Wall clock time and date at job start Tue Mar 31 2020 12:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30853 * 126.19453 * 2 1 4 4 C 1.34604 * 107.28818 * 180.02562 * 3 2 1 5 5 C 1.47695 * 126.03080 * 180.26784 * 4 3 2 6 6 O 1.21485 * 120.00522 * 179.68701 * 5 4 3 7 7 O 1.34737 * 120.00086 * 359.68137 * 5 4 3 8 8 C 1.45195 * 117.00230 * 180.02562 * 7 5 4 9 9 H 1.09010 * 109.47090 * 329.99598 * 8 7 5 10 10 C 1.52997 * 109.47648 * 89.99738 * 8 7 5 11 11 C 1.50702 * 109.47034 * 210.00390 * 8 7 5 12 12 H 1.07995 * 120.00443 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99863 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00010 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 120.00175 * 359.97438 * 13 11 8 16 16 H 1.48501 * 109.46788 * 90.00296 * 15 13 11 17 17 H 1.48496 * 109.47157 * 210.00571 * 15 13 11 18 18 H 1.48504 * 109.46872 * 330.00528 * 15 13 11 19 19 N 1.31624 * 107.93786 * 359.97438 * 4 3 2 20 20 N 1.28847 * 108.70024 * 0.02562 * 19 4 3 21 21 C 1.40180 * 125.76825 * 180.02562 * 20 19 4 22 22 C 1.38853 * 120.04143 * 144.69945 * 21 20 19 23 23 C 1.38091 * 119.95524 * 179.71615 * 22 21 20 24 24 C 1.38498 * 120.04006 * 0.56250 * 23 22 21 25 25 F 1.35104 * 119.95780 * 179.74164 * 24 23 22 26 26 C 1.38497 * 120.08567 * 359.71044 * 24 23 22 27 27 C 1.38092 * 120.04150 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47005 * 270.00463 * 1 2 3 29 29 H 1.08993 * 109.46962 * 29.99793 * 1 2 3 30 30 H 1.08997 * 109.47316 * 150.00475 * 1 2 3 31 31 H 1.08997 * 109.47480 * 180.02562 * 10 8 7 32 32 H 1.08996 * 109.47194 * 300.00459 * 10 8 7 33 33 H 1.09005 * 109.46549 * 59.99955 * 10 8 7 34 34 H 0.96998 * 120.00293 * 179.97438 * 14 13 11 35 35 H 1.08003 * 120.02125 * 359.97438 * 22 21 20 36 36 H 1.07994 * 119.98419 * 180.25129 * 23 22 21 37 37 H 1.07999 * 119.97524 * 179.97438 * 26 24 23 38 38 H 1.07993 * 120.01856 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2798 1.0560 0.0000 4 6 3.5532 0.6199 -0.0006 5 6 4.7621 1.4683 0.0048 6 8 5.8638 0.9562 0.0094 7 8 4.6433 2.8104 0.0045 8 6 5.8737 3.5812 0.0093 9 1 6.6521 3.0198 0.5263 10 6 6.3117 3.8521 -1.4314 11 6 5.6435 4.8905 0.7191 12 1 4.6697 5.1206 1.1254 13 6 6.6758 5.7953 0.8487 14 7 6.4750 6.9377 1.4685 15 14 8.3601 5.3978 0.1452 16 1 8.4392 5.8854 -1.2552 17 1 9.4070 6.0636 0.9612 18 1 8.5727 3.9283 0.1705 19 7 3.5310 -0.6962 -0.0004 20 7 2.3037 -1.0886 -0.0002 21 6 1.8697 -2.4215 0.0005 22 6 0.7216 -2.7784 0.6953 23 6 0.2924 -4.0909 0.6900 24 6 1.0127 -5.0531 0.0019 25 9 0.5942 -6.3377 0.0022 26 6 2.1612 -4.7001 -0.6869 27 6 2.5906 -3.3876 -0.6884 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 7.2356 4.4303 -1.4277 32 1 6.4782 2.9051 -1.9446 33 1 5.5333 4.4135 -1.9482 34 1 7.2014 7.5741 1.5601 35 1 0.1624 -2.0291 1.2359 36 1 -0.6027 -4.3682 1.2268 37 1 2.7218 -5.4520 -1.2225 38 1 3.4860 -3.1127 -1.2260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:28 Heat of formation + Delta-G solvation = 6.679094 kcal Electronic energy + Delta-G solvation = -25412.584529 eV Core-core repulsion = 21365.809215 eV Total energy + Delta-G solvation = -4046.775314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.50098 -43.88203 -39.84252 -39.42529 -36.00880 -34.76793 -33.63173 -33.17586 -31.82167 -30.72900 -29.95237 -28.40375 -25.70831 -25.16674 -24.03295 -23.04553 -21.85329 -20.99876 -19.92221 -18.72724 -18.25597 -17.47070 -17.32533 -16.49606 -16.44934 -16.16922 -16.06962 -15.25981 -15.18453 -14.70867 -14.40029 -14.26004 -13.94471 -13.80165 -13.47918 -13.40609 -13.04381 -12.88700 -12.68917 -12.30775 -12.15424 -11.91882 -11.66865 -11.55619 -10.93541 -10.88504 -10.57298 -10.34171 -10.19213 -9.90099 -9.86814 -9.81022 -9.65719 -9.12431 -8.97486 -8.66981 -6.20190 -4.22674 0.05293 0.46269 1.31936 1.75045 1.92869 2.79204 3.01941 3.20675 3.32951 3.35247 3.39337 3.55342 3.80306 3.93059 4.08699 4.21980 4.28511 4.44969 4.52790 4.89490 5.00133 5.05188 5.05365 5.10629 5.17869 5.34222 5.41394 5.45074 5.54842 5.77618 5.98564 6.10847 6.19414 6.27821 6.37506 6.43253 6.56663 6.97193 7.26750 7.47199 7.77290 8.19851 8.53908 8.88164 9.35938 10.91802 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.002548 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.749470 B =10985.369529 C =11566.286486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.217 3.783 3 N -0.445 5.445 4 C 0.186 3.814 5 C 0.556 3.444 6 O -0.494 6.494 7 O -0.313 6.313 8 C 0.191 3.809 9 H 0.049 0.951 10 C -0.171 4.171 11 C -0.523 4.523 12 H 0.090 0.910 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.878 3.122 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.261 1.261 19 N -0.249 5.249 20 N -0.257 5.257 21 C 0.119 3.881 22 C -0.086 4.086 23 C -0.134 4.134 24 C 0.110 3.890 25 F -0.132 7.132 26 C -0.135 4.135 27 C -0.066 4.066 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.269 0.731 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -24.139 -4.285 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 N -0.170 5.170 4 C -0.092 4.092 5 C 0.395 3.605 6 O -0.379 6.379 7 O -0.226 6.226 8 C 0.137 3.863 9 H 0.067 0.933 10 C -0.228 4.228 11 C -0.561 4.561 12 H 0.108 0.892 13 C -0.123 4.123 14 N -0.524 5.524 15 Si 0.707 3.293 16 H -0.199 1.199 17 H -0.216 1.216 18 H -0.186 1.186 19 N -0.086 5.086 20 N -0.048 5.048 21 C 0.028 3.972 22 C -0.107 4.107 23 C -0.153 4.153 24 C 0.090 3.910 25 F -0.110 7.110 26 C -0.155 4.155 27 C -0.086 4.086 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.881 -24.013 -4.217 28.563 hybrid contribution 0.891 -0.387 -0.362 1.037 sum -13.989 -24.400 -4.580 28.496 Atomic orbital electron populations 1.20532 0.82830 1.05471 1.04667 1.25204 0.97779 0.81329 1.01390 1.71535 1.00160 1.26905 1.18373 1.22701 0.92092 0.87526 1.06899 1.18793 0.84598 0.83094 0.74014 1.90840 1.26197 1.75338 1.45567 1.86673 1.40393 1.14494 1.81065 1.21098 0.80236 0.90860 0.94072 0.93330 1.22544 1.01438 1.00175 0.98682 1.20757 1.00459 0.98273 1.36614 0.89201 1.24713 0.98348 0.94509 0.94709 1.69831 1.33053 1.07932 1.41578 0.86990 0.84049 0.79510 0.78780 1.19915 1.21636 1.18617 1.74465 1.00731 1.13636 1.19806 1.44469 1.03656 1.06161 1.50520 1.17551 0.97238 0.80341 1.02052 1.20982 0.95297 0.96862 0.97525 1.21011 1.01638 0.91476 1.01208 1.17823 0.94872 0.79119 0.99200 1.91549 1.89623 1.35040 1.94819 1.21112 0.96311 0.96914 1.01120 1.20988 0.99695 0.91112 0.96772 0.88673 0.87712 0.89600 0.92312 0.94297 0.91493 0.92037 0.83255 0.83087 0.83231 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 8.67 36.01 0.31 -0.19 16 2 C 0.22 2.74 7.79 -155.25 -1.21 1.53 16 3 N -0.44 -7.78 11.42 -8.49 -0.10 -7.88 16 4 C 0.19 3.61 7.99 -156.28 -1.25 2.36 16 5 C 0.56 12.61 7.95 34.59 0.27 12.88 16 6 O -0.49 -11.88 16.34 -19.25 -0.31 -12.20 16 7 O -0.31 -7.75 9.87 -40.59 -0.40 -8.15 16 8 C 0.19 4.98 2.16 -27.88 -0.06 4.92 16 9 H 0.05 1.32 6.22 -51.92 -0.32 0.99 16 10 C -0.17 -4.00 9.03 37.16 0.34 -3.66 16 11 C -0.52 -15.32 9.48 -34.44 -0.33 -15.64 16 12 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 13 C 0.08 2.34 5.45 -17.82 -0.10 2.24 16 14 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 15 Si 0.88 21.81 24.37 -169.99 -4.14 17.67 16 16 H -0.27 -6.47 6.87 56.52 0.39 -6.09 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 19 N -0.25 -4.23 11.76 32.06 0.38 -3.85 16 20 N -0.26 -3.33 3.47 -7.98 -0.03 -3.36 16 21 C 0.12 1.10 6.22 -83.59 -0.52 0.58 16 22 C -0.09 -0.53 8.25 -39.41 -0.33 -0.85 16 23 C -0.13 -0.67 10.02 -39.54 -0.40 -1.07 16 24 C 0.11 0.69 7.30 -39.39 -0.29 0.40 16 25 F -0.13 -0.93 17.27 2.25 0.04 -0.89 16 26 C -0.14 -0.86 10.02 -39.54 -0.40 -1.25 16 27 C -0.07 -0.54 9.70 -39.41 -0.38 -0.93 16 28 H 0.09 0.43 7.72 -51.93 -0.40 0.03 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.35 6.87 -51.93 -0.36 0.00 16 31 H 0.06 1.38 3.27 -51.93 -0.17 1.21 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.15 0.61 6.08 -52.48 -0.32 0.29 16 36 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.15 1.31 8.02 -52.49 -0.42 0.88 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -35.47 334.07 -6.79 -42.26 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.71 Total: -3.80 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.33 Total: 1.32 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.03 Total: -41.24 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.72 Total: -20.35 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.47 -6.79 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.941 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds