Wall clock time and date at job start Tue Mar 31 2020 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36718 * 119.65022 * 2 1 4 4 C 1.39355 * 119.66077 * 179.97438 * 3 2 1 5 5 C 1.41353 * 120.08836 * 0.02562 * 4 3 2 6 6 C 1.39501 * 119.28365 * 359.97438 * 5 4 3 7 7 C 1.38030 * 119.52595 * 359.73358 * 6 5 4 8 8 F 1.35094 * 119.62639 * 180.28946 * 7 6 5 9 9 N 1.35664 * 119.03263 * 179.97438 * 5 4 3 10 10 C 1.29842 * 121.58669 * 0.03964 * 9 5 4 11 11 N 1.35862 * 123.35567 * 359.95743 * 10 9 5 12 12 C 1.46501 * 119.68128 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46710 * 269.97324 * 12 11 10 14 14 O 1.21286 * 120.00083 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00034 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00248 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47422 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47243 * 89.99870 * 21 19 17 23 23 H 1.48496 * 109.47239 * 210.00274 * 21 19 17 24 24 H 1.48508 * 109.46994 * 330.00309 * 21 19 17 25 25 C 1.35339 * 120.63577 * 0.02562 * 11 10 9 26 26 O 1.21741 * 121.28550 * 179.97438 * 25 11 10 27 27 H 1.08999 * 109.47015 * 90.00150 * 1 2 3 28 28 H 1.09000 * 109.46646 * 209.99302 * 1 2 3 29 29 H 1.09000 * 109.47248 * 330.00020 * 1 2 3 30 30 H 1.07997 * 120.17672 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.24012 * 180.02562 * 6 5 4 32 32 H 1.07998 * 118.32187 * 179.97438 * 10 9 5 33 33 H 1.08996 * 109.47147 * 29.97354 * 12 11 10 34 34 H 1.09002 * 109.47452 * 149.97711 * 12 11 10 35 35 H 0.96994 * 120.00047 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.47440 * 300.00638 * 16 15 13 37 37 H 1.09006 * 109.47299 * 59.99759 * 16 15 13 38 38 H 0.97002 * 119.99931 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1834 1.1882 0.0000 4 6 3.5770 1.1884 0.0005 5 6 4.2858 -0.0345 0.0005 6 6 3.5753 -1.2350 0.0005 7 6 2.1953 -1.2088 0.0061 8 9 1.5053 -2.3701 0.0121 9 7 5.6422 -0.0093 0.0005 10 6 6.3016 1.1093 0.0013 11 7 5.7034 2.3291 0.0013 12 6 6.5268 3.5409 0.0017 13 6 6.8082 3.9565 1.4226 14 8 6.3650 3.3044 2.3443 15 7 7.5531 5.0522 1.6693 16 6 7.8272 5.4559 3.0506 17 6 8.6751 6.7018 3.0511 18 1 8.9790 7.1484 2.1160 19 6 9.0618 7.2720 4.2453 20 7 8.6912 6.7284 5.3841 21 14 10.1122 8.8167 4.2459 22 1 9.2329 10.0133 4.2451 23 1 10.9686 8.8325 5.4590 24 1 10.9703 8.8322 3.0340 25 6 4.3542 2.4356 0.0010 26 8 3.8058 3.5225 0.0015 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6406 2.1218 0.0004 31 1 4.1013 -2.1783 0.0010 32 1 7.3808 1.0678 0.0017 33 1 7.4674 3.3411 -0.5116 34 1 5.9952 4.3416 -0.5126 35 1 7.9078 5.5735 0.9323 36 1 6.8867 5.6558 3.5642 37 1 8.3586 4.6550 3.5647 38 1 8.9637 7.1293 6.2243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783919895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:25 Heat of formation + Delta-G solvation = -93.377862 kcal Electronic energy + Delta-G solvation = -25484.247023 eV Core-core repulsion = 21433.132914 eV Total energy + Delta-G solvation = -4051.114110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.15878 -42.85719 -40.65085 -39.53922 -38.69525 -36.26266 -35.68010 -34.40830 -32.96580 -32.25419 -30.42620 -28.47690 -28.36553 -25.50850 -24.89703 -24.22453 -23.34253 -21.70030 -20.34304 -19.62770 -19.32928 -18.60402 -17.90830 -17.47538 -17.33718 -17.00157 -16.88117 -16.54646 -16.38888 -16.33026 -15.64993 -15.29066 -15.10283 -14.69503 -14.49112 -14.43487 -14.32735 -14.21074 -14.13222 -14.02579 -13.19595 -13.09185 -12.94932 -12.88405 -12.72005 -12.63507 -12.23150 -11.58639 -11.49911 -11.44226 -11.17571 -10.82078 -10.74522 -10.11693 -9.91280 -9.21756 -8.30005 -6.46634 -0.73310 -0.47358 0.96864 1.14549 1.44249 1.46030 1.47891 1.57284 1.59628 2.29327 2.47989 2.69554 2.75326 2.96649 3.05682 3.23966 3.46195 3.61313 3.65813 3.87260 3.93929 4.02590 4.15746 4.21978 4.47319 4.58732 4.70872 4.72560 4.80718 5.04480 5.07790 5.08635 5.18709 5.21171 5.35183 5.43860 5.57605 5.63847 5.82602 6.42561 6.64182 6.68833 6.79264 7.21871 7.39614 8.82119 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.002444 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.155409 B =11452.722258 C =11663.615357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.138 4.138 3 C -0.020 4.020 4 C -0.226 4.226 5 C 0.169 3.831 6 C -0.149 4.149 7 C 0.146 3.854 8 F -0.125 7.125 9 N -0.540 5.540 10 C 0.400 3.600 11 N -0.530 5.530 12 C 0.086 3.914 13 C 0.481 3.519 14 O -0.599 6.599 15 N -0.696 5.696 16 C 0.267 3.733 17 C -0.554 4.554 18 H 0.089 0.911 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.984 3.016 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.251 1.251 25 C 0.544 3.456 26 O -0.541 6.541 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.250 0.750 33 H 0.192 0.808 34 H 0.139 0.861 35 H 0.415 0.585 36 H -0.020 1.020 37 H -0.007 1.007 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -13.714 -18.159 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.040 4.040 4 C -0.231 4.231 5 C 0.060 3.940 6 C -0.169 4.169 7 C 0.126 3.874 8 F -0.103 7.103 9 N -0.260 5.260 10 C 0.114 3.886 11 N -0.250 5.250 12 C -0.040 4.040 13 C 0.266 3.734 14 O -0.481 6.481 15 N -0.347 5.347 16 C 0.144 3.856 17 C -0.591 4.591 18 H 0.107 0.893 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.807 3.193 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.174 1.174 25 C 0.338 3.662 26 O -0.417 6.417 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.265 0.735 33 H 0.209 0.791 34 H 0.157 0.843 35 H 0.251 0.749 36 H -0.002 1.002 37 H 0.011 0.989 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.759 -14.333 -17.326 24.132 hybrid contribution 0.010 1.502 0.679 1.648 sum -8.749 -12.831 -16.647 22.767 Atomic orbital electron populations 1.20831 0.87301 1.04447 1.04245 1.19894 0.99091 0.90531 1.04419 1.20606 0.91328 0.98932 0.93087 1.20716 0.96286 0.92354 1.13791 1.18627 0.89699 0.91712 0.94008 1.20835 0.91702 0.98789 1.05529 1.17577 0.89295 0.81428 0.99136 1.91523 1.79273 1.46277 1.93236 1.68690 1.06788 1.25318 1.25251 1.25752 1.01677 0.77533 0.83617 1.46306 1.07352 1.09452 1.61848 1.22090 1.00202 0.88242 0.93424 1.21589 0.78224 0.81041 0.92506 1.90713 1.53486 1.55622 1.48276 1.46063 1.51279 1.26969 1.10362 1.18543 0.93878 0.94460 0.78690 1.21631 1.32982 1.10331 0.94189 0.89289 1.26077 0.97473 1.01477 0.94710 1.70143 1.46444 1.42093 0.98484 0.85164 0.78088 0.77693 0.78327 1.19977 1.21178 1.17425 1.18604 0.82112 0.89660 0.75775 1.90846 1.70862 1.29803 1.50218 0.89039 0.90305 0.89802 0.83336 0.81488 0.73468 0.79127 0.84344 0.74865 1.00228 0.98877 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.81 71.24 0.70 -0.85 16 2 C -0.14 -2.78 5.86 -20.01 -0.12 -2.90 16 3 C -0.02 -0.49 9.24 22.18 0.21 -0.28 16 4 C -0.23 -6.35 5.89 -19.96 -0.12 -6.47 16 5 C 0.17 4.35 6.63 39.62 0.26 4.62 16 6 C -0.15 -3.23 10.01 22.53 0.23 -3.01 16 7 C 0.15 3.01 7.23 22.43 0.16 3.18 16 8 F -0.12 -2.40 16.41 44.97 0.74 -1.66 16 9 N -0.54 -12.83 10.38 -191.93 -1.99 -14.82 16 10 C 0.40 8.02 11.40 180.19 2.06 10.08 16 11 N -0.53 -13.15 2.09 -652.02 -1.37 -14.51 16 12 C 0.09 1.79 5.84 85.63 0.50 2.29 16 13 C 0.48 17.10 7.90 87.66 0.69 17.79 16 14 O -0.60 -28.34 16.43 -3.05 -0.05 -28.39 16 15 N -0.70 -26.37 5.55 -466.78 -2.59 -28.96 16 16 C 0.27 14.05 5.43 85.63 0.46 14.52 16 17 C -0.55 -28.83 9.28 25.60 0.24 -28.60 16 18 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 21 Si 0.98 41.21 29.54 68.60 2.03 43.23 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 25 C 0.54 17.02 7.66 86.44 0.66 17.68 16 26 O -0.54 -19.93 16.32 -4.48 -0.07 -20.01 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.01 7.59 -2.39 -0.02 0.99 16 29 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 30 H 0.15 3.45 7.82 -2.91 -0.02 3.42 16 31 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.25 2.35 7.99 -2.91 -0.02 2.33 16 33 H 0.19 1.46 7.99 -2.39 -0.02 1.45 16 34 H 0.14 2.71 7.46 -2.39 -0.02 2.69 16 35 H 0.41 12.00 8.32 -92.71 -0.77 11.23 16 36 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 37 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -82.55 342.59 3.73 -78.83 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.35 Total: 13.02 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 6.39 Total: 28.62 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -5.66 Total: -113.64 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.12 Total: -48.40 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.74 Total: -1.66 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -82.55 3.73 -78.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783919895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.551 kcal (2) G-P(sol) polarization free energy of solvation -82.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds