86672 0.90003 1.42706 1.53744 1.28595 1.11915 0.95921 0.92432 0.93338 0.92720 0.93951 0.95174 0.92565 0.91798 0.91692 0.77082 0.81550 0.83798 0.84448 0.77670 0.73510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.53 37.16 0.28 -2.73 16 2 C 0.03 0.62 0.50 -155.67 -0.08 0.54 16 3 C -0.15 -3.11 7.52 37.16 0.28 -2.83 16 4 C -0.51 -13.88 8.62 -34.44 -0.30 -14.18 16 5 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.08 2.12 5.32 -17.82 -0.09 2.03 16 7 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 8 Si 0.88 21.35 22.79 -169.99 -3.87 17.48 16 9 H -0.29 -6.87 7.10 56.52 0.40 -6.47 16 10 H -0.31 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.25 -5.48 4.65 56.52 0.26 -5.22 16 12 C 0.14 2.94 4.49 -4.04 -0.02 2.93 16 13 N -0.72 -12.72 4.99 -63.18 -0.32 -13.04 16 14 C 0.60 10.44 7.59 -14.92 -0.11 10.33 16 15 O -0.56 -10.81 14.21 5.12 0.07 -10.74 16 16 C -0.36 -5.31 6.16 -39.19 -0.24 -5.56 16 17 S 0.18 2.36 22.00 -107.50 -2.36 0.00 16 18 C 0.09 1.10 7.63 -16.15 -0.12 0.98 16 19 N -0.46 -5.26 10.38 -11.73 -0.12 -5.39 16 20 C 0.15 1.12 11.18 -17.63 -0.20 0.93 16 21 C -0.19 -1.14 10.08 -39.62 -0.40 -1.54 16 22 C -0.02 -0.13 10.02 -38.61 -0.39 -0.52 16 23 C -0.16 -1.79 6.04 -105.27 -0.64 -2.43 16 24 C 0.30 3.78 6.99 -82.85 -0.58 3.20 16 25 N -0.83 -8.76 9.00 32.95 0.30 -8.46 16 26 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 27 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 28 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 31 H 0.03 0.53 6.86 -51.93 -0.36 0.18 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.39 6.46 5.13 -40.82 -0.21 6.25 16 36 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 0.60 7.69 -52.49 -0.40 0.20 16 39 H 0.40 2.70 8.38 -40.82 -0.34 2.36 16 40 H 0.43 5.36 6.06 -40.82 -0.25 5.11 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -32.80 328.60 -7.68 -40.48 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.50 Total: 9.62 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.60 Total: -8.86 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.63 Total: -52.94 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.87 Total: 17.48 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.36 Total: 0.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.80 -7.68 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602159348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.019 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds