Wall clock time and date at job start Tue Mar 31 2020 12:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37804 * 121.55987 * 2 1 4 4 C 1.35140 * 114.76247 * 180.20788 * 3 2 1 5 5 C 1.50696 * 127.25010 * 179.87068 * 4 3 2 6 6 N 1.46498 * 109.47256 * 89.70784 * 5 4 3 7 7 C 1.39251 * 120.00102 * 179.97438 * 6 5 4 8 8 N 1.32299 * 119.73390 * 0.02562 * 7 6 5 9 9 C 1.32012 * 121.67947 * 180.02562 * 8 7 6 10 10 C 1.38014 * 120.95450 * 359.97438 * 9 8 7 11 11 C 1.38848 * 119.36742 * 0.26070 * 10 9 8 12 12 C 1.38710 * 118.45713 * 359.52166 * 11 10 9 13 13 O 1.36010 * 120.49404 * 180.24502 * 12 11 10 14 14 C 1.42899 * 117.00476 * 0.21370 * 13 12 11 15 15 C 1.52994 * 109.47615 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47383 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00075 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00319 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00233 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47411 * 90.00291 * 20 18 16 22 22 H 1.48506 * 109.47201 * 210.00393 * 20 18 16 23 23 H 1.48506 * 109.46982 * 329.99978 * 20 18 16 24 24 S 1.72049 * 105.49967 * 359.60862 * 4 3 2 25 25 N 1.30077 * 121.55876 * 179.75644 * 2 1 3 26 26 H 1.09002 * 109.47103 * 270.21976 * 1 2 3 27 27 H 1.09001 * 109.47253 * 30.21865 * 1 2 3 28 28 H 1.09000 * 109.47349 * 150.22211 * 1 2 3 29 29 H 1.07999 * 122.62019 * 0.04239 * 3 2 1 30 30 H 1.08998 * 109.47484 * 329.70551 * 5 4 3 31 31 H 1.09002 * 109.46985 * 209.71096 * 5 4 3 32 32 H 0.97000 * 119.99886 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.52511 * 180.02562 * 9 8 7 34 34 H 1.08002 * 120.31329 * 179.97438 * 10 9 8 35 35 H 1.07997 * 120.77343 * 179.74747 * 11 10 9 36 36 H 1.09004 * 109.47020 * 300.00255 * 14 13 12 37 37 H 1.08998 * 109.47186 * 59.99385 * 14 13 12 38 38 H 1.09004 * 109.46789 * 299.99973 * 15 14 13 39 39 H 1.09000 * 109.47290 * 59.99922 * 15 14 13 40 40 H 0.97003 * 119.99658 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1742 0.0000 4 6 3.5701 1.0143 -0.0045 5 6 4.6178 2.0974 -0.0083 6 7 4.9570 2.4538 1.3716 7 6 5.9091 3.4385 1.6225 8 7 6.5039 4.0491 0.6107 9 6 7.4121 4.9874 0.8044 10 6 7.7773 5.3695 2.0793 11 6 7.1828 4.7523 3.1717 12 6 6.2283 3.7730 2.9391 13 8 5.6161 3.1451 3.9787 14 6 5.9999 3.5458 5.2956 15 6 5.2112 2.7349 6.3257 16 6 5.6155 3.1580 7.7144 17 1 6.3608 3.9280 7.8489 18 6 5.0348 2.5613 8.8134 19 7 5.3880 2.9302 10.0253 20 14 3.7462 1.2290 8.5809 21 1 4.4108 -0.0977 8.5225 22 1 2.7947 1.2562 9.7208 23 1 3.0086 1.4694 7.3146 24 16 3.8305 -0.6864 0.0028 25 7 2.1878 -1.1084 0.0047 26 1 -0.3633 0.0039 1.0277 27 1 -0.3634 0.8880 -0.5172 28 1 -0.3634 -0.8920 -0.5104 29 1 1.7579 2.1464 0.0007 30 1 4.2310 2.9753 -0.5257 31 1 5.5103 1.7378 -0.5206 32 1 4.5188 2.0033 2.1105 33 1 7.8754 5.4635 -0.0472 34 1 8.5218 6.1381 2.2257 35 1 7.4545 5.0307 4.1792 36 1 7.0665 3.3681 5.4331 37 1 5.7884 4.6068 5.4286 38 1 4.1446 2.9123 6.1883 39 1 5.4232 1.6740 6.1925 40 1 4.9796 2.5101 10.7985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787796067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:09 Heat of formation + Delta-G solvation = 15.833758 kcal Electronic energy + Delta-G solvation = -23073.544906 eV Core-core repulsion = 19593.379744 eV Total energy + Delta-G solvation = -3480.165162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58092 -40.22334 -39.14174 -37.08765 -35.44710 -33.46525 -33.02440 -32.08226 -30.54921 -30.15691 -27.47343 -27.13414 -24.24561 -23.65226 -22.87316 -22.14435 -20.57385 -19.62275 -19.22137 -18.69323 -18.05687 -17.81791 -17.09059 -16.41140 -16.28270 -15.83377 -15.66011 -15.49278 -15.35565 -14.97736 -14.75948 -14.55485 -14.22518 -14.05812 -13.80456 -13.57852 -13.29026 -13.25564 -13.07484 -12.76680 -12.70456 -12.21356 -12.18800 -11.86148 -11.67990 -11.51801 -11.49082 -11.20310 -10.83548 -10.82053 -10.46189 -10.17166 -9.65877 -8.36662 -8.35933 -6.43021 -0.45686 0.36839 0.41021 0.43885 0.81379 1.33644 1.34651 1.35022 1.46734 2.23527 2.30582 2.31132 2.95146 2.98735 3.27524 3.67540 3.90073 3.96767 4.05280 4.15279 4.22449 4.22686 4.29809 4.35973 4.43993 4.54298 4.64013 4.66526 4.72307 4.80273 4.86973 5.04965 5.08012 5.22043 5.29217 5.30690 5.48974 5.58914 5.65213 5.99163 6.14896 6.22718 6.55606 6.63103 7.19018 7.22263 8.79095 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.003903 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.424196 B = 7171.524107 C = 9993.497436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.112 3.888 3 C -0.179 4.179 4 C -0.187 4.187 5 C 0.223 3.777 6 N -0.722 5.722 7 C 0.374 3.626 8 N -0.522 5.522 9 C 0.101 3.899 10 C -0.187 4.187 11 C -0.139 4.139 12 C 0.001 3.999 13 O -0.331 6.331 14 C 0.090 3.910 15 C -0.004 4.004 16 C -0.536 4.536 17 H 0.043 0.957 18 C 0.016 3.984 19 N -0.942 5.942 20 Si 0.945 3.055 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.250 1.250 24 S 0.245 5.755 25 N -0.492 5.492 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.182 0.818 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.192 0.808 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 0.002 -25.912 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.215 4.215 4 C -0.317 4.317 5 C 0.098 3.902 6 N -0.359 5.359 7 C 0.137 3.863 8 N -0.241 5.241 9 C -0.054 4.054 10 C -0.209 4.209 11 C -0.166 4.166 12 C -0.050 4.050 13 O -0.245 6.245 14 C 0.016 3.984 15 C -0.042 4.042 16 C -0.574 4.574 17 H 0.062 0.938 18 C -0.182 4.182 19 N -0.582 5.582 20 Si 0.768 3.232 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.174 1.174 24 S 0.400 5.600 25 N -0.314 5.314 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.199 0.801 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.209 0.791 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.749 -2.502 -26.754 27.131 hybrid contribution -0.882 1.249 1.997 2.515 sum -4.631 -1.253 -24.757 25.218 Atomic orbital electron populations 1.20724 0.84157 1.05204 1.04543 1.22072 1.00744 0.87886 0.95846 1.21504 0.92079 1.01745 1.06137 1.25530 0.98984 1.01101 1.06072 1.19393 0.93869 0.93471 0.83513 1.44401 1.43227 1.40569 1.07722 1.17799 0.91431 0.91099 0.85924 1.67278 1.12862 1.12455 1.31536 1.22852 0.92520 0.92293 0.97712 1.22004 1.03484 1.03320 0.92064 1.21771 0.96606 0.96375 1.01813 1.19683 0.98972 0.98567 0.87772 1.85961 1.62897 1.61263 1.14337 1.22620 0.98942 0.98858 0.78011 1.19412 0.96537 0.96216 0.91999 1.21120 1.23938 1.22124 0.90189 0.93838 1.25830 0.98752 0.99118 0.94531 1.70020 1.44849 1.44392 0.98892 0.85739 0.79297 0.79379 0.78778 1.19196 1.20489 1.17375 1.84198 1.10684 0.97521 1.67551 1.76707 1.00819 1.27798 1.26124 0.89145 0.87448 0.90208 0.80121 0.88734 0.90213 0.75269 0.79150 0.82066 0.84344 0.92561 0.92427 0.95470 0.95745 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.26 71.24 0.73 -0.27 16 2 C 0.11 2.12 6.71 42.72 0.29 2.41 16 3 C -0.18 -3.10 9.91 21.45 0.21 -2.89 16 4 C -0.19 -3.63 5.96 24.97 0.15 -3.48 16 5 C 0.22 4.36 6.27 85.63 0.54 4.90 16 6 N -0.72 -18.17 5.70 -348.31 -1.98 -20.16 16 7 C 0.37 10.58 7.50 133.11 1.00 11.58 16 8 N -0.52 -13.02 9.57 -192.79 -1.84 -14.87 16 9 C 0.10 2.04 11.17 84.61 0.95 2.98 16 10 C -0.19 -3.92 10.10 22.36 0.23 -3.69 16 11 C -0.14 -3.84 9.14 22.53 0.21 -3.64 16 12 C 0.00 0.04 6.72 22.70 0.15 0.19 16 13 O -0.33 -12.04 9.38 -93.67 -0.88 -12.92 16 14 C 0.09 3.58 4.70 71.98 0.34 3.91 16 15 C 0.00 -0.19 4.41 29.84 0.13 -0.06 16 16 C -0.54 -30.18 9.66 25.60 0.25 -29.93 16 17 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 18 C 0.02 0.92 5.47 84.66 0.46 1.38 16 19 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 20 Si 0.94 43.80 27.47 68.60 1.88 45.69 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 24 S 0.24 5.40 23.72 -56.49 -1.34 4.07 16 25 N -0.49 -11.82 12.05 -52.60 -0.63 -12.45 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 0.72 8.12 -2.39 -0.02 0.70 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.41 11.12 7.81 -92.71 -0.72 10.40 16 33 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.14 3.79 6.44 -2.91 -0.02 3.77 16 36 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 37 H 0.06 2.22 7.71 -2.39 -0.02 2.20 16 38 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 39 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.81 356.16 1.42 -67.39 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.29 Total: 17.27 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 5.62 Total: -16.61 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -4.16 Total: -104.88 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.88 Total: -12.92 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.34 Total: 4.07 kcal Total: -68.81 1.42 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787796067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.227 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds