Wall clock time and date at job start Tue Mar 31 2020 12:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 C 1.50698 * 109.46929 * 120.00139 * 2 1 3 5 5 N 1.30133 * 121.06100 * 299.97558 * 4 2 1 6 6 S 1.69941 * 105.76298 * 180.02562 * 5 4 2 7 7 C 1.72300 * 94.57806 * 0.02562 * 6 5 4 8 8 N 1.38316 * 127.51039 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99627 * 0.02562 * 8 7 6 10 10 C 1.50698 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 N 1.31289 * 121.06302 * 120.27173 * 4 2 1 26 26 H 1.09001 * 109.47116 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47491 * 299.99963 * 1 2 3 29 29 H 1.08997 * 109.47086 * 240.00247 * 2 1 3 30 30 H 1.09003 * 109.46438 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47462 * 299.99441 * 3 2 1 32 32 H 1.08997 * 109.47151 * 60.00286 * 3 2 1 33 33 H 0.96994 * 120.00288 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46889 * 59.99833 * 9 8 7 35 35 H 1.09004 * 109.46798 * 299.99990 * 9 8 7 36 36 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7310 -0.2835 2.4223 6 16 2.4892 -1.3549 3.5018 7 6 3.1807 -2.3322 2.2627 8 7 3.9740 -3.4543 2.4194 9 6 4.3105 -3.9317 3.7630 10 6 5.1790 -5.1586 3.6573 11 6 6.5550 -5.0281 3.6100 12 6 7.3537 -6.1505 3.5126 13 6 6.7736 -7.4114 3.4627 14 8 7.5561 -8.5166 3.3675 15 6 8.8895 -8.3309 3.4413 16 1 9.2936 -7.3305 3.4883 17 6 9.7420 -9.4244 3.4567 18 7 9.2497 -10.6431 3.4000 19 14 11.5892 -9.1671 3.5596 20 1 12.0061 -9.1357 4.9846 21 1 12.2836 -10.2810 2.8651 22 1 11.9467 -7.8799 2.9109 23 6 5.3914 -7.5390 3.5052 24 6 4.5984 -6.4129 3.6075 25 7 2.7926 -1.7765 1.1343 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.3077 -3.9252 1.6398 34 1 3.3950 -4.1792 4.3004 35 1 4.8483 -3.1515 4.3017 36 1 7.0055 -4.0473 3.6492 37 1 8.4281 -6.0478 3.4752 38 1 9.8461 -11.4080 3.4104 39 1 4.9373 -8.5178 3.4622 40 1 3.5236 -6.5117 3.6443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750025956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:22 Heat of formation + Delta-G solvation = 40.792773 kcal Electronic energy + Delta-G solvation = -22523.151205 eV Core-core repulsion = 19044.068347 eV Total energy + Delta-G solvation = -3479.082858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34302 -39.34695 -37.54919 -36.11352 -34.67803 -32.51795 -31.47714 -30.41127 -29.73275 -27.41615 -26.29732 -25.40808 -24.40685 -22.19869 -22.10985 -20.90285 -19.45546 -18.85307 -18.19698 -17.26896 -16.98381 -15.70916 -15.56078 -15.19489 -14.93499 -14.66439 -14.36867 -14.31492 -13.90652 -13.77579 -13.51281 -13.04157 -12.91388 -12.52533 -12.49691 -12.35525 -11.86113 -11.82945 -11.50658 -11.49411 -11.31981 -11.07093 -11.05766 -11.02738 -10.94938 -10.79602 -10.55676 -9.65462 -9.54752 -9.46200 -9.01222 -8.42244 -8.20362 -7.48468 -6.62277 -4.21094 0.73694 0.96797 1.69973 1.91464 2.01199 2.67185 2.87915 3.03934 3.05104 3.09128 3.82845 4.09464 4.38604 4.66616 4.81776 4.86328 4.91964 5.03409 5.05525 5.10893 5.38665 5.39903 5.45262 5.50625 5.53506 5.58694 5.62360 5.70845 5.81790 5.96835 6.00148 6.04392 6.19670 6.42610 6.48941 6.66778 6.82474 6.98869 7.10038 7.15295 7.23926 7.57750 7.76648 7.81927 8.82639 9.48816 10.54727 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002075 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.477423 B =13492.647708 C =13710.063633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 C -0.141 4.141 4 C 0.313 3.687 5 N -0.504 5.504 6 S 0.164 5.836 7 C 0.348 3.652 8 N -0.655 5.655 9 C 0.176 3.824 10 C -0.224 4.224 11 C -0.044 4.044 12 C -0.238 4.238 13 C 0.164 3.836 14 O -0.169 6.169 15 C -0.395 4.395 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.196 4.196 24 C -0.048 4.048 25 N -0.593 5.593 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 17.413 -2.614 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.199 4.199 4 C 0.023 3.977 5 N -0.338 5.338 6 S 0.298 5.702 7 C -0.032 4.032 8 N -0.293 5.293 9 C 0.054 3.946 10 C -0.225 4.225 11 C -0.063 4.063 12 C -0.257 4.257 13 C 0.108 3.892 14 O -0.070 6.070 15 C -0.471 4.471 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.489 5.489 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.215 4.215 24 C -0.067 4.067 25 N -0.329 5.329 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.184 17.495 -1.504 21.373 hybrid contribution 1.448 -0.549 -1.086 1.891 sum -10.736 16.946 -2.590 20.227 Atomic orbital electron populations 1.21814 0.93085 1.02329 1.02709 1.19793 0.96315 0.95407 0.91673 1.21812 1.01268 0.94154 1.02707 1.23058 0.91141 0.89229 0.94243 1.77454 1.29447 1.24378 1.02497 1.84933 1.46760 1.20441 1.18077 1.25300 0.92187 0.92270 0.93396 1.44702 1.49535 1.24241 1.10817 1.20394 0.98483 0.94874 0.80803 1.18918 0.93342 0.92707 1.17579 1.20633 0.92446 0.97541 0.95685 1.21157 1.00734 0.91990 1.11842 1.19464 0.91113 0.87251 0.91329 1.83976 1.18710 1.27847 1.76508 1.21385 0.77930 0.94819 1.52918 0.88780 1.25355 1.00699 0.94240 0.96160 1.70030 1.36231 0.97962 1.44692 0.85670 0.80075 0.78603 0.78883 1.19696 1.20105 1.19072 1.20214 0.90998 0.98849 1.11428 1.20523 0.98325 0.91280 0.96604 1.67379 1.23667 1.14956 1.26891 0.91543 0.92542 0.91651 0.88461 0.92547 0.91534 0.91658 0.74303 0.90774 0.90830 0.87255 0.85253 0.91720 0.86194 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.11 37.16 0.34 -0.83 16 2 C -0.01 -0.08 3.31 -91.77 -0.30 -0.38 16 3 C -0.14 -1.17 9.11 37.16 0.34 -0.84 16 4 C 0.31 4.03 6.21 -159.03 -0.99 3.04 16 5 N -0.50 -6.75 11.84 29.54 0.35 -6.40 16 6 S 0.16 2.00 23.17 -107.50 -2.49 -0.49 16 7 C 0.35 4.48 8.57 -86.35 -0.74 3.74 16 8 N -0.65 -7.71 5.69 -62.74 -0.36 -8.07 16 9 C 0.18 1.99 5.85 -5.19 -0.03 1.95 16 10 C -0.22 -3.19 5.25 -104.58 -0.55 -3.74 16 11 C -0.04 -0.70 9.69 -39.61 -0.38 -1.08 16 12 C -0.24 -4.66 9.17 -39.39 -0.36 -5.02 16 13 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 14 O -0.17 -4.52 9.76 0.05 0.00 -4.52 16 15 C -0.39 -10.41 9.49 30.89 0.29 -10.11 16 16 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -23.98 13.67 55.48 0.76 -23.22 16 19 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.20 -3.72 9.99 -39.39 -0.39 -4.11 16 24 C -0.05 -0.75 9.69 -39.60 -0.38 -1.13 16 25 N -0.59 -8.22 10.60 -14.58 -0.15 -8.38 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.10 0.91 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.42 4.99 8.59 -40.82 -0.35 4.64 16 34 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -29.31 358.13 -10.15 -39.46 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.12 Total: 5.90 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.52 Total: -14.17 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.60 Total: -46.07 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.49 Total: -0.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.31 -10.15 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750025956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.253 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds