Wall clock time and date at job start Tue Mar 31 2020 12:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30851 * 126.19530 * 2 1 4 4 C 1.34607 * 107.29021 * 180.16946 * 3 2 1 5 5 C 1.47699 * 126.03027 * 179.89596 * 4 3 2 6 6 O 1.21478 * 119.99982 * 179.68917 * 5 4 3 7 7 O 1.34725 * 120.00013 * 359.68498 * 5 4 3 8 8 C 1.45206 * 117.00365 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46590 * 30.00371 * 8 7 5 10 10 C 1.52997 * 109.47226 * 270.00595 * 8 7 5 11 11 C 1.50697 * 109.47178 * 150.00077 * 8 7 5 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46980 * 89.99582 * 15 13 11 17 17 H 1.48493 * 109.47135 * 209.99651 * 15 13 11 18 18 H 1.48498 * 109.47274 * 330.00048 * 15 13 11 19 19 N 1.31622 * 107.93721 * 359.63247 * 4 3 2 20 20 N 1.28846 * 108.69848 * 0.22346 * 19 4 3 21 21 C 1.40180 * 125.76881 * 180.02562 * 20 19 4 22 22 C 1.38846 * 120.04481 * 144.70469 * 21 20 19 23 23 C 1.38095 * 119.95769 * 179.72170 * 22 21 20 24 24 C 1.38498 * 120.04127 * 0.55619 * 23 22 21 25 25 F 1.35100 * 119.95667 * 179.74704 * 24 23 22 26 26 C 1.38493 * 120.08527 * 359.71542 * 24 23 22 27 27 C 1.38098 * 120.04240 * 0.02562 * 26 24 23 28 28 H 1.08997 * 109.47130 * 270.23292 * 1 2 3 29 29 H 1.09001 * 109.47494 * 30.23378 * 1 2 3 30 30 H 1.09006 * 109.47165 * 150.23339 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99431 * 10 8 7 32 32 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.47261 * 59.99603 * 10 8 7 34 34 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.02404 * 0.02562 * 22 21 20 36 36 H 1.07997 * 119.98128 * 180.25420 * 23 22 21 37 37 H 1.07994 * 119.97939 * 179.97438 * 26 24 23 38 38 H 1.07995 * 120.02163 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2797 1.0560 0.0000 4 6 3.5532 0.6199 -0.0038 5 6 4.7621 1.4684 -0.0074 6 8 5.8636 0.9563 -0.0050 7 8 4.6432 2.8104 -0.0134 8 6 5.8736 3.5813 -0.0160 9 1 6.6543 3.0177 -0.5270 10 6 6.3050 3.8584 1.4255 11 6 5.6465 4.8875 -0.7323 12 1 4.6745 5.1157 -1.1441 13 6 6.6796 5.7913 -0.8621 14 7 7.8632 5.5137 -0.3603 15 14 6.3980 7.4109 -1.7494 16 1 5.9517 8.4383 -0.7744 17 1 7.6636 7.8517 -2.3887 18 1 5.3544 7.2301 -2.7903 19 7 3.5310 -0.6962 0.0020 20 7 2.3037 -1.0886 0.0044 21 6 1.8697 -2.4215 0.0110 22 6 0.7220 -2.7754 0.7077 23 6 0.2928 -4.0880 0.7082 24 6 1.0128 -5.0531 0.0240 25 9 0.5942 -6.3376 0.0299 26 6 2.1610 -4.7031 -0.6669 27 6 2.5904 -3.3906 -0.6742 28 1 -0.3633 0.0042 1.0276 29 1 -0.3634 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5102 31 1 5.5243 4.4220 1.9364 32 1 7.2289 4.4367 1.4234 33 1 6.4693 2.9135 1.9436 34 1 8.5901 6.1494 -0.4519 35 1 0.1624 -2.0238 1.2447 36 1 -0.6021 -4.3629 1.2466 37 1 2.7213 -5.4571 -1.1995 38 1 3.4855 -3.1179 -1.2133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:26 Heat of formation + Delta-G solvation = -3.417168 kcal Electronic energy + Delta-G solvation = -25342.807735 eV Core-core repulsion = 21295.594614 eV Total energy + Delta-G solvation = -4047.213121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.47086 -43.81019 -39.75311 -39.22839 -35.76496 -34.70133 -33.57573 -33.22372 -31.78076 -30.13794 -29.48058 -28.32705 -25.53439 -25.21688 -23.98915 -22.96885 -21.74242 -20.92519 -19.78531 -18.64962 -18.19888 -17.34389 -17.14470 -16.53277 -16.31751 -16.13290 -15.66555 -15.17279 -14.88678 -14.66327 -14.36450 -14.20956 -13.90798 -13.77593 -13.44461 -13.33747 -12.97278 -12.80797 -12.23117 -12.08308 -11.91728 -11.60461 -11.24645 -11.06664 -10.87404 -10.79585 -10.50488 -10.37007 -10.26647 -10.00945 -9.85807 -9.80513 -9.55197 -8.92519 -8.89829 -8.47040 -6.15863 -4.22291 0.09762 0.49857 1.40727 1.82284 2.01986 2.83768 3.16250 3.28176 3.33691 3.39954 3.54517 3.58748 3.86316 3.97541 4.12390 4.27044 4.34406 4.48699 4.58176 4.93754 5.03966 5.08939 5.16392 5.18606 5.27292 5.37898 5.45746 5.48679 5.62582 5.89100 6.03337 6.25204 6.47288 6.62849 6.89809 6.91762 7.08671 7.57782 7.71976 7.82626 7.95567 8.13786 8.58535 8.88606 9.42462 10.91810 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.002442 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.135409 B =11465.499362 C =11892.903376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.215 3.785 3 N -0.447 5.447 4 C 0.188 3.812 5 C 0.554 3.446 6 O -0.493 6.493 7 O -0.328 6.328 8 C 0.215 3.785 9 H 0.050 0.950 10 C -0.156 4.156 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.914 3.086 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 N -0.250 5.250 20 N -0.259 5.259 21 C 0.120 3.880 22 C -0.087 4.087 23 C -0.134 4.134 24 C 0.109 3.891 25 F -0.132 7.132 26 C -0.135 4.135 27 C -0.066 4.066 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 -20.230 1.471 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 N -0.172 5.172 4 C -0.090 4.090 5 C 0.393 3.607 6 O -0.378 6.378 7 O -0.242 6.242 8 C 0.163 3.837 9 H 0.067 0.933 10 C -0.214 4.214 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.741 3.259 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 N -0.088 5.088 20 N -0.049 5.049 21 C 0.029 3.971 22 C -0.108 4.108 23 C -0.154 4.154 24 C 0.089 3.911 25 F -0.111 7.111 26 C -0.154 4.154 27 C -0.086 4.086 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.344 -20.206 1.490 26.671 hybrid contribution -0.080 0.459 -0.356 0.586 sum -17.424 -19.747 1.135 26.360 Atomic orbital electron populations 1.20515 0.82938 1.05431 1.04541 1.25184 0.97729 0.81429 1.01579 1.71522 1.00270 1.26909 1.18461 1.22879 0.92198 0.87541 1.06403 1.18760 0.84400 0.83273 0.74300 1.90840 1.26161 1.75364 1.45478 1.86648 1.42276 1.14393 1.80891 1.20825 0.78655 0.89149 0.95091 0.93252 1.22186 1.03609 0.99237 0.96334 1.21016 0.98257 1.00201 1.36168 0.91036 1.24886 0.94633 0.98833 0.95641 1.69897 1.01646 1.36402 1.44826 0.86235 0.77694 0.82334 0.79649 1.20324 1.21002 1.19579 1.74479 1.00603 1.13769 1.19926 1.44467 1.03711 1.06097 1.50658 1.17554 0.97188 0.80389 1.01940 1.20971 0.95343 0.96857 0.97587 1.21002 1.01624 0.91462 1.01289 1.17817 0.94907 0.79097 0.99275 1.91545 1.89628 1.35066 1.94828 1.21115 0.96296 0.96947 1.01067 1.21010 0.99727 0.91076 0.96752 0.88792 0.87784 0.89628 0.94170 0.87994 0.96405 0.92372 0.83316 0.83140 0.83232 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 8.67 36.01 0.31 -0.21 16 2 C 0.21 2.81 7.79 -155.25 -1.21 1.60 16 3 N -0.45 -8.05 11.42 -8.49 -0.10 -8.15 16 4 C 0.19 3.80 7.99 -156.28 -1.25 2.56 16 5 C 0.55 13.24 7.95 34.60 0.27 13.51 16 6 O -0.49 -12.65 16.34 -19.25 -0.31 -12.97 16 7 O -0.33 -8.50 9.87 -40.56 -0.40 -8.90 16 8 C 0.21 5.98 2.56 -27.89 -0.07 5.91 16 9 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 10 C -0.16 -4.07 9.33 37.16 0.35 -3.73 16 11 C -0.52 -14.91 8.90 -34.44 -0.31 -15.22 16 12 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 15 Si 0.91 21.41 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 N -0.25 -4.45 11.76 32.06 0.38 -4.07 16 20 N -0.26 -3.50 3.47 -7.99 -0.03 -3.52 16 21 C 0.12 1.17 6.22 -83.59 -0.52 0.65 16 22 C -0.09 -0.56 8.25 -39.41 -0.33 -0.88 16 23 C -0.13 -0.72 10.02 -39.54 -0.40 -1.11 16 24 C 0.11 0.72 7.30 -39.39 -0.29 0.44 16 25 F -0.13 -0.97 17.27 2.25 0.04 -0.93 16 26 C -0.13 -0.91 10.02 -39.54 -0.40 -1.31 16 27 C -0.07 -0.58 9.70 -39.40 -0.38 -0.96 16 28 H 0.09 0.43 7.72 -51.93 -0.40 0.03 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.38 6.88 -51.93 -0.36 0.03 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 2.80 6.07 -51.93 -0.32 2.48 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.15 0.65 6.08 -52.48 -0.32 0.33 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.15 1.41 8.02 -52.49 -0.42 0.99 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -34.62 340.90 -7.83 -42.44 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.84 Total: -3.39 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -4.30 Total: 2.89 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.88 Total: -40.67 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.72 Total: -21.87 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.62 -7.83 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.027 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds