Wall clock time and date at job start Tue Mar 31 2020 12:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.37487 * 122.44504 * 265.02361 * 4 3 2 6 6 C 1.36652 * 113.29297 * 179.97438 * 5 4 3 7 7 C 1.46566 * 125.46005 * 179.97438 * 6 5 4 8 8 O 1.21733 * 119.99910 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00437 * 180.27323 * 7 6 5 10 10 C 1.40532 * 120.00460 * 179.72360 * 9 7 6 11 11 C 1.40664 * 126.08307 * 0.02815 * 10 9 7 12 12 N 1.30901 * 108.39271 * 179.97438 * 11 10 9 13 13 N 1.40074 * 108.40579 * 359.97438 * 12 11 10 14 14 C 1.37319 * 126.06685 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00119 * 179.97438 * 14 13 12 16 16 C 1.38986 * 119.99907 * 359.97438 * 14 13 12 17 17 N 1.31296 * 120.00458 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46998 * 90.00239 * 18 16 14 20 20 H 1.48503 * 109.47411 * 209.99750 * 18 16 14 21 21 H 1.48495 * 109.47509 * 330.00028 * 18 16 14 22 22 C 1.35689 * 126.08616 * 179.71552 * 10 9 7 23 23 S 1.75836 * 109.08350 * 0.22631 * 6 5 4 24 24 C 1.33810 * 122.45535 * 84.99868 * 4 3 2 25 25 C 1.50704 * 124.51653 * 0.02562 * 24 4 3 26 26 H 1.09009 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47369 * 299.99863 * 1 2 3 28 28 H 1.08997 * 109.47109 * 60.00553 * 1 2 3 29 29 H 1.09006 * 109.47271 * 239.99863 * 2 1 3 30 30 H 1.09002 * 109.47014 * 119.99904 * 2 1 3 31 31 H 1.08997 * 109.47307 * 59.99637 * 3 2 1 32 32 H 1.09002 * 109.47071 * 299.99870 * 3 2 1 33 33 H 1.08001 * 123.35436 * 0.02562 * 5 4 3 34 34 H 0.97000 * 119.99314 * 359.72897 * 9 7 6 35 35 H 1.08007 * 125.80849 * 359.97438 * 11 10 9 36 36 H 0.96998 * 120.00700 * 180.02562 * 17 16 14 37 37 H 1.08000 * 126.24593 * 0.02562 * 22 10 9 38 38 H 1.08997 * 109.46629 * 90.00434 * 25 24 4 39 39 H 1.09002 * 109.46636 * 209.99856 * 25 24 4 40 40 H 1.08998 * 109.47145 * 330.00014 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2850 1.5430 1.1550 6 6 5.6341 1.5237 0.9379 7 6 6.6638 1.6145 1.9769 8 8 6.3413 1.7175 3.1462 9 7 7.9679 1.5900 1.6373 10 6 8.9553 1.6829 2.6330 11 6 8.7284 1.8043 4.0159 12 7 9.8877 1.8629 4.6210 13 7 10.8966 1.7809 3.6528 14 6 12.2489 1.8071 3.8902 15 1 12.9433 1.7363 3.0661 16 6 12.7239 1.9247 5.1911 17 7 11.8798 2.0113 6.1930 18 14 14.5635 1.9595 5.5140 19 1 15.0463 3.3633 5.4753 20 1 14.8425 1.3769 6.8512 21 1 15.2641 1.1661 4.4725 22 6 10.2971 1.6655 2.4320 23 16 5.9366 1.3797 -0.7882 24 6 4.2646 1.3443 -1.1258 25 6 3.6744 1.2241 -2.5072 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8427 1.6279 2.1366 34 1 8.2249 1.5083 0.7055 35 1 7.7621 1.8427 4.4967 36 1 12.2113 2.0937 7.1008 37 1 10.7991 1.5782 1.4797 38 1 3.5326 2.2189 -2.9294 39 1 4.3510 0.6528 -3.1428 40 1 2.7131 0.7138 -2.4486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747438630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:19 Heat of formation + Delta-G solvation = 61.335160 kcal Electronic energy + Delta-G solvation = -22977.144756 eV Core-core repulsion = 19498.952682 eV Total energy + Delta-G solvation = -3478.192073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.95753 -39.15514 -38.19785 -34.44630 -34.17970 -33.17429 -32.10131 -30.25735 -28.88245 -27.82357 -26.00102 -24.76550 -23.46652 -22.08262 -21.01162 -20.33393 -19.49468 -18.62172 -17.99625 -17.04918 -16.39119 -15.46330 -15.14037 -14.97326 -14.84825 -14.78646 -14.22133 -14.04851 -13.60499 -13.49959 -13.23153 -13.17142 -12.88769 -12.87077 -12.33963 -12.08470 -11.98088 -11.68542 -11.54513 -11.41742 -11.35759 -11.24883 -10.96261 -10.93422 -10.76103 -10.53316 -10.19598 -9.34228 -9.17693 -8.81590 -8.66393 -8.47033 -8.05722 -6.70327 -6.55619 -4.22387 0.52549 1.42250 1.83675 2.32768 2.95111 3.05161 3.10502 3.32356 3.55168 3.76713 3.87989 4.45209 4.57136 4.64346 4.75520 4.78808 4.89219 4.95199 5.02421 5.17867 5.23001 5.29165 5.35777 5.43244 5.56246 5.57851 5.65468 5.76441 5.85063 5.93631 6.06861 6.24234 6.25955 6.38967 6.46681 6.89313 6.95200 7.09628 7.22990 7.85623 8.14185 8.26133 8.61132 8.80967 9.37531 9.66585 10.40354 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.035260 B = 0.002367 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.906057 B =11825.279499 C =12476.576539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.116 4.116 5 C -0.057 4.057 6 C -0.242 4.242 7 C 0.571 3.429 8 O -0.525 6.525 9 N -0.617 5.617 10 C -0.060 4.060 11 C -0.030 4.030 12 N -0.260 5.260 13 N -0.141 5.141 14 C -0.322 4.322 15 H 0.117 0.883 16 C 0.045 3.955 17 N -0.769 5.769 18 Si 0.935 3.065 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.083 4.083 23 S 0.186 5.814 24 C -0.205 4.205 25 C -0.083 4.083 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.394 0.606 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 -2.225 -16.995 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.098 4.098 4 C -0.129 4.129 5 C -0.090 4.090 6 C -0.363 4.363 7 C 0.357 3.643 8 O -0.403 6.403 9 N -0.258 5.258 10 C -0.165 4.165 11 C -0.206 4.206 12 N -0.091 5.091 13 N 0.091 4.909 14 C -0.454 4.454 15 H 0.134 0.866 16 C -0.172 4.172 17 N -0.395 5.395 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.234 4.234 23 S 0.454 5.546 24 C -0.324 4.324 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.227 0.773 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.136 -2.098 -15.675 21.211 hybrid contribution -0.726 -0.026 -0.370 0.815 sum -14.862 -2.124 -16.044 21.973 Atomic orbital electron populations 1.21785 0.95721 1.01667 1.01809 1.21519 0.95506 0.96255 1.02529 1.20321 0.89248 0.97327 1.02858 1.18614 0.97262 1.05638 0.91371 1.20583 0.90949 0.97672 0.99767 1.24622 0.98131 1.16932 0.96590 1.16763 0.81238 0.79058 0.87287 1.90726 1.81086 1.50474 1.18053 1.42351 1.04211 1.70511 1.08725 1.17229 0.86662 1.23738 0.88913 1.24130 0.98223 1.07599 0.90633 1.78262 0.92957 1.25636 1.12203 1.44560 1.05456 1.38655 1.02207 1.19881 0.77738 1.52900 0.94921 0.86571 1.25654 1.00929 0.95503 0.95093 1.70215 1.34761 1.34888 0.99685 0.85818 0.80560 0.79061 0.78648 1.19581 1.20078 1.18798 1.21247 0.91267 1.19717 0.91160 1.82930 1.03498 1.68608 0.99520 1.23919 0.98311 1.09969 1.00193 1.20372 1.01036 1.02674 0.90089 0.92728 0.92604 0.92819 0.91953 0.91627 0.90812 0.91070 0.83057 0.77333 0.80641 0.91427 0.83617 0.90678 0.91272 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.12 -0.92 5.85 -26.74 -0.16 -1.07 16 3 C -0.06 -0.48 4.82 -27.88 -0.13 -0.61 16 4 C -0.12 -1.25 5.04 -106.45 -0.54 -1.79 16 5 C -0.06 -0.77 9.78 -40.43 -0.40 -1.16 16 6 C -0.24 -3.63 6.45 -36.80 -0.24 -3.87 16 7 C 0.57 10.98 7.75 -12.90 -0.10 10.88 16 8 O -0.52 -11.93 13.99 5.16 0.07 -11.86 16 9 N -0.62 -11.83 5.46 -11.21 -0.06 -11.89 16 10 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 11 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 12 N -0.26 -7.67 10.40 30.80 0.32 -7.35 16 13 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 14 C -0.32 -8.58 10.25 -14.82 -0.15 -8.73 16 15 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16 16 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.66 11.81 55.49 0.66 -21.00 16 18 Si 0.94 19.02 29.55 -169.99 -5.02 13.99 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 23 S 0.19 2.07 22.10 -107.50 -2.38 -0.30 16 24 C -0.20 -2.05 6.28 -35.86 -0.23 -2.27 16 25 C -0.08 -0.57 9.71 36.01 0.35 -0.22 16 26 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.46 7.24 -51.93 -0.38 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.50 7.46 -51.93 -0.39 0.12 16 33 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.39 6.10 7.94 -40.82 -0.32 5.78 16 35 H 0.18 4.70 5.91 -52.48 -0.31 4.39 16 36 H 0.28 7.07 8.31 -40.82 -0.34 6.74 16 37 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.46 6.40 -51.93 -0.33 0.13 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -33.29 353.09 -8.48 -41.77 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.08 Total: 8.83 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.27 Total: -13.54 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.87 Total: -44.21 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.38 Total: -0.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.29 -8.48 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.107 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds