Wall clock time and date at job start Tue Mar 31 2020 12:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83989 * 2 1 4 4 C 1.36110 * 107.82586 * 180.14604 * 3 2 1 5 5 N 1.39474 * 126.21192 * 179.84316 * 4 3 2 6 6 C 1.34783 * 120.00325 * 359.69791 * 5 4 3 7 7 O 1.21290 * 119.99394 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99828 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.47318 * 59.99971 * 8 6 5 10 10 C 1.53000 * 109.47410 * 299.99087 * 8 6 5 11 11 C 1.50703 * 109.46867 * 179.97438 * 8 6 5 12 12 C 1.33394 * 125.20154 * 240.00254 * 11 8 6 13 13 C 1.38424 * 114.92041 * 179.73210 * 12 11 8 14 14 C 1.33385 * 114.92103 * 359.97438 * 13 12 11 15 15 S 1.75884 * 109.59663 * 359.97438 * 14 13 12 16 16 N 1.35255 * 107.56789 * 359.58118 * 4 3 2 17 17 C 1.46506 * 126.04502 * 180.22222 * 16 4 3 18 18 C 1.50700 * 109.46742 * 90.00702 * 17 16 4 19 19 H 1.08003 * 119.99971 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99629 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99767 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47375 * 89.99523 * 22 20 18 24 24 H 1.48498 * 109.46951 * 210.00190 * 22 20 18 25 25 H 1.48502 * 109.46927 * 329.99679 * 22 20 18 26 26 N 1.30852 * 125.83942 * 179.67622 * 2 1 3 27 27 H 1.09001 * 109.46649 * 270.29875 * 1 2 3 28 28 H 1.08998 * 109.46660 * 30.29683 * 1 2 3 29 29 H 1.08990 * 109.47143 * 150.29898 * 1 2 3 30 30 H 1.08003 * 126.08472 * 359.97438 * 3 2 1 31 31 H 0.97004 * 119.99913 * 179.68926 * 5 4 3 32 32 H 1.08996 * 109.47145 * 300.00985 * 10 8 6 33 33 H 1.09002 * 109.46428 * 60.00226 * 10 8 6 34 34 H 1.08997 * 109.47670 * 180.02562 * 10 8 6 35 35 H 1.08001 * 122.53611 * 359.74990 * 12 11 8 36 36 H 1.07999 * 122.53445 * 180.02562 * 13 12 11 37 37 H 1.08000 * 125.20169 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.47139 * 210.00210 * 17 16 4 39 39 H 1.09000 * 109.47386 * 330.00776 * 17 16 4 40 40 H 0.97006 * 120.00150 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7120 -0.0033 5 7 4.7513 1.5274 -0.0075 6 6 4.6157 2.8684 -0.0148 7 8 3.5096 3.3660 -0.0181 8 6 5.8384 3.7492 -0.0187 9 1 6.4341 3.5400 -0.9072 10 6 6.6730 3.4690 1.2326 11 6 5.4154 5.1956 -0.0273 12 6 5.7235 6.0812 -0.9761 13 6 5.2176 7.3536 -0.7728 14 6 4.4983 7.5011 0.3408 15 16 4.4322 5.9719 1.2072 16 7 3.6092 -0.6405 0.0041 17 6 4.7870 -1.5117 0.0084 18 6 5.1914 -1.8027 1.4307 19 1 4.6276 -1.3805 2.2495 20 6 6.2816 -2.6070 1.6865 21 7 6.9683 -3.1206 0.6895 22 14 6.7824 -2.9684 3.4496 23 1 6.0830 -4.1900 3.9224 24 1 8.2505 -3.1824 3.5131 25 1 6.4117 -1.8197 4.3147 26 7 2.2732 -1.0607 0.0060 27 1 -0.3633 0.0054 1.0277 28 1 -0.3632 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5091 30 1 1.9902 2.1597 -0.0004 31 1 5.6359 1.1294 -0.0051 32 1 6.0772 3.6782 2.1211 33 1 6.9789 2.4228 1.2385 34 1 7.5571 4.1064 1.2301 35 1 6.3220 5.8248 -1.8378 36 1 5.3914 8.1651 -1.4639 37 1 4.0284 8.4191 0.6613 38 1 4.5497 -2.4460 -0.5002 39 1 5.6082 -1.0151 -0.5084 40 1 7.7351 -3.6868 0.8696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609969129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:37 Heat of formation + Delta-G solvation = 53.316583 kcal Electronic energy + Delta-G solvation = -24031.002375 eV Core-core repulsion = 20552.462590 eV Total energy + Delta-G solvation = -3478.539785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46513 -40.84496 -38.61429 -36.28938 -35.61417 -34.96115 -33.81282 -30.80110 -29.98156 -29.29023 -27.81570 -25.96124 -24.87721 -24.35648 -22.46447 -21.30086 -20.66963 -20.21233 -18.92035 -18.58607 -17.77276 -17.66302 -16.76970 -16.65535 -16.33879 -15.98473 -15.67996 -15.35611 -14.61409 -14.54070 -14.42509 -14.05891 -13.96020 -13.61450 -13.54384 -13.41482 -13.27420 -13.14953 -13.10407 -12.87588 -12.72556 -12.64973 -12.47479 -12.29605 -11.92044 -11.68795 -11.51001 -11.42903 -10.87215 -10.76807 -9.64166 -9.57433 -9.27425 -9.06995 -8.36665 -6.54034 0.09808 0.77555 0.79183 1.19359 1.34849 1.36131 1.39435 1.49253 1.61986 1.89692 2.05042 2.22547 2.36022 2.93915 3.37331 3.57291 3.82851 3.96677 4.16519 4.26048 4.30749 4.60859 4.64762 4.69753 4.73602 4.77549 4.80818 4.84025 4.87678 4.88813 4.95653 5.15277 5.20770 5.23314 5.23943 5.41532 5.50819 5.64129 5.76583 5.95487 6.14287 6.27278 6.56696 6.93210 7.02616 7.18133 8.69818 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.004019 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.215706 B = 6965.343151 C = 8469.319097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.308 4.308 4 C 0.301 3.699 5 N -0.636 5.636 6 C 0.518 3.482 7 O -0.525 6.525 8 C -0.024 4.024 9 H 0.147 0.853 10 C -0.146 4.146 11 C -0.176 4.176 12 C -0.132 4.132 13 C -0.143 4.143 14 C -0.219 4.219 15 S 0.088 5.912 16 N -0.366 5.366 17 C 0.272 3.728 18 C -0.556 4.556 19 H 0.046 0.954 20 C 0.030 3.970 21 N -0.913 5.913 22 Si 0.967 3.033 23 H -0.278 1.278 24 H -0.268 1.268 25 H -0.271 1.271 26 N -0.332 5.332 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.421 0.579 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 19.838 -2.163 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.340 4.340 4 C 0.078 3.922 5 N -0.284 5.284 6 C 0.306 3.694 7 O -0.399 6.399 8 C -0.047 4.047 9 H 0.165 0.835 10 C -0.204 4.204 11 C -0.293 4.293 12 C -0.163 4.163 13 C -0.173 4.173 14 C -0.354 4.354 15 S 0.353 5.647 16 N -0.152 5.152 17 C 0.154 3.846 18 C -0.594 4.594 19 H 0.064 0.936 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.791 3.209 23 H -0.204 1.204 24 H -0.192 1.192 25 H -0.196 1.196 26 N -0.157 5.157 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.184 0.816 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.200 0.800 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.951 18.307 -0.858 18.351 hybrid contribution 1.376 0.313 -0.503 1.498 sum 0.426 18.620 -1.362 18.675 Atomic orbital electron populations 1.20216 0.83995 1.04007 1.03663 1.22874 0.98708 0.90084 0.99061 1.21459 0.89142 1.00736 1.22631 1.18313 0.89561 0.82836 1.01460 1.42945 1.07545 1.05815 1.72111 1.21275 0.92415 0.80775 0.74978 1.90644 1.27899 1.73698 1.47664 1.19801 0.92987 0.87475 1.04443 0.83539 1.21922 1.00318 1.03836 0.94283 1.23936 1.06461 0.98073 1.00872 1.20429 1.03087 0.92907 0.99902 1.20413 0.99910 0.98289 0.98697 1.26001 1.07270 1.01471 1.00703 1.84591 1.51317 1.02941 1.25828 1.49163 1.06296 1.02858 1.56869 1.19231 0.78604 0.88978 0.97824 1.21387 1.13673 1.32742 0.91565 0.93561 1.25641 0.95341 0.94254 1.01940 1.69982 1.19500 1.32641 1.32919 0.85421 0.77931 0.78594 0.78946 1.20351 1.19216 1.19561 1.77298 0.86475 1.23595 1.28297 0.89740 0.88703 0.90613 0.81641 0.74061 0.92987 0.90714 0.88185 0.82210 0.81859 0.79979 0.95558 0.93284 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.36 7.21 43.07 0.31 2.67 16 3 C -0.31 -12.81 9.58 22.14 0.21 -12.60 16 4 C 0.30 12.92 7.66 131.32 1.01 13.93 16 5 N -0.64 -22.11 5.31 -308.56 -1.64 -23.75 16 6 C 0.52 16.03 7.09 87.65 0.62 16.65 16 7 O -0.53 -19.02 12.36 -3.06 -0.04 -19.06 16 8 C -0.02 -0.53 3.10 -12.29 -0.04 -0.57 16 9 H 0.15 2.34 8.08 -2.39 -0.02 2.32 16 10 C -0.15 -2.89 9.02 71.98 0.65 -2.24 16 11 C -0.18 -3.94 4.61 24.59 0.11 -3.82 16 12 C -0.13 -2.47 10.01 21.22 0.21 -2.25 16 13 C -0.14 -2.42 10.18 21.22 0.22 -2.21 16 14 C -0.22 -4.02 11.23 66.72 0.75 -3.27 16 15 S 0.09 2.10 22.17 -56.49 -1.25 0.85 16 16 N -0.37 -17.70 3.60 -348.71 -1.26 -18.96 16 17 C 0.27 14.00 6.01 85.63 0.51 14.51 16 18 C -0.56 -30.23 9.39 25.60 0.24 -29.99 16 19 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 20 C 0.03 1.59 5.46 84.66 0.46 2.05 16 21 N -0.91 -49.41 13.29 21.45 0.28 -49.12 16 22 Si 0.97 41.76 29.54 68.60 2.03 43.78 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 N -0.33 -15.93 12.56 -47.45 -0.60 -16.52 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.17 6.70 5.83 -2.91 -0.02 6.68 16 31 H 0.42 13.41 7.38 -92.71 -0.68 12.73 16 32 H 0.05 1.17 8.02 -2.39 -0.02 1.15 16 33 H 0.07 1.50 7.56 -2.39 -0.02 1.48 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 2.41 7.50 -2.39 -0.02 2.39 16 40 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -68.97 356.51 3.93 -65.04 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.38 Total: 25.87 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 6.01 Total: -8.14 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.21 Total: -108.35 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.06 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.25 Total: 0.85 kcal Total: -68.97 3.93 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609969129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.356 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds