Wall clock time and date at job start Tue Mar 31 2020 12:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32902 * 124.82577 * 2 1 4 4 C 1.44315 * 112.99531 * 179.97438 * 3 2 1 5 5 C 1.47593 * 123.32776 * 179.97438 * 4 3 2 6 6 O 1.21924 * 120.00330 * 180.02562 * 5 4 3 7 7 N 1.33925 * 119.99636 * 0.02562 * 5 4 3 8 8 C 1.32937 * 119.99514 * 180.02562 * 7 5 4 9 9 C 1.41181 * 126.38342 * 359.97438 * 8 7 5 10 10 C 1.34988 * 108.24402 * 180.02562 * 9 8 7 11 11 C 1.50705 * 125.52552 * 180.26052 * 10 9 8 12 12 N 1.36445 * 108.95026 * 359.97438 * 10 9 8 13 13 C 1.46504 * 125.85039 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47013 * 84.99986 * 13 12 10 15 15 H 1.07997 * 120.00254 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99922 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48510 * 109.46904 * 119.99536 * 18 16 14 21 21 H 1.48493 * 109.46820 * 239.99469 * 18 16 14 22 22 N 1.37455 * 126.37566 * 179.97438 * 8 7 5 23 23 H 0.97003 * 126.36764 * 359.94559 * 22 8 7 24 24 C 1.34834 * 113.34928 * 0.24056 * 4 3 2 25 25 C 1.50694 * 124.52692 * 179.75477 * 24 4 3 26 26 S 1.70456 * 110.94438 * 359.63162 * 24 4 3 27 27 H 1.09004 * 109.47231 * 90.00277 * 1 2 3 28 28 H 1.09000 * 109.47155 * 210.00166 * 1 2 3 29 29 H 1.09005 * 109.47233 * 330.00143 * 1 2 3 30 30 H 1.07999 * 123.50138 * 359.97438 * 3 2 1 31 31 H 1.08002 * 125.87827 * 0.06271 * 9 8 7 32 32 H 1.08998 * 109.47427 * 269.69219 * 11 10 9 33 33 H 1.08999 * 109.46782 * 29.69578 * 11 10 9 34 34 H 1.09003 * 109.47010 * 149.68632 * 11 10 9 35 35 H 1.09000 * 109.46761 * 205.00287 * 13 12 10 36 36 H 1.09000 * 109.47020 * 324.99799 * 13 12 10 37 37 H 0.97003 * 119.99569 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.46658 * 90.00677 * 25 24 4 39 39 H 1.09001 * 109.47416 * 209.99881 * 25 24 4 40 40 H 1.08993 * 109.47256 * 330.00454 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2659 1.0910 0.0000 4 6 3.6784 0.7951 0.0006 5 6 4.7249 1.8359 0.0002 6 8 5.9018 1.5171 0.0002 7 7 4.3818 3.1304 -0.0003 8 6 5.3244 4.0678 -0.0012 9 6 6.7197 3.8524 -0.0013 10 6 7.3329 5.0549 -0.0018 11 6 8.8234 5.2778 -0.0075 12 7 6.3846 6.0359 -0.0026 13 6 6.6420 7.4782 -0.0039 14 6 6.8522 7.9497 -1.4197 15 1 6.7989 7.2456 -2.2368 16 6 7.1125 9.2800 -1.6718 17 7 7.1769 10.1374 -0.6767 18 14 7.3723 9.8645 -3.4269 19 1 7.2489 8.7125 -4.3557 20 1 6.3483 10.8856 -3.7652 21 1 8.7265 10.4602 -3.5548 22 7 5.1221 5.4274 -0.0023 23 1 4.2648 5.8813 -0.0033 24 6 3.9476 -0.5261 -0.0042 25 6 5.3347 -1.1150 -0.0100 26 16 2.5095 -1.4410 0.0008 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.8671 2.0946 -0.0004 31 1 7.2117 2.8910 -0.0015 32 1 9.1862 5.3353 1.0187 33 1 9.3126 4.4495 -0.5201 34 1 9.0494 6.2099 -0.5256 35 1 5.7890 7.9998 0.4300 36 1 7.5346 7.6885 0.5854 37 1 7.3597 11.0734 -0.8542 38 1 5.6721 -1.2602 1.0163 39 1 5.3198 -2.0747 -0.5267 40 1 6.0155 -0.4363 -0.5238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611246509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:44 Heat of formation + Delta-G solvation = 80.250491 kcal Electronic energy + Delta-G solvation = -23403.160053 eV Core-core repulsion = 19925.788210 eV Total energy + Delta-G solvation = -3477.371843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93054 -38.97850 -36.81661 -34.41120 -33.25717 -32.81298 -32.20043 -30.78794 -29.16754 -27.56114 -26.94161 -25.22471 -23.84477 -22.86483 -21.28372 -19.93499 -19.62357 -18.20265 -17.15809 -16.97059 -16.55100 -15.40242 -15.19808 -14.99016 -14.81973 -14.40840 -14.08448 -13.56469 -13.53786 -13.08439 -13.01524 -12.92624 -12.83488 -12.78837 -12.67434 -12.39851 -12.09560 -11.88152 -11.74775 -11.40181 -11.32211 -11.30682 -11.10468 -10.77652 -10.54461 -10.35914 -9.47051 -9.33685 -8.95617 -8.88993 -8.40764 -8.28907 -8.18469 -6.95603 -6.52418 -4.68755 1.02371 1.65909 1.67987 1.99976 2.14307 2.49447 3.02159 3.12043 3.16817 3.22317 4.02838 4.22162 4.66628 4.77861 4.83126 4.97248 5.01451 5.21925 5.27337 5.47231 5.48826 5.54868 5.75362 5.78634 5.80686 5.83929 5.96371 6.04802 6.10575 6.26395 6.29631 6.42620 6.49196 6.55665 6.66719 6.68617 6.77959 7.35484 7.46555 7.49420 7.64136 7.95226 8.27834 8.41565 9.02091 9.35178 10.49545 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.002668 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.303720 B =10491.332953 C =11153.062036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.218 4.218 3 C -0.080 4.080 4 C -0.122 4.122 5 C 0.553 3.447 6 O -0.577 6.577 7 N -0.692 5.692 8 C 0.472 3.528 9 C -0.333 4.333 10 C 0.190 3.810 11 C -0.099 4.099 12 N -0.339 5.339 13 C 0.253 3.747 14 C -0.556 4.556 15 H 0.070 0.930 16 C 0.071 3.929 17 N -0.886 5.886 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.278 1.278 22 N -0.467 5.467 23 H 0.445 0.555 24 C -0.159 4.159 25 C -0.089 4.089 26 S 0.129 5.871 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.183 0.817 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -14.383 2.559 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.334 4.334 3 C -0.109 4.109 4 C -0.138 4.138 5 C 0.338 3.662 6 O -0.461 6.461 7 N -0.455 5.455 8 C 0.222 3.778 9 C -0.365 4.365 10 C 0.063 3.937 11 C -0.158 4.158 12 N -0.126 5.126 13 C 0.137 3.863 14 C -0.594 4.594 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.204 1.204 22 N -0.189 5.189 23 H 0.292 0.708 24 C -0.278 4.278 25 C -0.148 4.148 26 S 0.394 5.606 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.200 0.800 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.993 -15.341 2.620 16.677 hybrid contribution 0.462 2.204 -0.903 2.426 sum -5.531 -13.137 1.716 14.357 Atomic orbital electron populations 1.20254 0.87998 1.02761 1.02405 1.24224 0.99843 0.95880 1.13472 1.21270 0.91194 0.99278 0.99157 1.19768 0.93942 0.92263 1.07832 1.18276 0.85846 0.85998 0.76038 1.90540 1.20253 1.85093 1.50203 1.68828 1.32886 0.99981 1.43816 1.19133 0.91001 0.82767 0.84891 1.22261 0.92731 0.98756 1.22782 1.21340 0.92342 0.87738 0.92244 1.20657 0.86546 1.04912 1.03646 1.47951 0.93736 1.07199 1.63677 1.20050 0.99204 0.67465 0.99571 1.21419 1.52044 0.94339 0.91641 0.91191 1.24951 0.94004 0.96021 0.98468 1.69907 1.46890 1.04024 1.31432 0.86259 0.78228 0.78986 0.83074 1.19357 1.20490 1.20355 1.44536 1.00633 1.03432 1.70316 0.70778 1.24068 1.01090 0.96856 1.05808 1.20577 0.90862 1.00280 1.03032 1.82718 0.94573 1.09614 1.73719 0.91156 0.91747 0.90695 0.83043 0.79986 0.89827 0.89315 0.88987 0.93098 0.91423 0.91869 0.90938 0.92439 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.35 36.00 0.37 -0.33 16 2 C -0.22 -2.80 6.45 -36.15 -0.23 -3.03 16 3 C -0.08 -1.23 9.93 -39.04 -0.39 -1.61 16 4 C -0.12 -2.14 5.95 -104.90 -0.62 -2.77 16 5 C 0.55 11.21 7.71 -12.82 -0.10 11.11 16 6 O -0.58 -12.18 10.93 4.99 0.05 -12.12 16 7 N -0.69 -14.01 10.17 -12.27 -0.12 -14.13 16 8 C 0.47 9.35 8.07 -155.26 -1.25 8.10 16 9 C -0.33 -6.37 9.41 -39.62 -0.37 -6.75 16 10 C 0.19 3.37 6.93 -81.69 -0.57 2.80 16 11 C -0.10 -1.38 9.92 36.01 0.36 -1.02 16 12 N -0.34 -6.44 3.63 -58.03 -0.21 -6.65 16 13 C 0.25 5.28 5.71 -5.19 -0.03 5.25 16 14 C -0.56 -13.08 9.39 -34.44 -0.32 -13.41 16 15 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -22.23 13.29 55.43 0.74 -21.49 16 18 Si 0.91 19.06 29.54 -169.99 -5.02 14.04 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 N -0.47 -8.53 7.38 31.33 0.23 -8.30 16 23 H 0.44 7.12 8.96 -182.55 -1.64 5.48 16 24 C -0.16 -2.44 6.30 -35.52 -0.22 -2.67 16 25 C -0.09 -1.24 9.58 36.00 0.34 -0.90 16 26 S 0.13 1.59 22.95 -107.50 -2.47 -0.88 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.15 2.27 8.04 -52.49 -0.42 1.85 16 31 H 0.18 3.58 5.77 -52.49 -0.30 3.28 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.37 7.81 -51.93 -0.41 0.97 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 37 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.71 5.89 -51.93 -0.31 1.40 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -28.42 355.98 -10.98 -39.41 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.41 Total: 8.38 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.14 Total: -3.62 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.63 Total: -50.57 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.05 Total: -12.12 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.42 -10.98 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611246509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.657 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds