Wall clock time and date at job start Tue Mar 31 2020 12:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.50702 * 109.47215 * 240.00260 * 2 1 3 5 5 H 1.08002 * 119.99722 * 239.99762 * 4 2 1 6 6 C 1.37876 * 120.00084 * 59.99467 * 4 2 1 7 7 N 1.31508 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99794 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47192 * 90.00316 * 8 6 4 10 10 H 1.48497 * 109.46961 * 210.00167 * 8 6 4 11 11 H 1.48499 * 109.47280 * 329.99878 * 8 6 4 12 12 C 1.53002 * 109.47358 * 119.99885 * 2 1 3 13 13 N 1.46500 * 109.46958 * 300.00373 * 12 2 1 14 14 C 1.34776 * 119.99857 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00119 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00193 * 179.97438 * 14 13 12 17 17 C 1.38956 * 120.00395 * 180.02562 * 16 14 13 18 18 S 1.71468 * 126.75712 * 359.68405 * 17 16 14 19 19 N 1.68830 * 97.06264 * 180.26345 * 18 17 16 20 20 C 1.32479 * 109.18667 * 359.97438 * 19 18 17 21 21 C 1.42657 * 127.45984 * 179.97438 * 20 19 18 22 22 C 1.35194 * 120.26729 * 180.02562 * 21 20 19 23 23 C 1.39560 * 121.60596 * 0.02562 * 22 21 20 24 24 C 1.35379 * 121.34153 * 359.97438 * 23 22 21 25 25 C 1.39845 * 126.76207 * 179.97438 * 17 16 14 26 26 H 1.08995 * 109.47112 * 300.00128 * 1 2 3 27 27 H 1.09000 * 109.47429 * 60.00087 * 1 2 3 28 28 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46814 * 299.99708 * 3 2 1 31 31 H 1.08995 * 109.47388 * 60.00041 * 3 2 1 32 32 H 0.97002 * 120.00623 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47165 * 180.02562 * 12 2 1 34 34 H 1.08997 * 109.46625 * 60.00206 * 12 2 1 35 35 H 0.96998 * 119.99941 * 359.97438 * 13 12 2 36 36 H 0.96998 * 119.99604 * 359.97438 * 16 14 13 37 37 H 1.08004 * 119.86655 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.19851 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.32213 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.91856 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5752 -1.4804 3.7811 16 7 1.4280 0.1442 4.7700 17 6 1.7637 -0.3305 6.0320 18 16 2.7254 -1.7044 6.3892 19 7 2.6389 -1.5868 8.0712 20 6 1.9020 -0.5351 8.3968 21 6 1.5767 -0.0758 9.7076 22 6 0.8067 1.0230 9.8732 23 6 0.3084 1.7379 8.7831 24 6 0.5766 1.3600 7.5111 25 6 1.3792 0.2150 7.2610 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.7093 1.1618 -3.4844 33 1 3.1301 -0.7208 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.8712 0.9335 4.6809 37 1 1.9464 -0.6086 10.5713 38 1 0.5707 1.3552 10.8734 39 1 -0.3036 2.6104 8.9579 40 1 0.1794 1.9304 6.6845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603034292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:48 Heat of formation + Delta-G solvation = 9.075765 kcal Electronic energy + Delta-G solvation = -23553.670684 eV Core-core repulsion = 20073.212473 eV Total energy + Delta-G solvation = -3480.458211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77045 -40.55619 -38.46643 -36.69979 -35.77147 -35.21443 -33.00667 -32.22096 -29.52775 -27.58996 -27.56236 -27.17688 -26.29741 -23.24614 -22.56939 -22.08183 -20.72166 -20.19911 -19.16945 -18.34664 -17.82958 -17.09474 -17.01380 -16.59299 -16.43290 -15.64903 -15.50884 -15.50011 -15.35657 -14.78144 -14.72339 -14.54308 -14.03530 -13.28175 -13.11839 -12.89964 -12.74416 -12.70297 -12.65709 -12.59401 -12.37886 -12.35969 -12.25692 -12.13293 -11.74364 -11.49904 -11.22806 -10.91773 -10.71753 -10.62381 -10.39677 -10.07426 -9.49794 -8.54770 -8.03205 -6.18281 -0.98557 0.15988 0.64304 0.83885 0.94851 1.32161 1.42671 1.46909 1.54105 1.83268 2.45257 2.80681 3.00300 3.21442 3.57867 3.65669 4.16692 4.23186 4.34501 4.44536 4.50327 4.57367 4.69309 4.80300 4.94562 5.04060 5.04943 5.07147 5.19506 5.19517 5.23954 5.39553 5.49533 5.57079 5.63662 5.64324 5.67261 5.68578 6.11642 6.15840 6.20780 6.42733 6.66638 6.86062 7.12746 7.49785 8.95626 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.002609 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.364637 B =10731.189983 C =11435.490650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.053 3.947 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.163 3.837 13 N -0.704 5.704 14 C 0.690 3.310 15 O -0.593 6.593 16 N -0.613 5.613 17 C 0.065 3.935 18 S 0.403 5.597 19 N -0.568 5.568 20 C 0.149 3.851 21 C -0.135 4.135 22 C -0.056 4.056 23 C -0.142 4.142 24 C -0.062 4.062 25 C -0.204 4.204 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.412 0.588 36 H 0.433 0.567 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 5.940 21.102 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.040 3.960 13 N -0.359 5.359 14 C 0.389 3.611 15 O -0.471 6.471 16 N -0.261 5.261 17 C -0.170 4.170 18 S 0.557 5.443 19 N -0.399 5.399 20 C -0.012 4.012 21 C -0.159 4.159 22 C -0.080 4.080 23 C -0.162 4.162 24 C -0.084 4.084 25 C -0.221 4.221 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.274 0.726 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.316 3.286 20.618 21.006 hybrid contribution -1.020 1.440 -1.209 2.139 sum -3.336 4.726 19.410 20.253 Atomic orbital electron populations 1.21700 0.97031 0.98842 1.00541 1.18361 0.93301 0.93063 0.90049 1.21700 0.98088 0.97785 1.00542 1.21262 1.31694 1.12212 0.91423 0.93502 1.25404 0.95176 0.95550 1.00880 1.69891 1.37016 1.23203 1.23599 0.85808 0.78686 0.78496 0.80105 1.20612 1.21016 1.20077 1.21348 0.97441 0.95055 0.82188 1.45158 1.54666 1.33000 1.03028 1.16139 0.80810 0.82984 0.81199 1.90892 1.43158 1.28152 1.84896 1.41538 1.52509 1.31816 1.00272 1.23435 1.02791 1.02742 0.87988 1.84833 1.41281 1.19929 0.98227 1.76721 1.29788 1.24846 1.08526 1.21004 0.93673 0.90475 0.96092 1.20749 1.03010 0.99680 0.92428 1.21100 0.93248 0.92508 1.01156 1.20968 1.02013 1.01855 0.91398 1.20826 0.95433 0.92861 0.99294 1.19893 1.10234 1.03803 0.88218 0.94188 0.91948 0.96172 0.96159 0.91943 0.94188 0.93053 0.93515 0.93495 0.74949 0.72564 0.84298 0.81866 0.82247 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 2 C 0.05 2.26 0.50 -52.92 -0.03 2.23 16 3 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 4 C -0.53 -26.47 8.01 25.60 0.21 -26.26 16 5 H 0.05 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.51 5.15 84.66 0.44 1.95 16 7 N -0.90 -46.09 9.35 21.45 0.20 -45.89 16 8 Si 0.94 41.35 29.54 68.60 2.03 43.38 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 C 0.16 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -20.93 4.96 -478.54 -2.37 -23.31 16 14 C 0.69 20.91 8.53 179.06 1.53 22.44 16 15 O -0.59 -22.29 14.01 -3.99 -0.06 -22.34 16 16 N -0.61 -14.12 5.41 -319.72 -1.73 -15.85 16 17 C 0.06 1.69 7.31 83.95 0.61 2.31 16 18 S 0.40 12.33 20.85 -56.49 -1.18 11.15 16 19 N -0.57 -17.46 12.02 -48.50 -0.58 -18.04 16 20 C 0.15 3.91 6.99 42.11 0.29 4.21 16 21 C -0.14 -2.60 10.09 22.67 0.23 -2.37 16 22 C -0.06 -0.71 9.88 21.89 0.22 -0.49 16 23 C -0.14 -1.70 9.90 21.93 0.22 -1.48 16 24 C -0.06 -0.98 9.97 22.55 0.22 -0.75 16 25 C -0.20 -4.78 6.01 -19.99 -0.12 -4.90 16 26 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 27 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 2.90 6.07 -2.38 -0.01 2.89 16 31 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 32 H 0.26 12.93 8.31 -92.71 -0.77 12.15 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 10.02 6.18 -92.71 -0.57 9.45 16 36 H 0.43 6.46 8.54 -92.71 -0.79 5.67 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.15 1.46 7.84 -2.91 -0.02 1.44 16 Total: -1.00 -63.40 341.70 1.40 -62.00 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.27 Total: 14.32 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.37 Total: -5.42 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.49 Total: -103.09 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 12.33 SS G_CDS: -1.18 Total: 11.15 kcal Total: -63.40 1.40 -62.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603034292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.075 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds