Wall clock time and date at job start Tue Mar 31 2020 12:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47277 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99713 * 2 1 3 5 5 H 1.08001 * 120.00164 * 241.34685 * 4 2 1 6 6 C 1.37877 * 119.99883 * 61.35449 * 4 2 1 7 7 N 1.31516 * 120.00440 * 193.97653 * 6 4 2 8 8 Si 1.86803 * 120.00048 * 13.96974 * 6 4 2 9 9 H 1.48499 * 109.47093 * 84.55372 * 8 6 4 10 10 H 1.48503 * 109.47388 * 204.55298 * 8 6 4 11 11 H 1.48501 * 109.47355 * 324.55412 * 8 6 4 12 12 C 1.52997 * 109.46880 * 120.00180 * 2 1 3 13 13 N 1.46498 * 109.47233 * 299.99882 * 12 2 1 14 14 C 1.34776 * 120.00278 * 180.02562 * 13 12 2 15 15 O 1.21779 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.41744 * 120.00184 * 179.97438 * 14 13 12 17 17 S 1.75226 * 124.46992 * 0.02562 * 16 14 13 18 18 C 1.75963 * 92.52095 * 179.97438 * 17 16 14 19 19 N 1.33629 * 129.89122 * 179.97438 * 18 17 16 20 20 C 1.31219 * 122.22661 * 179.74834 * 19 18 17 21 21 C 1.38728 * 121.09847 * 0.55065 * 20 19 18 22 22 C 1.37643 * 119.44432 * 359.46287 * 21 20 19 23 23 C 1.39896 * 110.06445 * 0.02562 * 18 17 16 24 24 C 1.35592 * 124.46676 * 179.97438 * 16 14 13 25 25 N 1.38783 * 122.96905 * 0.02562 * 24 16 14 26 26 H 1.09002 * 109.47351 * 309.36871 * 1 2 3 27 27 H 1.09002 * 109.47157 * 69.36441 * 1 2 3 28 28 H 1.08997 * 109.47413 * 189.36545 * 1 2 3 29 29 H 1.09006 * 109.47119 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47200 * 300.00109 * 3 2 1 31 31 H 1.09002 * 109.47346 * 60.00029 * 3 2 1 32 32 H 0.96996 * 120.00248 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47093 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47516 * 59.99931 * 12 2 1 35 35 H 0.97003 * 120.00169 * 359.97438 * 13 12 2 36 36 H 1.08001 * 119.45598 * 180.26567 * 20 19 18 37 37 H 1.08000 * 120.27864 * 179.74300 * 21 20 19 38 38 H 1.08001 * 120.62602 * 180.28026 * 22 21 20 39 39 H 0.97001 * 120.00023 * 180.02562 * 25 24 16 40 40 H 0.97004 * 120.00091 * 359.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9157 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4816 -2.7083 10 1 0.2470 1.5866 -3.9288 11 1 0.1418 1.8044 -1.5158 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6695 15 8 2.5776 -1.4810 3.7812 16 6 1.4055 0.1776 4.8268 17 16 0.3935 1.6079 4.8026 18 6 0.3350 1.6912 6.5592 19 7 -0.2843 2.5676 7.3555 20 6 -0.2306 2.4836 8.6639 21 6 0.4894 1.4756 9.2884 22 6 1.1495 0.5415 8.5226 23 6 1.0773 0.6433 7.1144 24 6 1.6767 -0.2059 6.0988 25 7 2.4583 -1.3114 6.4039 26 1 -0.3634 0.6519 0.7945 27 1 -0.3633 0.3622 -0.9617 28 1 -0.3634 -1.0139 0.1672 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6973 -0.6300 -4.4268 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 -0.7519 3.2141 9.2648 37 1 0.5280 1.4214 10.3663 38 1 1.7120 -0.2540 8.9887 39 1 2.6245 -1.5471 7.3300 40 1 2.8378 -1.8488 5.6910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602159348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:41 Heat of formation + Delta-G solvation = 5.210545 kcal Electronic energy + Delta-G solvation = -23950.533952 eV Core-core repulsion = 20469.908132 eV Total energy + Delta-G solvation = -3480.625819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55627 -40.83732 -38.71351 -37.46727 -35.04642 -33.60424 -33.30444 -33.11435 -30.84301 -28.07372 -27.73390 -27.00151 -25.36891 -24.85810 -22.58359 -21.39608 -20.84355 -19.92672 -18.38577 -18.19247 -18.01160 -17.40037 -16.96918 -16.66839 -16.56121 -16.53686 -15.61769 -15.53381 -15.29241 -14.95707 -14.70684 -14.68170 -14.33294 -14.07744 -14.01756 -13.77932 -13.44689 -13.16449 -12.91555 -12.40318 -12.27612 -12.11228 -11.97760 -11.79183 -11.49298 -11.17479 -11.01254 -10.85352 -10.62457 -10.52020 -10.41551 -10.14896 -9.70806 -8.32621 -8.30841 -6.32238 -0.72675 0.05258 0.23258 0.89077 0.91242 1.36679 1.37628 1.50002 2.21443 2.29371 2.34204 2.64498 2.71296 3.05025 3.30862 3.57722 3.70021 3.98328 4.01905 4.09052 4.30529 4.34348 4.40068 4.45181 4.62832 4.73710 4.81148 4.84114 4.87823 4.92519 5.02979 5.08552 5.14161 5.37049 5.49575 5.54973 5.69469 5.76199 6.13389 6.29052 6.50753 6.69292 6.71699 6.74018 7.21637 7.32674 8.86170 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.003212 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.117034 B = 8714.266245 C = 9568.171011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.027 3.973 3 C -0.148 4.148 4 C -0.516 4.516 5 H 0.031 0.969 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.313 1.313 11 H -0.208 1.208 12 C 0.160 3.840 13 N -0.714 5.714 14 C 0.597 3.403 15 O -0.591 6.591 16 C -0.399 4.399 17 S 0.157 5.843 18 C 0.076 3.924 19 N -0.495 5.495 20 C 0.149 3.851 21 C -0.170 4.170 22 C -0.017 4.017 23 C -0.178 4.178 24 C 0.314 3.686 25 N -0.814 5.814 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.402 0.598 36 H 0.203 0.797 37 H 0.190 0.810 38 H 0.172 0.828 39 H 0.414 0.586 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 7.914 31.671 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.554 4.554 5 H 0.050 0.950 6 C -0.178 4.178 7 N -0.584 5.584 8 Si 0.770 3.230 9 H -0.208 1.208 10 H -0.242 1.242 11 H -0.132 1.132 12 C 0.036 3.964 13 N -0.364 5.364 14 C 0.389 3.611 15 O -0.476 6.476 16 C -0.525 4.525 17 S 0.415 5.585 18 C -0.168 4.168 19 N -0.207 5.207 20 C -0.020 4.020 21 C -0.193 4.193 22 C -0.044 4.044 23 C -0.192 4.192 24 C 0.188 3.812 25 N -0.356 5.356 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.239 0.761 36 H 0.220 0.780 37 H 0.207 0.793 38 H 0.190 0.810 39 H 0.246 0.754 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.189 8.614 29.823 31.473 hybrid contribution 1.102 -1.183 0.233 1.634 sum -4.087 7.431 30.056 31.230 Atomic orbital electron populations 1.22229 0.96289 1.00610 1.00776 1.18659 0.93663 0.93045 0.92054 1.22307 1.01151 0.96987 1.00047 1.20982 1.32966 1.11120 0.90334 0.95039 1.25808 0.95326 1.01438 0.95222 1.70099 1.50653 1.38210 0.99398 0.86373 0.79489 0.80179 0.76918 1.20771 1.24198 1.13238 1.21068 0.97531 0.95000 0.82805 1.45906 1.53327 1.31888 1.05315 1.15829 0.79472 0.83179 0.82649 1.90563 1.41879 1.28498 1.86631 1.21550 1.23983 1.11319 0.95636 1.83876 1.52435 1.25024 0.97213 1.23634 0.98359 0.95105 0.99715 1.67377 1.20445 1.25432 1.07419 1.23716 0.93088 0.96597 0.88573 1.22449 0.98198 0.94969 1.03636 1.21854 0.95014 0.98553 0.88982 1.19714 1.05376 0.98445 0.95637 1.17747 0.87005 0.86439 0.90047 1.42737 1.52350 1.27559 1.12939 0.92346 0.93304 0.93850 0.93176 0.94423 0.91591 0.92602 0.93457 0.93652 0.76107 0.78023 0.79310 0.81035 0.75419 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 7.53 71.98 0.54 -5.24 16 2 C 0.03 1.21 0.50 -52.93 -0.03 1.18 16 3 C -0.15 -5.96 7.52 71.98 0.54 -5.42 16 4 C -0.52 -29.13 8.62 25.60 0.22 -28.91 16 5 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 6 C 0.02 1.14 5.32 84.65 0.45 1.59 16 7 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 8 Si 0.94 43.92 22.79 68.60 1.56 45.49 16 9 H -0.28 -12.81 7.10 99.48 0.71 -12.11 16 10 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 11 H -0.21 -8.41 4.65 99.48 0.46 -7.95 16 12 C 0.16 6.77 4.49 86.38 0.39 7.16 16 13 N -0.71 -25.43 4.99 -472.00 -2.35 -27.78 16 14 C 0.60 21.14 7.59 85.11 0.65 21.79 16 15 O -0.59 -23.39 14.21 -4.60 -0.07 -23.46 16 16 C -0.40 -11.68 6.16 22.52 0.14 -11.54 16 17 S 0.16 4.03 22.00 -56.49 -1.24 2.79 16 18 C 0.08 1.77 7.63 84.82 0.65 2.42 16 19 N -0.49 -10.02 10.38 -191.01 -1.98 -12.01 16 20 C 0.15 1.61 11.18 84.90 0.95 2.56 16 21 C -0.17 -1.10 10.08 22.25 0.22 -0.88 16 22 C -0.02 -0.17 10.02 22.90 0.23 0.06 16 23 C -0.18 -3.49 6.04 -20.28 -0.12 -3.62 16 24 C 0.31 7.53 6.99 39.25 0.27 7.80 16 25 N -0.81 -16.02 9.00 -49.68 -0.45 -16.47 16 26 H 0.06 1.96 7.13 -2.39 -0.02 1.94 16 27 H 0.05 2.07 4.30 -2.39 -0.01 2.06 16 28 H 0.04 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.04 1.56 2.25 -2.39 -0.01 1.55 16 31 H 0.07 2.18 6.86 -2.39 -0.02 2.16 16 32 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.40 12.81 5.13 -92.71 -0.48 12.34 16 36 H 0.20 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 38 H 0.17 0.53 7.69 -2.91 -0.02 0.50 16 39 H 0.41 4.54 8.38 -92.71 -0.78 3.77 16 40 H 0.42 10.33 6.06 -92.71 -0.56 9.77 16 Total: -1.00 -76.70 328.60 -0.05 -76.76 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.93 Total: 24.75 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 5.10 Total: -11.06 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.48 Total: -115.26 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.46 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.56 Total: 45.49 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.24 Total: 2.79 kcal Total: -76.70 -0.05 -76.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602159348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.967 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds