Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.37487 * 122.44504 * 265.02361 * 4 3 2 6 6 C 1.36652 * 113.29297 * 179.97438 * 5 4 3 7 7 C 1.46566 * 125.46005 * 179.97438 * 6 5 4 8 8 O 1.21733 * 119.99910 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00437 * 180.27323 * 7 6 5 10 10 C 1.40532 * 120.00460 * 179.72360 * 9 7 6 11 11 C 1.40664 * 126.08307 * 0.02815 * 10 9 7 12 12 N 1.30901 * 108.39271 * 179.97438 * 11 10 9 13 13 N 1.40074 * 108.40579 * 359.97438 * 12 11 10 14 14 C 1.37319 * 126.06685 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00119 * 179.97438 * 14 13 12 16 16 C 1.38986 * 119.99907 * 359.97438 * 14 13 12 17 17 N 1.31296 * 120.00458 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46998 * 90.00239 * 18 16 14 20 20 H 1.48503 * 109.47411 * 209.99750 * 18 16 14 21 21 H 1.48495 * 109.47509 * 330.00028 * 18 16 14 22 22 C 1.35689 * 126.08616 * 179.71552 * 10 9 7 23 23 S 1.75836 * 109.08350 * 0.22631 * 6 5 4 24 24 C 1.33810 * 122.45535 * 84.99868 * 4 3 2 25 25 C 1.50704 * 124.51653 * 0.02562 * 24 4 3 26 26 H 1.09009 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47369 * 299.99863 * 1 2 3 28 28 H 1.08997 * 109.47109 * 60.00553 * 1 2 3 29 29 H 1.09006 * 109.47271 * 239.99863 * 2 1 3 30 30 H 1.09002 * 109.47014 * 119.99904 * 2 1 3 31 31 H 1.08997 * 109.47307 * 59.99637 * 3 2 1 32 32 H 1.09002 * 109.47071 * 299.99870 * 3 2 1 33 33 H 1.08001 * 123.35436 * 0.02562 * 5 4 3 34 34 H 0.97000 * 119.99314 * 359.72897 * 9 7 6 35 35 H 1.08007 * 125.80849 * 359.97438 * 11 10 9 36 36 H 0.96998 * 120.00700 * 180.02562 * 17 16 14 37 37 H 1.08000 * 126.24593 * 0.02562 * 22 10 9 38 38 H 1.08997 * 109.46629 * 90.00434 * 25 24 4 39 39 H 1.09002 * 109.46636 * 209.99856 * 25 24 4 40 40 H 1.08998 * 109.47145 * 330.00014 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2850 1.5430 1.1550 6 6 5.6341 1.5237 0.9379 7 6 6.6638 1.6145 1.9769 8 8 6.3413 1.7175 3.1462 9 7 7.9679 1.5900 1.6373 10 6 8.9553 1.6829 2.6330 11 6 8.7284 1.8043 4.0159 12 7 9.8877 1.8629 4.6210 13 7 10.8966 1.7809 3.6528 14 6 12.2489 1.8071 3.8902 15 1 12.9433 1.7363 3.0661 16 6 12.7239 1.9247 5.1911 17 7 11.8798 2.0113 6.1930 18 14 14.5635 1.9595 5.5140 19 1 15.0463 3.3633 5.4753 20 1 14.8425 1.3769 6.8512 21 1 15.2641 1.1661 4.4725 22 6 10.2971 1.6655 2.4320 23 16 5.9366 1.3797 -0.7882 24 6 4.2646 1.3443 -1.1258 25 6 3.6744 1.2241 -2.5072 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8427 1.6279 2.1366 34 1 8.2249 1.5083 0.7055 35 1 7.7621 1.8427 4.4967 36 1 12.2113 2.0937 7.1008 37 1 10.7991 1.5782 1.4797 38 1 3.5326 2.2189 -2.9294 39 1 4.3510 0.6528 -3.1428 40 1 2.7131 0.7138 -2.4486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747438630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = 40.967558 kcal Electronic energy + Delta-G solvation = -22978.027961 eV Core-core repulsion = 19498.952682 eV Total energy + Delta-G solvation = -3479.075279 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77321 -40.50227 -39.48128 -36.01272 -35.12139 -35.00579 -32.96450 -32.25263 -30.11087 -29.17164 -27.28111 -26.29390 -24.55915 -23.03103 -22.73034 -21.63640 -21.32475 -19.69236 -19.53665 -18.52526 -17.61043 -17.36251 -16.66018 -16.30115 -16.09779 -15.68160 -15.53746 -15.29164 -14.92264 -14.91790 -14.65315 -14.29843 -13.86724 -13.63467 -13.50192 -13.35310 -13.01245 -12.92708 -12.87075 -12.79343 -12.68390 -12.33325 -12.08853 -11.99170 -11.91153 -11.66373 -11.44276 -11.06134 -10.99427 -10.84114 -10.13853 -9.63943 -9.35622 -8.58249 -8.48653 -6.26440 -0.51808 0.45550 0.89642 1.18265 1.37374 1.39576 1.57972 1.72671 1.98042 2.02114 2.23383 2.55586 2.87853 3.07567 3.78655 3.84564 4.05957 4.12369 4.28825 4.32524 4.39227 4.53983 4.56174 4.66727 4.75816 4.78340 4.90457 4.93644 4.97957 5.04452 5.08724 5.12705 5.21144 5.24672 5.25501 5.35575 5.44133 5.52235 5.57418 5.92830 6.25723 6.58079 6.70013 7.21723 7.42903 7.63169 8.50835 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.035260 B = 0.002367 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.906057 B =11825.279499 C =12476.576539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.055 4.055 4 C -0.131 4.131 5 C -0.050 4.050 6 C -0.292 4.292 7 C 0.571 3.429 8 O -0.571 6.571 9 N -0.612 5.612 10 C -0.048 4.048 11 C -0.058 4.058 12 N -0.308 5.308 13 N -0.165 5.165 14 C -0.352 4.352 15 H 0.143 0.857 16 C -0.008 4.008 17 N -0.824 5.824 18 Si 1.022 2.978 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.243 1.243 22 C -0.079 4.079 23 S 0.232 5.768 24 C -0.183 4.183 25 C -0.087 4.087 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.413 0.587 35 H 0.167 0.833 36 H 0.277 0.723 37 H 0.190 0.810 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.932 -2.519 -21.018 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.084 4.084 6 C -0.412 4.412 7 C 0.360 3.640 8 O -0.452 6.452 9 N -0.255 5.255 10 C -0.154 4.154 11 C -0.233 4.233 12 N -0.140 5.140 13 N 0.067 4.933 14 C -0.483 4.483 15 H 0.161 0.839 16 C -0.220 4.220 17 N -0.452 5.452 18 Si 0.840 3.160 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.166 1.166 22 C -0.229 4.229 23 S 0.501 5.499 24 C -0.303 4.303 25 C -0.146 4.146 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.250 0.750 35 H 0.183 0.817 36 H 0.087 0.913 37 H 0.207 0.793 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.224 -2.400 -19.768 24.471 hybrid contribution -0.924 0.050 0.693 1.156 sum -15.148 -2.350 -19.074 24.471 Atomic orbital electron populations 1.21766 0.94605 1.02057 1.02327 1.21496 0.96448 0.95667 1.01992 1.20368 0.87366 0.97922 1.03746 1.18750 0.98627 1.06432 0.90505 1.20753 0.90875 0.96288 1.00502 1.24203 0.97284 1.21427 0.98301 1.17396 0.81712 0.77150 0.87732 1.90692 1.81842 1.52207 1.20484 1.42246 1.03555 1.70913 1.08806 1.17303 0.87786 1.21594 0.88681 1.24149 0.97484 1.09159 0.92542 1.78159 0.94128 1.27452 1.14250 1.44871 1.05810 1.39725 1.02929 1.20671 0.77861 1.53408 0.96395 0.83922 1.26942 1.06598 0.94088 0.94385 1.70402 1.37684 1.36774 1.00333 0.84558 0.73296 0.79455 0.78669 1.18836 1.20219 1.16572 1.21971 0.91332 1.17852 0.91783 1.82691 1.04154 1.67507 0.95525 1.24493 0.97740 1.06444 1.01664 1.20592 1.01908 1.04211 0.87859 0.92444 0.92894 0.91509 0.91253 0.93435 0.91153 0.88992 0.84343 0.75026 0.81661 0.91318 0.79262 0.88891 0.89818 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.57 5.85 30.59 0.18 -1.39 16 3 C -0.05 -0.78 4.82 29.85 0.14 -0.64 16 4 C -0.13 -2.60 5.04 -21.05 -0.11 -2.70 16 5 C -0.05 -1.35 9.78 21.72 0.21 -1.14 16 6 C -0.29 -8.73 6.45 24.07 0.16 -8.57 16 7 C 0.57 22.70 7.75 86.41 0.67 23.36 16 8 O -0.57 -27.62 13.99 -4.45 -0.06 -27.68 16 9 N -0.61 -23.57 5.46 -307.57 -1.68 -25.25 16 10 C -0.05 -2.32 6.90 37.75 0.26 -2.06 16 11 C -0.06 -3.33 10.85 85.42 0.93 -2.41 16 12 N -0.31 -19.13 10.40 -56.46 -0.59 -19.72 16 13 N -0.16 -9.35 3.74 -190.00 -0.71 -10.06 16 14 C -0.35 -18.85 10.25 84.01 0.86 -17.99 16 15 H 0.14 6.56 7.83 -2.91 -0.02 6.54 16 16 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 17 N -0.82 -48.30 11.81 21.66 0.26 -48.04 16 18 Si 1.02 38.87 29.55 68.60 2.03 40.89 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16 22 C -0.08 -3.77 11.49 83.38 0.96 -2.82 16 23 S 0.23 4.62 22.10 -56.49 -1.25 3.37 16 24 C -0.18 -3.08 6.28 24.68 0.15 -2.93 16 25 C -0.09 -0.78 9.71 71.24 0.69 -0.09 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.82 7.24 -2.38 -0.02 0.80 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.09 0.95 7.46 -2.39 -0.02 0.93 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.41 12.31 7.94 -92.71 -0.74 11.57 16 35 H 0.17 9.61 5.91 -2.91 -0.02 9.59 16 36 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.19 7.09 8.06 -2.91 -0.02 7.06 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.64 6.40 -2.39 -0.02 0.62 16 Total: -1.00 -77.81 353.09 4.63 -73.18 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.34 Total: 33.50 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 6.29 Total: -20.19 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -2.72 Total: -103.07 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.06 Total: -27.68 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.25 Total: 3.37 kcal Total: -77.81 4.63 -73.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.152 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds