Wall clock time and date at job start Tue Mar 31 2020 12:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 C 1.50698 * 109.46929 * 120.00139 * 2 1 3 5 5 N 1.30133 * 121.06100 * 299.97558 * 4 2 1 6 6 S 1.69941 * 105.76298 * 180.02562 * 5 4 2 7 7 C 1.72300 * 94.57806 * 0.02562 * 6 5 4 8 8 N 1.38316 * 127.51039 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99627 * 0.02562 * 8 7 6 10 10 C 1.50698 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 N 1.31289 * 121.06302 * 120.27173 * 4 2 1 26 26 H 1.09001 * 109.47116 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47491 * 299.99963 * 1 2 3 29 29 H 1.08997 * 109.47086 * 240.00247 * 2 1 3 30 30 H 1.09003 * 109.46438 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47462 * 299.99441 * 3 2 1 32 32 H 1.08997 * 109.47151 * 60.00286 * 3 2 1 33 33 H 0.96994 * 120.00288 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46889 * 59.99833 * 9 8 7 35 35 H 1.09004 * 109.46798 * 299.99990 * 9 8 7 36 36 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7310 -0.2835 2.4223 6 16 2.4892 -1.3549 3.5018 7 6 3.1807 -2.3322 2.2627 8 7 3.9740 -3.4543 2.4194 9 6 4.3105 -3.9317 3.7630 10 6 5.1790 -5.1586 3.6573 11 6 6.5550 -5.0281 3.6100 12 6 7.3537 -6.1505 3.5126 13 6 6.7736 -7.4114 3.4627 14 8 7.5561 -8.5166 3.3675 15 6 8.8895 -8.3309 3.4413 16 1 9.2936 -7.3305 3.4883 17 6 9.7420 -9.4244 3.4567 18 7 9.2497 -10.6431 3.4000 19 14 11.5892 -9.1671 3.5596 20 1 12.0061 -9.1357 4.9846 21 1 12.2836 -10.2810 2.8651 22 1 11.9467 -7.8799 2.9109 23 6 5.3914 -7.5390 3.5052 24 6 4.5984 -6.4129 3.6075 25 7 2.7926 -1.7765 1.1343 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.3077 -3.9252 1.6398 34 1 3.3950 -4.1792 4.3004 35 1 4.8483 -3.1515 4.3017 36 1 7.0055 -4.0473 3.6492 37 1 8.4281 -6.0478 3.4752 38 1 9.8461 -11.4080 3.4104 39 1 4.9373 -8.5178 3.4622 40 1 3.5236 -6.5117 3.6443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750025956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:22 Heat of formation + Delta-G solvation = 23.749168 kcal Electronic energy + Delta-G solvation = -22523.890272 eV Core-core repulsion = 19044.068347 eV Total energy + Delta-G solvation = -3479.821924 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29689 -40.87898 -38.93070 -37.27342 -35.54421 -34.33119 -32.56861 -31.85781 -31.00277 -28.05395 -27.78384 -26.79524 -25.48696 -23.68804 -23.01990 -22.28149 -20.35690 -19.91671 -19.80035 -18.88003 -18.05989 -16.77611 -16.69130 -16.35164 -16.23218 -16.01872 -15.68967 -15.48832 -15.18686 -15.06279 -14.69978 -14.41662 -14.05512 -13.72099 -13.50133 -13.36806 -13.04628 -13.01907 -12.75368 -12.56000 -12.44898 -12.35827 -12.21349 -12.13803 -12.08596 -11.88212 -11.79323 -11.22623 -10.83817 -10.64012 -10.41662 -9.84119 -9.15492 -9.08051 -8.50574 -6.18865 -0.22861 -0.00034 0.43701 0.55759 0.85713 1.35113 1.42846 1.51920 1.71531 1.86293 2.15420 2.80382 3.11776 3.28441 3.45494 3.70744 3.96633 3.97655 4.13824 4.17846 4.25564 4.35726 4.48435 4.54653 4.60573 4.75923 4.80805 4.81378 4.90862 4.94242 4.99568 5.11393 5.13605 5.22816 5.32413 5.33981 5.47198 5.53519 5.66831 5.67719 5.99154 6.12118 6.13935 6.80989 6.94246 7.72755 8.71994 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002075 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.477423 B =13492.647708 C =13710.063633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 C -0.135 4.135 4 C 0.307 3.693 5 N -0.525 5.525 6 S 0.186 5.814 7 C 0.342 3.658 8 N -0.651 5.651 9 C 0.179 3.821 10 C -0.188 4.188 11 C -0.040 4.040 12 C -0.247 4.247 13 C 0.125 3.875 14 O -0.228 6.228 15 C -0.414 4.414 16 H 0.105 0.895 17 C -0.022 4.022 18 N -0.917 5.917 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.252 1.252 23 C -0.208 4.208 24 C -0.038 4.038 25 N -0.613 5.613 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.418 0.582 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 20.828 -2.575 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.193 4.193 4 C 0.017 3.983 5 N -0.358 5.358 6 S 0.319 5.681 7 C -0.037 4.037 8 N -0.289 5.289 9 C 0.057 3.943 10 C -0.189 4.189 11 C -0.058 4.058 12 C -0.266 4.266 13 C 0.074 3.926 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.555 5.555 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.176 1.176 23 C -0.227 4.227 24 C -0.056 4.056 25 N -0.350 5.350 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.257 0.743 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.500 20.971 -1.456 24.983 hybrid contribution 1.473 -1.275 -1.080 2.227 sum -12.027 19.696 -2.536 23.217 Atomic orbital electron populations 1.21776 0.91997 1.02041 1.03488 1.19992 0.97181 0.95877 0.90556 1.21775 1.00676 0.93369 1.03489 1.23550 0.90658 0.89011 0.95033 1.77419 1.30211 1.25229 1.02957 1.84778 1.46354 1.19885 1.17076 1.25343 0.92288 0.92408 0.93673 1.44494 1.49445 1.24071 1.10845 1.20478 0.99117 0.93745 0.80958 1.19282 0.93178 0.93713 1.12715 1.20986 0.92963 0.97701 0.94178 1.21259 1.00886 0.92295 1.12203 1.20051 0.92157 0.87504 0.92889 1.83948 1.19078 1.30102 1.80241 1.21834 0.78546 0.95519 1.53050 0.87806 1.26593 1.05860 0.93760 0.95787 1.70173 1.37995 0.99002 1.48331 0.84593 0.73510 0.78969 0.79229 1.18805 1.19756 1.17582 1.20468 0.90244 1.00261 1.11762 1.20928 0.99876 0.90348 0.94479 1.67419 1.24288 1.15569 1.27718 0.89119 0.93329 0.92495 0.88123 0.93376 0.89106 0.92502 0.74311 0.88504 0.88762 0.83917 0.86221 0.91765 0.86737 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.11 71.98 0.66 -1.29 16 2 C -0.01 -0.22 3.31 -11.54 -0.04 -0.26 16 3 C -0.13 -1.96 9.11 71.98 0.66 -1.30 16 4 C 0.31 7.29 6.21 139.39 0.87 8.15 16 5 N -0.52 -12.96 11.84 -60.47 -0.72 -13.68 16 6 S 0.19 3.96 23.17 -56.49 -1.31 2.66 16 7 C 0.34 7.73 8.57 178.86 1.53 9.26 16 8 N -0.65 -12.75 5.69 -352.41 -2.01 -14.76 16 9 C 0.18 3.12 5.85 85.63 0.50 3.62 16 10 C -0.19 -4.61 5.25 -19.84 -0.10 -4.71 16 11 C -0.04 -1.14 9.69 22.25 0.22 -0.93 16 12 C -0.25 -9.65 9.17 22.39 0.21 -9.45 16 13 C 0.13 5.75 6.65 22.58 0.15 5.90 16 14 O -0.23 -13.05 9.76 -22.72 -0.22 -13.28 16 15 C -0.41 -23.04 9.49 67.92 0.64 -22.39 16 16 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 17 C -0.02 -1.20 5.49 84.84 0.47 -0.74 16 18 N -0.92 -54.75 13.67 21.62 0.30 -54.46 16 19 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 C -0.21 -7.93 9.99 22.39 0.22 -7.70 16 24 C -0.04 -1.05 9.69 22.25 0.22 -0.84 16 25 N -0.61 -15.60 10.60 -200.05 -2.12 -17.72 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 29 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.42 8.50 8.59 -92.71 -0.80 7.71 16 34 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 38 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -69.21 358.13 2.42 -66.79 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.28 Total: 23.75 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 6.19 Total: -22.67 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.55 Total: -100.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.22 Total: -13.28 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.66 kcal Total: -69.21 2.42 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750025956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.539 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds