Wall clock time and date at job start Tue Mar 31 2020 12:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33388 * 125.20127 * 2 1 4 4 C 1.38418 * 114.91929 * 180.02562 * 3 2 1 5 5 C 1.33394 * 114.92435 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.20285 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47378 * 89.99776 * 6 5 4 8 8 C 1.53003 * 109.46988 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46795 * 179.97438 * 8 7 6 10 10 O 1.21305 * 120.00153 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99807 * 180.02562 * 9 8 7 12 12 C 1.40596 * 120.00051 * 180.02562 * 11 9 8 13 13 C 1.40651 * 126.08023 * 359.68531 * 12 11 9 14 14 N 1.30908 * 108.38815 * 179.81994 * 13 12 11 15 15 N 1.40076 * 108.40470 * 0.44208 * 14 13 12 16 16 C 1.37320 * 126.07253 * 179.69373 * 15 14 13 17 17 H 1.07992 * 120.00349 * 174.16010 * 16 15 14 18 18 C 1.38990 * 119.99908 * 354.16681 * 16 15 14 19 19 N 1.31299 * 119.99589 * 5.93240 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 185.93791 * 18 16 15 21 21 H 1.48497 * 109.47440 * 94.97521 * 20 18 16 22 22 H 1.48502 * 109.47111 * 214.97514 * 20 18 16 23 23 H 1.48503 * 109.46801 * 334.97494 * 20 18 16 24 24 C 1.35678 * 126.08579 * 180.02562 * 12 11 9 25 25 S 1.75878 * 125.20381 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47099 * 89.99971 * 1 2 3 27 27 H 1.09001 * 109.47173 * 210.00118 * 1 2 3 28 28 H 1.08996 * 109.47251 * 330.00054 * 1 2 3 29 29 H 1.07999 * 122.53806 * 0.02562 * 3 2 1 30 30 H 1.08007 * 122.54135 * 179.72695 * 4 3 2 31 31 H 1.09002 * 109.46771 * 209.99842 * 6 5 4 32 32 H 1.08998 * 109.47110 * 329.99119 * 6 5 4 33 33 H 1.08997 * 109.46788 * 299.99636 * 7 6 5 34 34 H 1.08998 * 109.46827 * 59.99367 * 7 6 5 35 35 H 1.08997 * 109.47478 * 299.99727 * 8 7 6 36 36 H 1.09001 * 109.46735 * 60.00471 * 8 7 6 37 37 H 0.96996 * 120.00206 * 359.97438 * 11 9 8 38 38 H 1.08002 * 125.80799 * 359.97156 * 13 12 11 39 39 H 0.97005 * 119.99302 * 180.02562 * 19 18 16 40 40 H 1.08001 * 126.24062 * 359.97099 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 6 5.8647 -1.1569 1.4391 8 6 7.2970 -1.6948 1.4377 9 6 7.7686 -1.8714 2.8580 10 8 7.0314 -1.5947 3.7808 11 7 9.0095 -2.3368 3.1031 12 6 9.4494 -2.5021 4.4282 13 6 8.7076 -2.2176 5.5888 14 7 9.4467 -2.5015 6.6313 15 7 10.6882 -2.9671 6.1797 16 6 11.7400 -3.3612 6.9696 17 1 12.6213 -3.7933 6.5192 18 6 11.6703 -3.2041 8.3488 19 7 10.5568 -2.7883 8.9067 20 14 13.1608 -3.5843 9.4087 21 1 13.9214 -2.3340 9.6601 22 1 12.7142 -4.1607 10.7024 23 1 14.0316 -4.5607 8.7061 24 6 10.6672 -2.9584 4.8150 25 16 2.5209 -1.4371 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.8668 2.0895 0.0004 30 1 4.3720 1.6351 -0.0050 31 1 5.4132 -1.9376 -0.5173 32 1 6.0384 -0.2711 -0.5169 33 1 5.8375 -0.1963 1.9535 34 1 5.2122 -1.8628 1.9531 35 1 7.3239 -2.6555 0.9235 36 1 7.9496 -0.9891 0.9237 37 1 9.5989 -2.5585 2.3653 38 1 7.6988 -1.8328 5.6154 39 1 10.5084 -2.6784 9.8693 40 1 11.4728 -3.2603 4.1620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750846122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:07 Heat of formation + Delta-G solvation = 60.657439 kcal Electronic energy + Delta-G solvation = -22417.668925 eV Core-core repulsion = 18939.447464 eV Total energy + Delta-G solvation = -3478.221462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88662 -38.71022 -38.22715 -35.10094 -34.11357 -33.11469 -32.01222 -30.23751 -29.16592 -27.57430 -25.45870 -24.57648 -23.18415 -21.95884 -20.88710 -19.98516 -19.36359 -18.98812 -17.50521 -17.10335 -16.27644 -15.63731 -15.44214 -15.35734 -15.18985 -14.27046 -14.10994 -14.08295 -13.61305 -13.40013 -13.24830 -13.19504 -12.88240 -12.65010 -12.51948 -12.06289 -11.74278 -11.63720 -11.50835 -11.41885 -11.36441 -11.25072 -10.92338 -10.90737 -10.68063 -10.51491 -10.09798 -9.14706 -9.10166 -8.76952 -8.62186 -8.58146 -8.02609 -6.66030 -6.54020 -4.20420 0.81708 1.43341 1.83315 2.57243 2.87956 3.05790 3.07622 3.11481 3.65560 3.71248 3.91234 4.45760 4.53622 4.64463 4.75467 4.87647 4.98120 5.03218 5.06743 5.11097 5.20454 5.27497 5.35794 5.47721 5.53828 5.56100 5.63299 5.71050 5.95215 6.09937 6.15380 6.26809 6.30638 6.38446 6.50696 6.94620 6.99988 7.17308 7.28404 7.89034 8.23271 8.33505 8.67293 8.92863 9.41234 9.70329 10.42368 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.036054 B = 0.001889 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.429232 B =14818.287045 C =15241.051226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.187 4.187 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.167 4.167 6 C -0.050 4.050 7 C -0.098 4.098 8 C -0.135 4.135 9 C 0.496 3.504 10 O -0.537 6.537 11 N -0.628 5.628 12 C -0.060 4.060 13 C -0.034 4.034 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.325 4.325 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.084 4.084 25 S 0.095 5.905 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.396 0.604 38 H 0.176 0.824 39 H 0.274 0.726 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 4.059 -20.121 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.304 4.304 3 C -0.168 4.168 4 C -0.169 4.169 5 C -0.284 4.284 6 C -0.089 4.089 7 C -0.136 4.136 8 C -0.176 4.176 9 C 0.282 3.718 10 O -0.414 6.414 11 N -0.270 5.270 12 C -0.165 4.165 13 C -0.210 4.210 14 N -0.093 5.093 15 N 0.088 4.912 16 C -0.457 4.457 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.235 4.235 25 S 0.359 5.641 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.229 0.771 38 H 0.192 0.808 39 H 0.085 0.915 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.717 2.725 -17.952 22.168 hybrid contribution 1.329 1.253 -0.872 2.024 sum -11.387 3.978 -18.824 22.357 Atomic orbital electron populations 1.20317 0.88002 1.03149 1.02534 1.24459 0.99887 0.95831 1.10273 1.20054 0.92992 0.99116 1.04636 1.20075 0.96203 0.95992 1.04637 1.24459 0.98620 0.96386 1.08957 1.20219 0.89304 1.01321 0.98087 1.21334 0.94502 1.03045 0.94742 1.21606 0.98132 1.03136 0.94687 1.20436 0.81560 0.78625 0.91190 1.90601 1.54522 1.50438 1.45836 1.42581 1.14542 1.63587 1.06314 1.17312 0.96074 1.19426 0.83703 1.24112 1.01165 1.07031 0.88645 1.78241 0.90166 1.20981 1.19875 1.44540 1.09296 1.35343 1.02026 1.19863 0.94434 1.42665 0.88710 0.86655 1.25645 0.98195 0.95781 0.97478 1.70233 1.24291 1.33389 1.11764 0.85819 0.80114 0.79070 0.79177 1.19664 1.20118 1.18801 1.21267 0.98765 1.17025 0.86453 1.84279 0.96746 1.09558 1.73557 0.90925 0.91351 0.90620 0.84599 0.84384 0.90751 0.89877 0.90656 0.90864 0.89257 0.89202 0.77105 0.80760 0.91508 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.38 36.01 0.37 -0.17 16 2 C -0.19 -1.76 6.51 -36.00 -0.23 -1.99 16 3 C -0.14 -1.30 10.05 -41.21 -0.41 -1.71 16 4 C -0.14 -1.38 10.05 -41.21 -0.41 -1.79 16 5 C -0.17 -1.70 5.76 -36.00 -0.21 -1.91 16 6 C -0.05 -0.44 5.71 -27.89 -0.16 -0.60 16 7 C -0.10 -1.12 4.49 -26.73 -0.12 -1.24 16 8 C -0.14 -1.48 5.70 -27.88 -0.16 -1.64 16 9 C 0.50 8.46 7.80 -10.99 -0.09 8.37 16 10 O -0.54 -11.55 13.14 5.54 0.07 -11.47 16 11 N -0.63 -11.07 5.47 -10.00 -0.05 -11.13 16 12 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 13 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 14 N -0.26 -7.76 10.42 30.80 0.32 -7.43 16 15 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 16 C -0.32 -8.70 10.24 -14.81 -0.15 -8.86 16 17 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 18 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 19 N -0.77 -21.84 11.84 55.50 0.66 -21.18 16 20 Si 0.93 19.13 29.56 -169.99 -5.02 14.11 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 25 S 0.09 0.95 23.31 -107.50 -2.51 -1.56 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.40 5.26 8.83 -40.82 -0.36 4.90 16 38 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -34.66 358.46 -9.08 -43.74 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.29 Total: 9.28 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.62 Total: -15.70 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.88 Total: -43.81 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.66 -9.08 -43.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750846122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.397 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds