Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00260 * 2 1 4 4 C 1.38753 * 120.05806 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94630 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.97282 * 180.02562 * 5 4 3 7 7 S 1.81001 * 109.47052 * 89.99579 * 6 5 4 8 8 C 1.76202 * 99.99784 * 179.97438 * 7 6 5 9 9 N 1.32388 * 126.26021 * 359.97438 * 8 7 6 10 10 N 1.28516 * 110.20609 * 180.02562 * 9 8 7 11 11 C 1.33098 * 109.74302 * 0.02562 * 10 9 8 12 12 C 1.39776 * 126.56257 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36669 * 126.25987 * 180.30691 * 8 7 6 21 21 C 1.46505 * 127.15024 * 359.97438 * 20 8 7 22 22 C 1.38289 * 120.05237 * 0.27294 * 5 4 3 23 23 C 1.38241 * 120.11452 * 359.45021 * 22 5 4 24 24 C 1.38173 * 120.05532 * 0.55142 * 23 22 5 25 25 C 1.50700 * 120.03073 * 179.70367 * 24 23 22 26 26 H 1.09011 * 109.46435 * 59.99828 * 1 2 3 27 27 H 1.08992 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46998 * 300.00449 * 1 2 3 29 29 H 1.08001 * 120.02519 * 0.04228 * 4 3 2 30 30 H 1.09003 * 109.46642 * 329.99665 * 6 5 4 31 31 H 1.08993 * 109.47041 * 209.99993 * 6 5 4 32 32 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 33 33 H 1.08991 * 109.47295 * 270.14314 * 21 20 8 34 34 H 1.08996 * 109.46934 * 30.14387 * 21 20 8 35 35 H 1.09000 * 109.46691 * 150.13746 * 21 20 8 36 36 H 1.08000 * 119.94314 * 179.70881 * 22 5 4 37 37 H 1.08000 * 119.97649 * 180.25539 * 23 22 5 38 38 H 1.09002 * 109.46951 * 270.02433 * 25 24 23 39 39 H 1.09006 * 109.46816 * 30.01854 * 25 24 23 40 40 H 1.08994 * 109.47344 * 150.02111 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0000 6 6 1.1022 4.8698 0.0012 7 16 0.7763 5.3760 1.7081 8 6 -0.1677 6.8355 1.4195 9 7 -0.4925 7.3371 0.2382 10 7 -1.1853 8.4094 0.3864 11 6 -1.3483 8.6637 1.6827 12 6 -2.0435 9.7412 2.2388 13 1 -2.0273 9.9008 3.3068 14 6 -2.7610 10.6142 1.4109 15 7 -3.3445 11.6679 1.9210 16 14 -2.8845 10.2733 -0.4216 17 1 -3.6924 11.3377 -1.0697 18 1 -1.5232 10.2544 -1.0145 19 1 -3.5369 8.9568 -0.6373 20 7 -0.6932 7.6602 2.3742 21 6 -0.5874 7.5112 3.8278 22 6 3.3021 3.6756 -0.0068 23 6 4.0561 2.5170 -0.0015 24 6 3.4312 1.2846 -0.0010 25 6 4.2537 0.0219 -0.0021 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2129 2.3204 0.0016 30 1 0.1571 4.6913 -0.5117 31 1 1.6513 5.6585 -0.5131 32 1 -3.3442 11.8054 2.8812 33 1 -1.4233 6.9152 4.1938 34 1 0.3499 7.0126 4.0745 35 1 -0.6099 8.4951 4.2964 36 1 3.7925 4.6379 -0.0119 37 1 5.1346 2.5750 -0.0027 38 1 4.4513 -0.2821 -1.0300 39 1 5.1982 0.2031 0.5111 40 1 3.7068 -0.7685 0.5118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603331859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = 17.021277 kcal Electronic energy + Delta-G solvation = -23213.830007 eV Core-core repulsion = 19733.716339 eV Total energy + Delta-G solvation = -3480.113668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86249 -41.25767 -38.59668 -35.95599 -35.44649 -34.82924 -32.03639 -31.15497 -30.35804 -28.46552 -28.39808 -27.30359 -25.73948 -23.35698 -23.21581 -22.34144 -21.85020 -20.20781 -18.80958 -18.05668 -17.36892 -17.08259 -16.86794 -16.72420 -16.46874 -16.02719 -15.73454 -15.34635 -15.14854 -14.93031 -14.67991 -14.33932 -14.25196 -14.04054 -13.83981 -13.58240 -13.14721 -13.07175 -12.94446 -12.84625 -12.80193 -12.25693 -12.19154 -11.93904 -11.83420 -11.68603 -11.53906 -11.42097 -10.92993 -10.58734 -10.39195 -9.73184 -9.50553 -9.07501 -8.72227 -6.87855 -0.16087 0.42997 0.61743 0.96643 1.21781 1.53016 1.58447 1.92535 2.10845 2.19532 2.36404 2.40542 2.77039 3.02798 3.44805 3.75254 3.91131 3.93502 4.11399 4.26002 4.28137 4.31326 4.36978 4.45684 4.50965 4.53660 4.58272 4.65331 4.67543 4.73825 4.79356 4.87854 4.91117 5.21064 5.26673 5.32897 5.35637 5.50939 5.55906 5.66984 5.81134 5.99042 6.37491 6.39800 6.55178 7.91081 8.13362 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.002781 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.760487 B =10064.791363 C =10214.895657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.113 3.887 4 C -0.192 4.192 5 C -0.052 4.052 6 C -0.051 4.051 7 S 0.011 5.989 8 C 0.079 3.921 9 N -0.310 5.310 10 N -0.448 5.448 11 C 0.325 3.675 12 C -0.508 4.508 13 H 0.084 0.916 14 C 0.042 3.958 15 N -0.822 5.822 16 Si 1.145 2.855 17 H -0.297 1.297 18 H -0.277 1.277 19 H -0.295 1.295 20 N -0.515 5.515 21 C 0.093 3.907 22 C -0.138 4.138 23 C -0.081 4.081 24 C -0.121 4.121 25 C -0.102 4.102 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.286 0.714 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -22.481 0.453 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.068 3.932 4 C -0.213 4.213 5 C -0.054 4.054 6 C -0.199 4.199 7 S 0.240 5.760 8 C -0.296 4.296 9 N -0.153 5.153 10 N -0.296 5.296 11 C 0.078 3.922 12 C -0.549 4.549 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.447 5.447 16 Si 0.974 3.026 17 H -0.226 1.226 18 H -0.204 1.204 19 H -0.222 1.222 20 N -0.215 5.215 21 C -0.050 4.050 22 C -0.159 4.159 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.158 4.158 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.243 -22.340 -1.318 25.509 hybrid contribution -0.500 0.647 2.026 2.185 sum 11.743 -21.693 0.708 24.677 Atomic orbital electron populations 1.23302 0.76967 1.05512 1.01848 1.86026 1.22791 1.26271 1.88697 1.18944 0.92352 0.84206 0.97740 1.21204 1.00673 0.91579 1.07852 1.18975 0.93979 0.91695 1.00777 1.22288 1.03507 0.98586 0.95533 1.84714 1.62441 1.17704 1.11126 1.26630 1.11288 1.03303 0.88399 1.74189 1.13848 1.06437 1.20778 1.73864 1.27409 1.14774 1.13589 1.21811 0.92652 0.90023 0.87742 1.19398 1.29869 1.08783 0.96839 0.89789 1.27748 0.89528 0.89917 1.10597 1.70664 1.34287 1.22961 1.16801 0.82211 0.77218 0.73628 0.69529 1.22596 1.20421 1.22235 1.46203 1.45990 1.21143 1.08129 1.21907 1.03866 1.03965 0.75226 1.21195 0.92398 0.99997 1.02264 1.21164 1.01189 0.90001 0.97523 1.19698 0.90602 0.97502 1.04426 1.20641 0.99034 0.93237 1.02919 0.92343 0.85927 0.92394 0.84801 0.89037 0.88497 0.90228 0.90322 0.88350 0.89803 0.84559 0.82319 0.90640 0.89847 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.32 -6.38 9.54 -92.38 -0.88 -7.26 16 3 C 0.11 2.43 6.66 22.51 0.15 2.58 16 4 C -0.19 -4.42 8.69 22.37 0.19 -4.23 16 5 C -0.05 -1.26 5.13 -19.88 -0.10 -1.37 16 6 C -0.05 -1.48 5.35 71.24 0.38 -1.10 16 7 S 0.01 0.35 21.77 -56.49 -1.23 -0.88 16 8 C 0.08 3.49 8.09 179.18 1.45 4.94 16 9 N -0.31 -15.98 11.62 -56.17 -0.65 -16.63 16 10 N -0.45 -25.31 7.52 -55.02 -0.41 -25.72 16 11 C 0.32 17.49 7.27 133.23 0.97 18.46 16 12 C -0.51 -27.61 9.50 23.09 0.22 -27.39 16 13 H 0.08 4.41 7.46 -2.91 -0.02 4.39 16 14 C 0.04 2.32 5.52 85.29 0.47 2.79 16 15 N -0.82 -44.43 13.65 21.86 0.30 -44.13 16 16 Si 1.15 58.50 25.90 68.60 1.78 60.28 16 17 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 18 H -0.28 -14.82 6.76 99.48 0.67 -14.15 16 19 H -0.29 -15.54 7.11 99.48 0.71 -14.84 16 20 N -0.51 -23.43 3.26 -543.63 -1.77 -25.21 16 21 C 0.09 3.10 10.89 127.77 1.39 4.49 16 22 C -0.14 -2.90 9.70 22.28 0.22 -2.68 16 23 C -0.08 -1.41 9.70 22.25 0.22 -1.20 16 24 C -0.12 -2.28 5.89 -19.77 -0.12 -2.39 16 25 C -0.10 -1.39 9.79 71.24 0.70 -0.70 16 26 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.13 2.88 6.30 -2.91 -0.02 2.86 16 30 H 0.09 2.83 8.08 -2.39 -0.02 2.81 16 31 H 0.10 2.95 8.08 -2.40 -0.02 2.93 16 32 H 0.29 14.72 8.72 -92.71 -0.81 13.91 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.10 2.73 7.85 -2.39 -0.02 2.71 16 35 H 0.08 2.75 7.48 -2.39 -0.02 2.73 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.83 8.09 -2.38 -0.02 0.81 16 40 H 0.06 0.96 7.53 -2.39 -0.02 0.94 16 Total: -1.00 -69.52 351.68 5.36 -64.16 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 0.98 Total: 1.81 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 7.25 Total: -6.41 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -2.54 Total: -111.70 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.88 Total: -7.26 kcal Atomic # 14 Polarization: 58.50 SS G_CDS: 1.78 Total: 60.28 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.23 Total: -0.88 kcal Total: -69.52 5.36 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603331859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds