Wall clock time and date at job start Tue Mar 31 2020 12:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.50702 * 109.47215 * 240.00260 * 2 1 3 5 5 H 1.08002 * 119.99722 * 239.99762 * 4 2 1 6 6 C 1.37876 * 120.00084 * 59.99467 * 4 2 1 7 7 N 1.31508 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99794 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47192 * 90.00316 * 8 6 4 10 10 H 1.48497 * 109.46961 * 210.00167 * 8 6 4 11 11 H 1.48499 * 109.47280 * 329.99878 * 8 6 4 12 12 C 1.53002 * 109.47358 * 119.99885 * 2 1 3 13 13 N 1.46500 * 109.46958 * 300.00373 * 12 2 1 14 14 C 1.34776 * 119.99857 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00119 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00193 * 179.97438 * 14 13 12 17 17 C 1.38956 * 120.00395 * 180.02562 * 16 14 13 18 18 S 1.71468 * 126.75712 * 359.68405 * 17 16 14 19 19 N 1.68830 * 97.06264 * 180.26345 * 18 17 16 20 20 C 1.32479 * 109.18667 * 359.97438 * 19 18 17 21 21 C 1.42657 * 127.45984 * 179.97438 * 20 19 18 22 22 C 1.35194 * 120.26729 * 180.02562 * 21 20 19 23 23 C 1.39560 * 121.60596 * 0.02562 * 22 21 20 24 24 C 1.35379 * 121.34153 * 359.97438 * 23 22 21 25 25 C 1.39845 * 126.76207 * 179.97438 * 17 16 14 26 26 H 1.08995 * 109.47112 * 300.00128 * 1 2 3 27 27 H 1.09000 * 109.47429 * 60.00087 * 1 2 3 28 28 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46814 * 299.99708 * 3 2 1 31 31 H 1.08995 * 109.47388 * 60.00041 * 3 2 1 32 32 H 0.97002 * 120.00623 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47165 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.46625 * 60.00206 * 12 2 1 35 35 H 0.96998 * 119.99941 * 359.97438 * 13 12 2 36 36 H 0.96998 * 119.99604 * 359.97438 * 16 14 13 37 37 H 1.08004 * 119.86655 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.19851 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.32213 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.91856 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5752 -1.4804 3.7811 16 7 1.4280 0.1442 4.7700 17 6 1.7637 -0.3305 6.0320 18 16 2.7254 -1.7044 6.3892 19 7 2.6389 -1.5868 8.0712 20 6 1.9020 -0.5351 8.3968 21 6 1.5767 -0.0758 9.7076 22 6 0.8067 1.0230 9.8732 23 6 0.3084 1.7379 8.7831 24 6 0.5766 1.3600 7.5111 25 6 1.3792 0.2150 7.2610 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.7093 1.1618 -3.4844 33 1 3.1301 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.8712 0.9335 4.6809 37 1 1.9464 -0.6086 10.5713 38 1 0.5707 1.3552 10.8734 39 1 -0.3036 2.6104 8.9579 40 1 0.1794 1.9304 6.6845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603034292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:49 Heat of formation + Delta-G solvation = 25.680276 kcal Electronic energy + Delta-G solvation = -23552.950659 eV Core-core repulsion = 20073.212473 eV Total energy + Delta-G solvation = -3479.738185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58029 -39.61973 -36.91742 -35.62958 -34.80623 -33.65850 -31.72215 -30.88911 -28.59092 -26.33348 -25.86989 -25.61410 -24.86905 -22.11870 -21.64596 -21.10835 -19.23986 -18.80921 -18.13940 -17.39370 -16.18405 -15.88351 -15.85111 -15.25064 -14.89615 -14.77620 -14.51623 -14.40352 -14.03779 -13.69584 -13.24449 -13.03377 -12.35966 -12.01199 -11.90573 -11.87932 -11.55308 -11.46565 -11.35902 -11.27522 -10.97041 -10.79636 -10.64237 -10.53162 -10.28043 -9.83303 -9.79633 -9.63771 -9.50419 -8.93260 -8.80138 -8.50347 -8.45937 -7.61979 -6.12599 -4.23189 -0.04778 1.17324 1.49831 1.79843 1.89999 2.44292 3.04002 3.22369 3.29908 3.33632 3.59835 4.14664 4.33798 4.43630 4.54334 4.81808 5.02313 5.12205 5.14817 5.28525 5.75432 5.80785 5.90211 6.04424 6.14256 6.14398 6.29926 6.36562 6.39403 6.49217 6.53982 6.66350 6.74578 6.82813 6.86800 6.92628 7.20662 7.41528 7.58600 7.80495 7.87658 8.00964 8.24028 8.35660 8.77275 9.43472 10.88970 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.002609 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.364637 B =10731.189983 C =11435.490650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.145 3.855 13 N -0.712 5.712 14 C 0.687 3.313 15 O -0.562 6.562 16 N -0.632 5.632 17 C 0.071 3.929 18 S 0.457 5.543 19 N -0.546 5.546 20 C 0.166 3.834 21 C -0.108 4.108 22 C -0.076 4.076 23 C -0.154 4.154 24 C -0.046 4.046 25 C -0.207 4.207 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.415 0.585 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 3.725 19.036 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.023 3.977 13 N -0.366 5.366 14 C 0.386 3.614 15 O -0.438 6.438 16 N -0.278 5.278 17 C -0.164 4.164 18 S 0.611 5.389 19 N -0.377 5.377 20 C 0.005 3.995 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.174 4.174 24 C -0.069 4.069 25 C -0.225 4.225 26 H 0.024 0.976 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.236 0.764 36 H 0.252 0.748 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.730 1.037 18.526 18.569 hybrid contribution -1.432 2.025 -0.775 2.599 sum -2.162 3.063 17.751 18.142 Atomic orbital electron populations 1.21854 0.97666 0.99346 1.00129 1.18384 0.92869 0.92820 0.90307 1.21854 0.98757 0.98254 1.00130 1.20940 1.31776 1.12252 0.89692 0.92267 1.24873 0.94761 0.94871 0.98931 1.69786 1.36540 1.22644 1.23417 0.86544 0.79369 0.79392 0.82437 1.20645 1.21221 1.19833 1.21845 0.98435 0.95744 0.81646 1.45550 1.54369 1.32768 1.03885 1.16156 0.81194 0.83323 0.80753 1.90894 1.41872 1.26666 1.84325 1.41929 1.52691 1.31626 1.01518 1.23504 1.02412 1.03018 0.87437 1.84780 1.39177 1.17770 0.97221 1.76685 1.28353 1.23503 1.09125 1.20388 0.94020 0.90736 0.94392 1.20483 1.01238 0.98097 0.93373 1.20598 0.95910 0.94347 0.99122 1.20451 1.03292 1.01525 0.92177 1.20437 0.95497 0.93502 0.97426 1.19622 1.10461 1.03228 0.89143 0.97647 0.89427 0.95253 0.95247 0.89421 0.97647 0.92883 0.92120 0.92119 0.76431 0.74764 0.85150 0.85577 0.85851 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.76 8.08 37.16 0.30 -2.46 16 4 C -0.51 -12.60 8.01 -34.44 -0.28 -12.88 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.62 9.35 55.43 0.52 -22.10 16 8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.15 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.71 -11.10 4.96 -65.23 -0.32 -11.42 16 14 C 0.69 10.68 8.53 -86.92 -0.74 9.94 16 15 O -0.56 -10.38 14.01 5.29 0.07 -10.31 16 16 N -0.63 -7.77 5.41 -15.03 -0.08 -7.85 16 17 C 0.07 0.95 7.31 -13.72 -0.10 0.85 16 18 S 0.46 6.69 20.85 -107.50 -2.24 4.45 16 19 N -0.55 -8.17 12.02 33.32 0.40 -7.77 16 20 C 0.17 2.25 6.99 -82.86 -0.58 1.67 16 21 C -0.11 -1.16 10.09 -38.96 -0.39 -1.55 16 22 C -0.08 -0.64 9.88 -40.17 -0.40 -1.04 16 23 C -0.15 -1.30 9.90 -40.11 -0.40 -1.70 16 24 C -0.05 -0.45 9.97 -39.14 -0.39 -0.84 16 25 C -0.21 -2.61 6.01 -104.81 -0.63 -3.24 16 26 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 27 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 31 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 5.42 6.18 -40.82 -0.25 5.17 16 36 H 0.42 3.70 8.54 -40.82 -0.35 3.35 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.88 7.84 -52.49 -0.41 0.47 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -28.34 341.70 -9.87 -38.21 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.86 Total: 4.84 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.49 Total: -8.20 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.51 Total: -49.14 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -2.24 Total: 4.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.34 -9.87 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603034292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.892 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds